Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13162
Subject:
NM_028523.3
Aligned Length:
2362
Identities:
1882
Gaps:
188

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGAGCCGGGCGCCGCTGAGAGCCGCGCGCAGCCCCCAGGGTCCCGGAGGCCCGGCCGCGCCCGCCGCCAC  74

Query    1  -------------------------------------ATGCCT-----------CTGTTCCTC----------C  16
                                                 .|.|||           ||..|||||          |
Sbjct   75  CGGCCGGGCCGCGCTGCCCAGCGCCGGCTGCTGTCCCCTCCCTCCTGGCCGCAACTCCTCCTCCAGGCCTCGAC  148

Query   17  TGCTCTTACTTGTCCTGCTGCTGCTGCTCGAGGACGCTGGAGCCCAGCAAGGTGATGGATGTGGACACACTGTA  90
            |||||   |||.|.|||||.||.||||||.||||||||||||.|||||||||||||||||||||||||||||||
Sbjct  149  TGCTC---CTTCTGCTGCTCCTACTGCTCCAGGACGCTGGAGGCCAGCAAGGTGATGGATGTGGACACACTGTA  219

Query   91  CTAGGCCCTGAGAGTGGAACCCTTACATCCATAAACTACCCACAGACCTATCCCAACAGCACTGTTTGTGAATG  164
            ||||||||||||||||||||||||||||||||.|||||||||||.||||||||.|||||||||||.||||||||
Sbjct  220  CTAGGCCCTGAGAGTGGAACCCTTACATCCATCAACTACCCACATACCTATCCTAACAGCACTGTGTGTGAATG  293

Query  165  GGAGATCCGTGTAAAGATGGGAGAGAGAGTTCGCATCAAATTTGGTGACTTTGACATTGAAGATTCTGATTCTT  238
            ||||||.||.||.|.||.||||||.||..|||||||||||||.||||||||||||||||||||||||||||.||
Sbjct  294  GGAGATTCGAGTCAGGACGGGAGAAAGGATTCGCATCAAATTCGGTGACTTTGACATTGAAGATTCTGATTATT  367

Query  239  GTCACTTTAATTACTTGAGAATTTATAATGGAATTGGAGTCAGCAGAACTGAAATAGGCAAATACTGTGGTCTG  312
            |||||.||||||||.|||.|||.|.||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct  368  GTCACCTTAATTACCTGAAAATCTTTAATGGAATTGGAGTCAGCAGAACGGAAATAGGCAAATACTGTGGTCTG  441

Query  313  GGGTTGCAAATGAACCATTCAATTGAATCAAAAGGCAATGAAATCACATTGCTGTTCATGAGTGGAATCCATGT  386
            ||.||.||||||||.||.||||||||.||.|||||||.||||.|||||.||||||||||||||||||.|||||.
Sbjct  442  GGTTTACAAATGAATCAGTCAATTGAGTCCAAAGGCAGTGAAGTCACAGTGCTGTTCATGAGTGGAACCCATGC  515

Query  387  TTCTGGACGCGGATTTTTGGCCTCATACTCTGTTATAGATAAACAAGATCTAATTACTTGTTTGGACACTGCAT  460
            |.||||.||.|||||||||||.||||||||.||||||||||||.|||||.||||.|||||||||||.||||.||
Sbjct  516  TGCTGGGCGAGGATTTTTGGCTTCATACTCAGTTATAGATAAAGAAGATTTAATCACTTGTTTGGATACTGTAT  589

Query  461  CCAATTTTTTGGAACCTGAGTTCAGTAAGTACTGCCCAGCTGGTTGTCTGCTTCCTTTTGCTGAGATATCTGGA  534
            |.||||||||||||||.||||||||||||||||||||||||||.|||||..|.|||||||||||.|||||||||
Sbjct  590  CTAATTTTTTGGAACCAGAGTTCAGTAAGTACTGCCCAGCTGGCTGTCTTTTGCCTTTTGCTGAAATATCTGGA  663

Query  535  ACAATTCCTCATGGATATAGAGATTCCTCGCCATTGTGCATGGCTGGTGTGCATGCAGGAGTAGTGTCAAACAC  608
            |||||||||||||||||.||||||||.||.||||||||.||||||||..|.|||||||||||||||||||||..
Sbjct  664  ACAATTCCTCATGGATACAGAGATTCTTCACCATTGTGTATGGCTGGAATCCATGCAGGAGTAGTGTCAAACGT  737

