Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13098
Subject:
NR_135753.2
Aligned Length:
5771
Identities:
255
Gaps:
5506

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT  74

Query    1  -----------------------------------------------ATGGCGTCCGAACTTTGTAAGACGATC  27
                                                           |||||||||||||||||||||||||||
Sbjct   75  TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC  148

Query   28  TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT  222

Query  102  ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA  296

Query  176  ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTGAAGACAACTG------------TTAGTTTTG--------  229
            ||||||||||||||||||||||||||||||||||    |.|.|||            .|||||.||        
Sbjct  297  ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACT----ATACCTGCACTCAAATAACATAGTTGTGGTTCCGGA  366

Query  230  ------TGG----CTT-----ACTGCTGCTCCACCCAGTGTCTGCA-------GAC---------------TTT  266
                  |||    |||     |||          |||.||||||.|       |||               .||
Sbjct  367  AGCCATTGGGTCTCTTGTAAAACT----------CCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTT  430

Query  267  TGACCTG-----------CTGAGT--------------------------------------------------  279
            ||.||.|           |||||.                                                  
Sbjct  431  TGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCC  504

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  505  AGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAG  578

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  579  CTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATA  652

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  653  CGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTG  726

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  727  GTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCT  800

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  801  GAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCA  874

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  875  TACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGC  948

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  949  TGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCC  1022

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1023  TTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCAC  1096

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1097  CCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGCTTGACAC  1170

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1171  TGGGGAATCCAGCCAGTCCAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAACTCTCTAG  1244

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1245  AAATGTCATGATTGAGCTTCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCCCCCAAAT  1318

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1319  TAAGGACCCATTTGTCTTCTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAGATTGATG  1392

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1393  GGCCTCCCCAAATCTAATTTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCCAGATTCC  1466

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1467  CTTTTGAACACACATACCTTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTTCC  1540

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1541  CTGAGACCATGTTCTCCACAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTGGC  1614

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1615  CTCAATGGTCTTGAGTAGCAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTGAG  1688

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1689  GGTCCCAGAGCACACACCCTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGACTTTTGT  1762

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1763  GAGGGATTTTAAAAACAAAAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAAAA  1836

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1837  TGATTTTTGAAGTTTTTAAATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTTGAAGCTT  1910

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1911  TACAAGATCTGATTTTTTTCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAAAACACACATTGA  1984

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1985  AATAAGACCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATACTGACTTTGAAATATTTTTGTCACAT  2058

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2059  GTGAAAGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGCCCA  2132

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2133  GGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCA  2206

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2207  GCCTCCCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGG  2280

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2281  GGTTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAGTGC  2354

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2355  TGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCCCGT  2428

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2429  GCACATTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTTACT  2502

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2503  GCCCAGATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCATAAA  2576

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2577  CAGAAAGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTTTCA  2650

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2651  AAGGATGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAAAAT  2724

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2725  GTTTTTTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAATTA  2798

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2799  TTTTTTTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAATGCT  2872

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2873  ACGCTCTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACCTGC  2946

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2947  TGCCCGGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGCACT  3020

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3021  GTTCTTACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAAAAT  3094

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3095  AGGAACTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCTACA  3168

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3169  TGTATATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTACCT  3242

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3243  ATGATTTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAATGGA  3316

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3317  GCTATGAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTTTGA  3390

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3391  AATTTTACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAACAGC  3464

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3465  AGTGGGCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGATGA  3538

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3539  GAAGTGGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCATTCT  3612

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3613  TAATCTTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTGTGT  3686

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3687  CCAAAGCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGGTAG  3760

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3761  AAAAGTATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTAAGT  3834

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3835  TTACTTCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCTTCC  3908

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3909  TATGAAGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTTATC  3982

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3983  ATACCAAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAGCAC  4056

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4057  ATTCTTAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCTGGC  4130

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4131  TAACGGATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAACAT  4204

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4205  CTTTTGGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCACTTC  4278

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4279  TGTTTTACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTGGCT  4352

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4353  TATGAGGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCAATT  4426

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4427  TTTAAAATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATAAAG  4500

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4501  TACTTAAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATTTCT  4574

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4575  AACTGGACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACACAC  4648

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4649  TCTCTTTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTGGTT  4722

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4723  TTCATTCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTTTTC  4796

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4797  TTCAAACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTCTCG  4870

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4871  GCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTTTGA  4944

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4945  GACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGCGC  5018

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5019  ACCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATTGAG  5092

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5093  CTGAGATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAGTTT  5166

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5167  CACTGTGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCTCTA  5240

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5241  GGAAAGGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTTGAA  5314

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5315  GTATGACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGCAGA  5388

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5389  AGGTGTAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCACTC  5462

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5463  AAGTGTGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCTAAA  5536

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5537  TGATCCAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTGGAG  5610

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5611  TGTGGCTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGAGCT  5684

Query  280  -------------------------------------------------------------------------  279
                                                                                     
Sbjct 5685  TGAACCATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACGAA  5757

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