Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13068
- Subject:
- NM_001135196.2
- Aligned Length:
- 4305
- Identities:
- 2119
- Gaps:
- 2172
Alignment
Query 1 ATGATGCAAGGAAATAAGAAGTGCACAGACGCGTTCAGCGACTCCTCCAGCATCGGCAGCGTGTTGGATGATGC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGCAAGGAAATAAGAAGTGCACAGACGCGTTCAGCGACTCCTCCAGCATCGGCAGCGTGTTGGATGATGC 74
Query 75 AGACAGGGAGGTGAGCAGCCTAACAGACCGGGCATTCCGGAGTTTGTGCATCTCCGAGGACACATCCTTCCATG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGACAGGGAGGTGAGCAGCCTAACAGACCGGGCATTCCGGAGTTTGTGCATCTCCGAGGACACATCCTTCCATG 148
Query 149 ACTCCTATCTGGCTGTGTCCCCGGATATCACCCGACAGGTGTTTGGGACTTTTCACCAGAGAACAGTGGGCCAC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACTCCTATCTGGCTGTGTCCCCGGATATCACCCGACAGGTGTTTGGGACTTTTCACCAGAGAACAGTGGGCCAC 222
Query 223 ACCCAGAGGAAAAGTGGCATTTGGAGCCAGTTACCGTCACAGGGCACGGAACATTCGGGCTGGGCGGCCACCTT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACCCAGAGGAAAAGTGGCATTTGGAGCCAGTTACCGTCACAGGGCACGGAACATTCGGGCTGGGCGGCCACCTT 296
Query 297 CCAACAGCTACCCAAGTACGTTCAGGGAGAGGAAAAGTACCCCAAAACCAGCCCCCCACCAACGCCAGTCCAGA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCAACAGCTACCCAAGTACGTTCAGGGAGAGGAAAAGTACCCCAAAACCAGCCCCCCACCAACGCCAGTCCAGA 370
Query 371 GGAGACTGGAGGTGCCAGTTTCCGGCCTAAGGAGCAGCAATAAGCCTGTCTCCAAAGTATCAACACTAATTAAA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAGACTGGAGGTGCCAGTTTCCGGCCTAAGGAGCAGCAATAAGCCTGTCTCCAAAGTATCAACACTAATTAAA 444
Query 445 TCTTTCGACAGGACCGAGAGCCAACGTTGTGAGAGCAGGCCCACTGCCAGCAAGCCTCCGGCTCTGAAAAATCC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCTTTCGACAGGACCGAGAGCCAACGTTGTGAGAGCAGGCCCACTGCCAGCAAGCCTCCGGCTCTGAAAAATCC 518
Query 519 TCCCAAATTCGCTCCTCTTCCAGAAAACAGTGTCAACTTCTGCTTCGATTCTGCCTTTCTGACAGTCAGGAGGG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCCCAAATTCGCTCCTCTTCCAGAAAACAGTGTCAACTTCTGCTTCGATTCTGCCTTTCTGACAGTCAGGAGGG 592
Query 593 TGCCCGCTGAAGTTTCCAACACCCATCAGAACAGCTACCAGCCAGGCAGGAAGCACGGAGAACAGGAGTCCTCC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGCCCGCTGAAGTTTCCAACACCCATCAGAACAGCTACCAGCCAGGCAGGAAGCACGGAGAACAGGAGTCCTCC 666
Query 667 AAGAATCCAGAAATGGCCTGTCACGGCTCCAGCAGCTTCCTCCCAGCAGCCAATGACACGGCCACCTTATGTGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGAATCCAGAAATGGCCTGTCACGGCTCCAGCAGCTTCCTCCCAGCAGCCAATGACACGGCCACCTTATGTGA 740
Query 741 GTCAAAGTTCCCCTCTCCACACCACAAGCCAGTCACGGGTGAGCCTGGGAGAGGCAAAGGTACCTTTCTGCACA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTCAAAGTTCCCCTCTCCACACCACAAGCCAGTCACGGGTGAGCCTGGGAGAGGCAAAGGTACCTTTCTGCACA 814
Query 815 GTGAAAATAGTGCTTTTGAGTCATGGAATGCCCACCAACCAAAGCTGCTGGAGAGAAAGGACACAGCTGGAACC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTGAAAATAGTGCTTTTGAGTCATGGAATGCCCACCAACCAAAGCTGCTGGAGAGAAAGGACACAGCTGGAACC 888
