Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13145
- Subject:
- XM_017319469.2
- Aligned Length:
- 2660
- Identities:
- 1396
- Gaps:
- 1066
Alignment
Query 1 ---------------------ATGAACCTCCGGTCCCTGGGGACCCACAGAGGTGTGTCTGCTGTGGCTGGTCC 53
.|||||||.|||||.|.||||||||.||||||||||||..||||||.|||.||
Sbjct 1 ATGAACCATCCTGACTACAAGCTGAACCTTCGGTCTCCGGGGACCCCCAGAGGTGTGTCCTCTGTGGTTGGCCC 74
Query 54 ACATGACATTGGTGCTTCGCCAGGTGACAAAAAGTCAAAGAACAGGTCCACACGAGGGAAGAAAAAGAGCATAT 127
...||...||||||||||||||||||||||||||||||||||||.|||||..||||||||||||||||||||||
Sbjct 75 GAGTGCTGTTGGTGCTTCGCCAGGTGACAAAAAGTCAAAGAACAAGTCCATGCGAGGGAAGAAAAAGAGCATAT 148
Query 128 TTGAAACTTACATGTCCAAGGAGGATGTTTCAGAAGGCTTGAAGAGAGGAACACTCATCCAGGGTGTATTGAGA 201
|||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 149 TTGAAACCTACATGTCCAAGGAGGATGTTTCAGAAGGCTTGAAGAGAGGAACACTTATCCAGGGTGTATTGAGA 222
Query 202 ATTAATCCAAAGAAGTTTCATGAAGCCTTCATTCCTTCCCCGGATGGTGATCGAGACATTTTTATTGATGGGGT 275
||.||.||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||.||
Sbjct 223 ATCAACCCAAAGAAGTTTCATGAAGCCTTCATTCCTTCTCCGGATGGTGATCGGGACATTTTTATTGATGGAGT 296
Query 276 TGTTGCTCGTAATAGAGCCTTAAATGGGGATCTGGTGGTCGTGAAACTGCTTCCCGAGGAGCATTGGA------ 343
||||||||||||||||||||||||||||||.||.|||||.||.|||||||||||.|||||.||.||||
Sbjct 297 TGTTGCTCGTAATAGAGCCTTAAATGGGGACCTTGTGGTTGTAAAACTGCTTCCTGAGGATCAGTGGAAGCCAA 370
Query 344 ------------------------------------AGGTAGTTAAACCAGAGAGCAATGACAAAGAAACAGAA 381
|||.|||||||||||||||||||||||||||||.||||
Sbjct 371 GGATAACCTTGTCTCTGCCTGGAGTGCTGGGATTACAGGCAGTTAAACCAGAGAGCAATGACAAAGAAATAGAA 444
Query 382 GCTGCGTATGAATCAGATATCCCCGAGGAGCTCTGTGGACACCATCTCCCGCAACAGTCCCTGAAAAGCTATAA 455
|||.|.||||||.|.||.|||||.||.|||..|||||||||.||.|.||.|||.|||||||.||||.|||..|.
Sbjct 445 GCTACTTATGAAGCTGACATCCCTGAAGAGGGCTGTGGACATCACCCCCTGCAGCAGTCCCGGAAAGGCTGGAG 518
Query 456 TGACAGTCCTGATGTCATTGTAGAGGCTCAGTTTGATGGCAGCGACTCAGAAGATGGACATGGCATCACACAAA 529
|| ||||||||||||||.||||||||||||||||||.||||||||||||||||.|||||||||.||| ||
Sbjct 519 TG---GTCCTGATGTCATTATAGAGGCTCAGTTTGATGACAGCGACTCAGAAGATAGACATGGCAACAC-CA-- 586
Query 530 ATGTG--CTGGTTGATGGTGTTAAGAAACTCTCAGTTTGTGTTTCTGAGAAAGGAAGAGAGGATGGTGATGCAC 601
||| |||||||||||||||||||||.|.|||.|.|.|..|.||||.|.|||||.|||.|||..|..|.|.|
Sbjct 587 --GTGGCCTGGTTGATGGTGTTAAGAAATTGTCAATCTCTACTCCTGACAGAGGAAAAGAAGATTCTAGTACTC 658
Query 602 CGGTTACAAAAGATGAGACCACCTGCATTTCACAAGACACAAGAGCTTTATCGGAGAAATCCCTGCAAAGATCA 675
|.||||..||||||||||.||||..|||..||||.||||||||||..|||||.|||||.||.||.||.|.||||
Sbjct 659 CAGTTATGAAAGATGAGAACACCCCCATACCACAGGACACAAGAGGCTTATCAGAGAAGTCACTTCAGAAATCA 732
Query 676 GCAAAGGTGGTTTACATCTTGGAGAAAAAACATTCTCGAGCAGCAACCGGCTTCCTCAAACTCTTGGCTGATAA 749
|||||||||||||||||||||||||||||.|||||||||||||||||.|||.||||.|||||||||||||||||
Sbjct 733 GCAAAGGTGGTTTACATCTTGGAGAAAAAGCATTCTCGAGCAGCAACTGGCATCCTGAAACTCTTGGCTGATAA 806
Query 750 GAACAGCGAACTGTTTAGGAAATACGCCCTGTTTTCTCCCTCAGACCACCGAGTGCCTAGAATTTATGTGCCTC 823
||||||.||.|||||||.|||||||||||||||||||||.||||||||||||||.|||||||||||.||.||||
Sbjct 807 GAACAGTGACCTGTTTAAGAAATACGCCCTGTTTTCTCCTTCAGACCACCGAGTACCTAGAATTTACGTACCTC 880
Query 824 TCAAGGACTGTCCCCAGGACTTTGTGGCACGGCCTAAAGATTATGCCAACACACTGTTCATCTGCCGCATTGTG 897
||||||||||||||||||||||..||.|.||.||||||||.|.|||||||||.|||||||||||||||||..|.
