Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13098
- Subject:
- NR_135757.2
- Aligned Length:
- 5840
- Identities:
- 255
- Gaps:
- 5575
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT 74
Query 1 -----------------------------------------------ATGGCGTCCGAACTTTGTAAGACGATC 27
|||||||||||||||||||||||||||
Sbjct 75 TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC 148
Query 28 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 222
Query 102 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA 296
Query 176 ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTGAAGACAACTG------------TTAGTTTTG-------- 229
|||||||||||||||||||||||||||||||||| |.|.||| .|||||.||
Sbjct 297 ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACT----ATACCTGCACTCAAATAACATAGTTGTGGTTCCGGA 366
Query 230 ------TGG----CTT-----ACTGCTGCTCCACCCAGTGTCTGCA-------GAC---------------TTT 266
||| ||| ||| |||.||||||.| ||| .||
Sbjct 367 AGCCATTGGGTCTCTTGTAAAACT----------CCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTT 430
Query 267 TGACCTG-----------CTGAGT-------------------------------------------------- 279
||.||.| |||||.
Sbjct 431 TGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCC 504
Query 280 -------------------------------------------------------------------------- 279
Sbjct 505 AGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAG 578
Query 280 -------------------------------------------------------------------------- 279
Sbjct 579 CTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATA 652
Query 280 -------------------------------------------------------------------------- 279
Sbjct 653 CGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGGCTTC 726
Query 280 -------------------------------------------------------------------------- 279
Sbjct 727 TGTACTGCTGCACATGCTGTTCCCTCTGCTTGGAATGCTCATAACACATTTCCATTTATTCCAGCTGTGGTGCT 800
Query 280 -------------------------------------------------------------------------- 279
Sbjct 801 CCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGT 874
Query 280 -------------------------------------------------------------------------- 279
Sbjct 875 GAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCT 948
Query 280 -------------------------------------------------------------------------- 279
Sbjct 949 ACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCAC 1022
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1023 TGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAG 1096
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1097 AGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGT 1170
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1171 GTCTGCAGACTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGCTTGACACTGGGG 1244
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1245 AATCCAGCCAGTCCAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAACTCTCTAGAAATG 1318
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1319 TCATGATTGAGCTTCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCCCCCAAATTAAGG 1392
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1393 ACCCATTTGTCTTCTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAGATTGATGGGCCT 1466
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1467 CCCCAAATCTAATTTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCCAGATTCCCTTTT 1540
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1541 GAACACACATACCTTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTTCCCTGAG 1614
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1615 ACCATGTTCTCCACAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTGGCCTCAA 1688
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1689 TGGTCTTGAGTAGCAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTGAGGGTCC 1762
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1763 CAGAGCACACACCCTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGACTTTTGTGAGGG 1836
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1837 ATTTTAAAAACAAAAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAAAATGATT 1910
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1911 TTTGAAGTTTTTAAATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTTGAAGCTTTACAA 1984
Query 280 -------------------------------------------------------------------------- 279
Sbjct 1985 GATCTGATTTTTTTCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAAAACACACATTGAAATAA 2058
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2059 GACCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATACTGACTTTGAAATATTTTTGTCACATGTGAA 2132
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2133 AGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTG 2206
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2207 GAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTC 2280
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2281 CCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTT 2354
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2355 CACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAGTGCTGGGA 2428
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2429 TTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCCCGTGCACA 2502
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2503 TTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTTACTGCCCA 2576
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2577 GATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCATAAACAGAA 2650
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2651 AGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTTTCAAAGGA 2724
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2725 TGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAAAATGTTTT 2798
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2799 TTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAATTATTTTT 2872
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2873 TTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAATGCTACGCT 2946
Query 280 -------------------------------------------------------------------------- 279
Sbjct 2947 CTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACCTGCTGCCC 3020
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3021 GGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGCACTGTTCT 3094
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3095 TACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAAAATAGGAA 3168
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3169 CTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCTACATGTAT 3242
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3243 ATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTACCTATGAT 3316
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3317 TTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAATGGAGCTAT 3390
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3391 GAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTTTGAAATTT 3464
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3465 TACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAACAGCAGTGG 3538
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3539 GCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGATGAGAAGT 3612
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3613 GGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCATTCTTAATC 3686
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3687 TTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTGTGTCCAAA 3760
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3761 GCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGGTAGAAAAG 3834
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3835 TATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTAAGTTTACT 3908
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3909 TCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCTTCCTATGA 3982
Query 280 -------------------------------------------------------------------------- 279
Sbjct 3983 AGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTTATCATACC 4056
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4057 AAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAGCACATTCT 4130
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4131 TAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCTGGCTAACG 4204
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4205 GATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAACATCTTTT 4278
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4279 GGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCACTTCTGTTT 4352
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4353 TACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTGGCTTATGA 4426
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4427 GGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCAATTTTTAA 4500
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4501 AATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATAAAGTACTT 4574
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4575 AAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATTTCTAACTG 4648
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4649 GACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACACACTCTCT 4722
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4723 TTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTGGTTTTCAT 4796
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4797 TCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTTTTCTTCAA 4870
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4871 ACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTCTCGGCAGT 4944
Query 280 -------------------------------------------------------------------------- 279
Sbjct 4945 GGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTTTGAGACCA 5018
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5019 GCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGCGCACCTG 5092
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5093 CAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATTGAGCTGAG 5166
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5167 ATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAGTTTCACTG 5240
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5241 TGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCTCTAGGAAA 5314
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5315 GGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTTGAAGTATG 5388
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5389 ACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGCAGAAGGTG 5462
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5463 TAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCACTCAAGTG 5536
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5537 TGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCTAAATGATC 5610
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5611 CAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTGGAGTGTGG 5684
Query 280 -------------------------------------------------------------------------- 279
Sbjct 5685 CTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGAGCTTGAAC 5758
Query 280 -------------------------------------------------------------------- 279
Sbjct 5759 CATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACGAA 5826