Query  609  GTTGGGCGGCCAAATCAGTGTTGTAATTAGTAAAGGTATCCCCTATTATGAAAGTTCTTTGGCTAACAACGTCA  682
            |.||||.|||||||||||..||||.|||||.|||||.|.|||.|||||||||||.||||||||.|||||.||||
Sbjct  738  GCTGGGTGGCCAAATCAGCATTGTGATTAGCAAAGGGACCCCATATTATGAAAGCTCTTTGGCCAACAATGTCA  811

Query  683  CATCTGTGGTGGGACACTTATCTACAAGTCTTTTTACATTTAAGACAAGTGGATGTTATGGAACACTGGGGATG  756
            |.||...|||||||.||||||||.|||||||.||||||||||||||||||||.||.|||||.||.|||||||||
Sbjct  812  CTTCCACGGTGGGATACTTATCTGCAAGTCTGTTTACATTTAAGACAAGTGGTTGCTATGGGACTCTGGGGATG  885

Query  757  GAGTCTGGTGTGATCGCGGATCCTCAAATAACAGCATCATCTGTGCTGGAGTGGACTGACCACACAGGGCAAGA  830
            ||||||||||||||.||.|||||.||.|||||||||||.||||..|||||||||||||||||||..|||||.||
Sbjct  886  GAGTCTGGTGTGATTGCCGATCCCCAGATAACAGCATCGTCTGCACTGGAGTGGACTGACCACATGGGGCAGGA  959

Query  831  GAACAGTTGGAAACCCAAAAAAGCCAGGCTGAAAAAACCTGGACCGCCTTGGGCTGCTTTTGCCACTGATGAAT  904
            ||||||.||||.|.|..|.||.||||||||||.||||||.||.||.||.|||||||||||||||||||||||..
Sbjct  960  GAACAGCTGGACAGCGGAGAAGGCCAGGCTGAGAAAACCCGGGCCTCCCTGGGCTGCTTTTGCCACTGATGAGC  1033

Query  905  ACCAGTGGTTACAAATAGATTTGAATAAGGAAAAGAAAATAACAGGCATTATAACCACTGGATCCACCATGGTG  978
            |.||||||.|.||.|||||..|.||.|||||.|||||.||||||||.||..||||||||||.||.||||||.|.
Sbjct 1034  ATCAGTGGCTGCAGATAGACCTTAACAAGGAGAAGAAGATAACAGGTATCGTAACCACTGGGTCTACCATGATA  1107

Query  979  GAGCACAATTACTATGTGTCTGCCTACAGAATCCTGTACAGTGATGATGGGCAGAAATGGACTGTGTACAGAGA  1052
            ||.||||.||||||||||||||||||||||.|||||||||||||.||||||||||.||||||||||||||||||
Sbjct 1108  GAACACAGTTACTATGTGTCTGCCTACAGAGTCCTGTACAGTGACGATGGGCAGAGATGGACTGTGTACAGAGA  1181

Query 1053  GCCTGGTGTGGAGCAAGATAAGATATTTCAAGGAAACAAAGATTATCACCAGGATGTGCGTAATAACTTTTTGC  1126
            .|||||||||||.||.||.||||||||||||||||||||||||||||||.|||||||.||||||||||||||||
Sbjct 1182  ACCTGGTGTGGACCAGGACAAGATATTTCAAGGAAACAAAGATTATCACAAGGATGTTCGTAATAACTTTTTGC  1255

Query 1127  CACCAATTATTGCACGTTTTATTAGAGTGAATCCTACCCAATGGCAGCAGAAAATTGCCATGAAAATGGAGCTG  1200
            |||||||||||||||||||.|||||||||||.|||..|||.|||||.||||||||||||||||||.||||.|||
Sbjct 1256  CACCAATTATTGCACGTTTCATTAGAGTGAACCCTGTCCAGTGGCAACAGAAAATTGCCATGAAAGTGGAACTG  1329

Query 1201  CTCGGATGTCAGTTTATTCCTAAAGGTCGTCCTCCAAAACTTACTCAACCTCCACCTCCTCGGAACAGCAATGA  1274
            ||||||||||||||||.||..||||||||.|.||||||.||||      |||||||||||||||||.|||||.|
Sbjct 1330  CTCGGATGTCAGTTTACTCTCAAAGGTCGCCTTCCAAAGCTTA------CTCCACCTCCTCGGAACGGCAATAA  1397

Query 1275  CCTCAAAAACACTACAGCCCCTCCAAAAATAGCCAAAGGTCGTGCCCCAAAATTTACGCAACCACTACAACCTC  1348
            |||||.|||.||||||||.|.|||.|||.|||..||||||||||||||.||||||||.|||...||.|||||||
Sbjct 1398  CCTCAGAAATACTACAGCTCGTCCCAAACTAGGTAAAGGTCGTGCCCCTAAATTTACTCAAGTGCTCCAACCTC  1471