Sbjct 881 TCAAGGACTGTCCCCAGGACTTCATGACCCGACCTAAAGACTTTGCCAACACGCTGTTCATCTGCCGCATCATA 954
Query 898 GACTGGAAGGAGGACTGCAATTTTGCCCTGGGGCAGCTGGCTAAGAGTCTTGGGCAGGCTGGTGAAATTGAGCC 971
|||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.|||||
Sbjct 955 GACTGGAAGGAGGACTGTAATTTTGCCCTGGGGCAACTGGCTAAGAGTCTTGGGCAGGCTGGTGAAATCGAGCC 1028
Query 972 TGAAACAGAAGGAATACTAACAGAGTATGGCGTGGATTTCTCTGATTTCTCTTCAGAAGTTCTAGAATGTCTTC 1045
||||||||||||.|||||.|||||.|||||.|||||.||||||||||||||||||||||||||.||||||||.|
Sbjct 1029 TGAAACAGAAGGGATACTGACAGAATATGGTGTGGACTTCTCTGATTTCTCTTCAGAAGTTCTTGAATGTCTCC 1102
Query 1046 CTCAAGGCCTGCCATGGACAATTCCACCAGAGGAGTTCAGCAAGAGAAGGGATTTAAGAAAAGACTGTATCTTC 1119
|||||.|||||||.||||||||.|||||.||.|||.|..||||||||||.||..||||.|||||||||||||||
Sbjct 1103 CTCAAAGCCTGCCCTGGACAATCCCACCTGATGAGGTGGGCAAGAGAAGAGACCTAAGGAAAGACTGTATCTTC 1176
Query 1120 ACCATTGACCCATCAACCGCCCGAGACCTCGATGATGCCCTCTCCTGCAAGCCACTCGCTGACGGCAACTTCAA 1193
||||||||.||||||||.||.||.|||||.||||||||||||.||||||.||..|||.||||.||||.||||.|
Sbjct 1177 ACCATTGATCCATCAACTGCTCGCGACCTTGATGATGCCCTCGCCTGCAGGCGGCTCACTGATGGCACCTTCGA 1250
Query 1194 AGTGGGAGTTCACATTGCTGACGTGAGTTACTTTGTTCCGGAGGGATCTGATCTGGATAAAGTGGCTGCCGAGA 1267
||||||.||.|||||.||.||.|||||||||||||||||.||||||||...|.||||||||||.|||||.||||
Sbjct 1251 AGTGGGCGTCCACATCGCCGATGTGAGTTACTTTGTTCCTGAGGGATCCTCTTTGGATAAAGTAGCTGCTGAGA 1324
Query 1268 GGGCTACAAGCGTCTACTTGGTTCAAAAGGTGGTCCCCATGCTTCCCAGGCTGCTGTGTGAGGAGCTGTGCAGC 1341
|.||.|||||.|||||||||||.||.||||||||||||||||||||||||||.|||||||||||.||.||||||
Sbjct 1325 GAGCCACAAGTGTCTACTTGGTCCAGAAGGTGGTCCCCATGCTTCCCAGGCTTCTGTGTGAGGAACTCTGCAGC 1398
Query 1342 CTCAACCCCATGTCCGACAAGCTGACCTTCTCTGTGATCTGGACACTGACTCCAGAGGGCAAGATCCTTGATGA 1415
||||||||||||.|.||||||||||||||||||||||||||||..|||||.||.||.||||
Sbjct 1399 CTCAACCCCATGACTGACAAGCTGACCTTCTCTGTGATCTGGAAGCTGACCCCTGAAGGCA------------- 1459
Query 1416 ATGGTTTGGCCGGACCATCATCCGCTCCTGCACCAAACTTAGCTACGAGCATGCACAGAGCATGATTGAAAGCC 1489
Sbjct 1460 -------------------------------------------------------------------------- 1459
Query 1490 CAACTGAGAAAATCCCTGCGAAAGAGCTGCCCCCCATTTCCCCAGAGCATAGCAGCGAGGAGGTACACCAGGCC 1563
Sbjct 1460 -------------------------------------------------------------------------- 1459
Query 1564 GTCTTGAATCTCCACGGAATTGCCAAGCAGTTACGCCAGCAGCGCTTTGTGGACGGCGCACTTCGTTTGGATCA 1637
|
Sbjct 1460 -------------------------------------------------------------------------A 1460
Query 1638 GCTAAAGCTTGCTTTCACTCTGGACCACGAGACCGGATTGCCTCAAGGATGTCATATCTATGAGTACCGCGAGA 1711