Query 889 GTCCCAGAAAGCAAAGCTCCCAAGCACTATGGGGACACGACCTTGCTAAGAGAACCCTGTCCTCCTGAGCTCAC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 889 GTCCCAGAAAGCAAAGCTCCCAAGCACTATGGGGACACGACCTTGCTAAGAGAACCCTGTCCTCCTGAGCGCAC 962
Query 963 AGTCTCTCCCTGCCAGGTCCAGGCCAGCTGCAGTCAGGAAGAGAACAGACTCGAAGCAGGGGCTCTGTCCACAT 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||.|.||||||||||||||||||||
Sbjct 963 AGTCTCTCCCTGCCAGGTCCAGGCCAGCTGCAGTCAGGAAGAGAACAGACTTGCAGCAGGGGCTCTGTCCACAT 1036
Query 1037 CTATACCCTGGGGGTGCAGGGATCCAGGAGCCCAGGTATTTGCTGTGGAAGGAAAAGCTCCCAGCTCACAACCT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTATACCCTGGGGGTGCAGGGATCCAGGAGCCCAGGTATTTGCTGTGGAAGGAAAAGCTCCCAGCTCACAACCT 1110
Query 1111 GATTCTCAAGAGAAGCCAGCCCAGCCCCCATGGAGGAAGCCAAAGACTGGCAAAAAAGGGAAAGAAAGTCTACA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GATTCTCAAGAGAAGCCAGCCCAGCCCCCATGGAGGAAGCCAAAGACTGGCAAAAAAGGGAAAGAAAGTCTACA 1184
Query 1185 AGATACTTTAGAAGAAAAGACACAGACCAACCAGAGAGGCCCACCTTTGTATACAAAACACAACCCCCAGGAAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGATACTTTAGAAGAAAAGACACAGACCAACCAGAGAGGCCCACCTTTGTATACAAAACACAACCCCCAGGAAC 1258
Query 1259 AGTTTTCAGAAAACAATGCTCTTGACCTGCCTGTGGAACCCAATGAACATTATGATCCCCCCTTTAACATCAGT 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGTTTTCAGAAAACAATGCTCTTGACCTGCCTGTGGAACCCAATGAACATTATGATCCCCCCTTTAACATCAGT 1332
Query 1333 AAGCTCCTGACCCCCATCATACCCAGCAAGCACGCCCTGGATTCAGCAGCCAGCCAGCCAGCAGAGCGAACCCC 1406
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1333 AAGCTCCTGACCCCCATCATACCCAGCAAGCACGCCCTGGATTCAGCAGACAGCCAGCCAGCAGAGCGAACCCC 1406
Query 1407 ATCACCCCCAGGACAGCTAAACGGATACCAAGAGAAGGAGCCCAGTGAATGTCAGTCTCGAGACAGCTACAAGT 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATCACCCCCAGGACAGCTAAACGGATACCAAGAGAAGGAGCCCAGTGAATGTCAGTCTCGAGACAGCTACAAGT 1480
Query 1481 CCAAAGCCCCTAGCCTGCTGTTCAACCTCAAGGACGTGCGGAAGCGTGTTAAGAGCACATACAGTTCCTCACCT 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCAAAGCCCCTAGCCTGCTGTTCAACCTCAAGGACGTGCGGAAGCGTGTTAAGAGCACATACAGTTCCTCACCT 1554
Query 1555 CTCTTGAAAGTGCTTGATGAGAAAACTAGAGGTAAGGTTGATGGAAAGCAAGAACCTGTGAGCAACGGTGTCAT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTCTTGAAAGTGCTTGATGAGAAAACTAGAGGTAAGGTTGATGGAAAGCAAGAACCTGTGAGCAACGGTGTCAT 1628
Query 1629 CCTCCCCAATGGGCTTGAGGAAAGCCCTCCAAATGAGCTTTCTAAGGAGAGACCCGCTGATGACCCCACTGCAT 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCTCCCCAATGGGCTTGAGGAAAGCCCTCCAAATGAGCTTTCTAAGGAGAGACCCGCTGATGACCCCACTGCAT 1702
Query 1703 CACACATCAATCCCCAGAAGGACCCTACAGCTGACCCCAGTGAGCCCTCTGCAGACAGCTATCTAACTCTTAGC 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CACACATCAATCCCCAGAAGGACCCTACAGCTGACCCCAGTGAGCCCTCTGCAGACAGCTATCTAACTCTTAGC 1776