|||.|||||||||||.|||||||||||.|||||.|||.||||||||||||||||.||||||||||||||.||.|
Sbjct 1461 GCTGAAGCTTGCTTTTACTCTGGACCATGAGACTGGACTGCCTCAAGGATGTCACATCTATGAGTACCGAGACA 1534
Query 1712 GCAACAA------------------------------------------------------------------- 1718
|||||||
Sbjct 1535 GCAACAAGCTTGTAGAGGAGTTCATGCTCCTGGCCAACATGGCGGTGGCCCACAAGATCTTCCGCACCTTCCCT 1608
Query 1719 ------GCCCTGCTGCGCCGGCACCCCCCGCCCCAAACAAGGATGCTCAGTGACCTGGTGGAATTCTGCGACCA 1786
|||||||||||||||||.|||||.||.||.||.|.|||||||||||||||||||||.|||||.|||||
Sbjct 1609 GAGCAGGCCCTGCTGCGCCGGCATCCCCCACCACAGACGAAGATGCTCAGTGACCTGGTGGAGTTCTGTGACCA 1682
Query 1787 GATGGGGCTGCCCGTGGACTTCAGCTCCGCAGGAGCCCTCAATAAAAGCC------------------------ 1836
|||||||||||||.||||..|||||||.|||||.|||||.||||||||||
Sbjct 1683 GATGGGGCTGCCCATGGATGTCAGCTCTGCAGGGGCCCTAAATAAAAGCCTGACTAAGACATTTGGAGATGACA 1756
Query 1837 -------------------------------------------------------------------------- 1836
Sbjct 1757 AGTACTCTCTGGCCCGGAAGGAGGTGCTCACCAACATGTACTCCCGGCCCATGCAGATGGCACTGTACTTCTGC 1830
Query 1837 -------------------------------------------------------------------------- 1836
Sbjct 1831 TCTGGGATGCTGCAGGACCAGGAGCAGTTCCGGCATTATGCTCTCAACGTTCCCCTCTACACACACTTCACCTC 1904
Query 1837 -------------------------------------------------------------------------- 1836
Sbjct 1905 TCCCATCCGCCGCTTTGCTGACGTCATAGTGCACCGCCTCCTGGCTGCTGCTCTGGGCTACAGTGAACAGCCAG 1978
Query 1837 -------------------------------------------------------------------------- 1836
Sbjct 1979 ATGTGGAGCCTGATACCCTACAGAAGCAAGCTGACCACTGCAATGACCGTCGCATGGCTTCCAAACGTGTGCAG 2052
Query 1837 -------------------------------------------------------------------------- 1836
Sbjct 2053 GAGCTCAGCATCGGCCTCTTCTTCGCAGTTCTAGTAAAGGAGAGTGGCCCCCTGGAGTCCGAAGCCATGGTGAT 2126
Query 1837 -------------------------------------------------------------------------- 1836
Sbjct 2127 GGGTGTCCTGAACCAAGCTTTCGACGTGCTGGTGCTGCGCTTTGGGGTGCAGAAGCGCATCTACTGCAATGCAC 2200
Query 1837 -------------------------------------------------------------------------- 1836
Sbjct 2201 TGGCCCTGCGATCCTACAGCTTCCAGAAGGTGGGGAAGAAGCCAGAGCTCACTCTTGTTTGGGAGCCTGATGAC 2274
Query 1837 -------------------------------------------------------------------------- 1836
Sbjct 2275 CTTGAAGAGGAGCCAACACAGCAGGTCATCACCATCTTCAGCCTGGTGGATGTGGTCCTGCAGGCAGAGGCCAC 2348
Query 1837 ---------------------------------------------------------------------- 1836
Sbjct 2349 AGCCCTCAAGTACAGTGCTATCCTGAAGCGACCAGGCCTGGAGAAGGCGTCTGATGAGGAGCCTGAGGAC 2418