Query 1777 ACAGCTCCGACTATCGCCAAAGCCCCCTTCTATGTCAATGGGGAGGCTGCTGAGAGAAGCAGTTATGAGAACAA 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ACAGCTCCGACTATCGCCAAAGCCCCCTTCTATGTCAATGGGGAGGCTGCTGAGAGAAGCAGTTATGAGAACAA 1850
Query 1851 GGAGGTGGAAGGAGAGTTGGAGATGGGTCCTGCCGGATCCAGCTGGTGTCCAGACTCCAGGGAACACCGCCCCA 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGAGGTGGAAGGAGAGTTGGAGATGGGTCCTGCCGGATCCAGCTGGTGTCCAGACTCCAGGGAACACCGCCCCA 1924
Query 1925 GGAAACACCTCTCCCTGAGGCTTTGCAATAGGGATCCTGAGCCTGGAGGGGCTACAGAGAAAATGAAGACCCAC 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 GGAAACACCTCTCCCTGAGGCTTTGCAATAGGGATCCTGAGCCTGGAGGGGCTACAGAGAAAATGAAGACCCAC 1998
Query 1999 CAGCTAGAGAATGGGCTCTCCAGATCTGTGTCCCAAGAGACAGAACCTGAGAGGGAAGCAGGACTTCAGAACAC 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CAGCTAGAGAATGGGCTCTCCAGATCTGTGTCCCAAGAGACAGAACCTGAGAGGGAAGCAGGACTTCAGAACAC 2072
Query 2073 ACA-------CACACA---------------------------------------------------------- 2081
||| ||.|.|
Sbjct 2073 ACATTTGAACCAGAAATTCTTCCCAGGGCCCCTCTCTCCTGAGGAGGAAGATGTGTTTTACAGTGACAGCCAAT 2146
Query 2082 -CGAT-------CA----------------------TCAACAC---------------ATACTTAGCCT--TTT 2108
|||| || |||.||| ||.|||.|||| |||
Sbjct 2147 CCGATTTTATGCCAAGCCTCAAAGGTAAGGCCAAATTCAGCACCAGCTCTTCAGATCAATCCTTTGCCTCATTT 2220
Query 2109 TA-GATC--CATAAAGT---------------CCA----GAAGGCAG--------------------------- 2133
.| |||| ||.||..| ||| ||||.|||
Sbjct 2221 GATGATCAGCAGAAGATGTGGTTTACTGAGAACCAGCGGGAAGACAGGAGGAAGGATGTGAGTGCAGGTGACAG 2294
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2295 TCAGAAGGATGAGAAGGAGAATGTGATGCGGAAGGATGAGCTGCAGTACTGTGCCTTAAGCAATGGGCACGCAT 2368
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2369 GCCTGGAAAACCGCAGCCAGGGGGAAGCATTGCAAAGAGAAAGGGAAAGTGTGTCTGGAGGAAGAACCAGGAAG 2442
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2443 GCATCAGCAGAGGAAGCTAATTTCAGAGGCTCTTGGATTGGGGAAAATAAGGGCACAACCTTTTCACAGGCCAA 2516
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2517 AGACCTTACTCCCTCACCATCTTCTGCTTCAAACAGGCACATGCTGTTTACGATTAAAGACAACACCCTCAGAG 2590
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2591 CTACCCCCGTAATTAAACCTATCATGCTGCCTCTCCTGAGGACCATGTCCTTGGAGGACTCCCTCAGCAGTGGC 2664
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2665 CACAAAGAGGAGGAATTGCCAAGGCCAGAATGGGGTGAGGATCCTGGGTTTTGTGCCCCCGAAAACCAGGACAT 2738
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2739 TCTTGGTACATCGACACCCACTAACACACGGGGCACACGTGTGAAGTGCATGGCCAACGAGGTCATGGAGGACC 2812
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2813 CTGGGCAGGGGTCGAGCATGGCCAGGATGGAGGCCTCTCAGCCAGCCCCAAAGGGGAATTTCCCATCTATGCCT 2886
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2887 CTGGTGGGAGAGGGGGACCGGGTGAAGGCACCACCAGATGCTGCACCTGGCCTCGTGGCAAGCAATTGCAAGAG 2960
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 2961 CGGTTCTGCAGACTCAGGGAAGCTGGCAGCCCCATGGCACATCCCCACCATTGCTTTACCCGAGGGTGACATAG 3034
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3035 AAGACCAGCCACCCCCATGGCAGCCCGAAAACTGTTGGGAAGAGCAAACACCAGGTTTCAAGAGTCACTTTTTG 3108
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3109 TCCACACCCAGAGCAGGGCCCCCTGGCAGAAGACTGGTCCCCAGTGAGAGGGCGAATTCCCCCAACCCCGGCTC 3182
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3183 CCCCGGGGAGAGCAGTGCCTGCTCCCCTGCTGCCAGCAACATTTGGGAGGAGTCTTCCCAGGCCCCTGGAGGAC 3256
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3257 CAGAGCTGCTTCCCGAGGAGCCTAATCAAGCCAGCCCCTGGGCCAGCTCCAGTCCTGCCAGGGTCACCCGGAGG 3330
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3331 GAGGACCTGACCCACGCCCTCGTGTGGGAGGGCGGCTCTGACCCCCTACTTGAGCTGTCGGCAGAAGACCTCCG 3404
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3405 GACCCTCTCTCCAAGAGGTTCATTGCTGGATGTGGCCACCAGCCCAGCAGGCACCTCTGGGAGACTTGAGCTTC 3478
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3479 CTGCACAGCTAGAGAGGACAGCAAGCAAGCCACCTGCAGTCCCACCCAAAACAGAGAAAGCCCTGCGGCGGGCA 3552
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3553 AAGAAGCTGGCAAGTAAGAGGAGGAAGACGGATCAGGCTCAGGAGAAGCATGGCGAGTCACAGGAGGGAAAGCC 3626
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3627 CTGCCCGGAGGACTTGGAGCAGACACAGCAAAGGCCGCTGTGCCCCAGAGAGAGGCCCCGACACAATTTCCCCG 3700
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3701 TGGTCCGTTCCCTGCCCCCTCCCGTGCACCGCCACTCCGTGTCCGGCTTCTCGGAGCCTGTCGGGAGGCGGCCC 3774
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3775 GGGGGCCCCCAGTCCCTCACACCCCTGCCCGCGTACCCCGCCACCCAGAAGGTCCTCCAGGATCCGCAGTCCGG 3848
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3849 GGAGTACTTTGTCTTCGACTTGCCACTCCAGGTGAAAATCAAGACCTTCTATGACCCAGAGACGGGCAAGTATG 3922
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3923 TCAAGGTCTCCATCCCGTCCTCCGAGGGGGCCTCCCCAGAGCCGCCCCCACCGGACGCCCTGGCCGCTCCCTAT 3996
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3997 GTGCTGTACCCCGGCTTCCAGCCAGTGCCCGTGACGGCCTTGATGCCGCTGCGCTGCTCCTCTCAGCTCTCCGC 4070
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 4071 GCCCACCTTCCTCAGGCAGGGCCCTCGTGCCTCCGCGGCCCGCGCCAGGACCCAGAGTGTCCACGAGTCTGGAC 4144
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 4145 TACAGCTGGACCCAGGGCCTCACGGTGACTGCACCCCGCACTCTGCAGGCCAGCGCCCTCATGGTCCTCCCCAG 4218
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 4219 AGCCCAGGAGAGGAGGGTGTAGAAGCTCCAGGCCTGGGCATCATCTCCACTGATGACCTAGAGGACTTTGCCAC 4292
Query 2134 ------------- 2133
Sbjct 4293 AGAAGGCATTTCT 4305