Query 1349  GCAGTAGCAATGAATTTCCTGCACAGACAGAACAAACAACTGCCAGTCCTGATATCAGAAATACTACCGTAACT  1422
            |.|||||.||||||.||||||..|||.|.|...|.||||||.|||.|||||||||.|.|||.||.||.||||||
Sbjct 1472  GAAGTAGGAATGAACTTCCTGTGCAGCCGGCGGAGACAACTACCACTCCTGATATAAAAAACACGACTGTAACT  1545

Query 1423  CCAAATGTAACCAAAGATGTAGCGCTGGCTGCAGTTCTTGTCCCTGTGCTGGTCATGGTCCTCACTACTCTCAT  1496
            ||.|.|||||||||||||||.||.||||||||.|||||.|||||||||||||||||||.||||||.||.|||||
Sbjct 1546  CCCAGTGTAACCAAAGATGTCGCACTGGCTGCCGTTCTGGTCCCTGTGCTGGTCATGGCCCTCACCACACTCAT  1619

Query 1497  TCTCATATTAGTGTGTGCTTGGCACTGGAGAAACAGAAAGAAAAAAACTGAAGGCACCTATGACTTACCTTACT  1570
            .|||||..||||||||||||||||||||||||||||.|||||.||||||||||||.|||||||.|||||..|||
Sbjct 1620  CCTCATTCTAGTGTGTGCTTGGCACTGGAGAAACAGGAAGAAGAAAACTGAAGGCGCCTATGATTTACCCCACT  1693

Query 1571  GGGACCGGGCAGGTTTTTATTTAATGGTCTCTTTGGCTTGCCGTCACAATGAAGGTTGGTGGAAAGGAATGAAG  1644
            ||||.|||||                                          ||||||||||||||||||||||
Sbjct 1694  GGGATCGGGC------------------------------------------AGGTTGGTGGAAAGGAATGAAG  1725

Query 1645  CAGTTTCTTCCTGCAAAAGCAGTGGACCATGAGGAAACCCCAGTTCGCTATAGCAGCAGTGAAGTTAATCACCT  1718
            |||.||||.|||||.||..|.||||||||.|||||.||.|||||.|||||.||||..||||||||.|.||||||
Sbjct 1726  CAGCTTCTCCCTGCCAAGTCGGTGGACCACGAGGAGACGCCAGTGCGCTACAGCACTAGTGAAGTCAGTCACCT  1799

Query 1719  GAGTCCAAGAGAAGTCACCACAGTGCTGCAGGCTGACTCTGCAGAGTATGCTCAGCCACTGGTAGGAGGAATTG  1792
            ||||.|.||.|||||||||||||||||||||||.|||||||||||.|||||.|||||.||.||.||||||||||
Sbjct 1800  GAGTGCCAGGGAAGTCACCACAGTGCTGCAGGCCGACTCTGCAGAATATGCACAGCCCCTCGTGGGAGGAATTG  1873

Query 1793  TTGGTACACTTCATCAAAGATCTACCTTTAAACCAGAAGAAGGAAAAGAAGCAGGCTATGCAGACCTAGATCCT  1866
            ||||.|||||.|||||.|||||.|||||||||||.||.|||||.||.||||||||||||||||||||.||||||
Sbjct 1874  TTGGCACACTCCATCAGAGATCCACCTTTAAACCTGAGGAAGGGAAGGAAGCAGGCTATGCAGACCTCGATCCT  1947

Query 1867  TACAACTCACCAGGGCAGGAAGTTTATCATGCCTATGCTGAACCACTCCCAATTACGGGGCCTGAGTATGCAAC  1940
            ||||||||.|||..|||||||||.||.||.|||||||||||||||||.||..|.||||||||||||||.|||||
Sbjct 1948  TACAACTCTCCAATGCAGGAAGTGTACCACGCCTATGCTGAACCACTGCCCGTAACGGGGCCTGAGTACGCAAC  2021

Query 1941  CCCAATCATCATGGACATGTCAGGGCACCCCACAACTTCAGTTGGTCAGCCCTCCACATCCACTTTCAAGGCTA  2014
            |||.|||.||||||||||||||||||||||||||.|.||||||||||.|||||||||||||||.|||||..||.
Sbjct 2022  CCCGATCGTCATGGACATGTCAGGGCACCCCACAGCCTCAGTTGGTCTGCCCTCCACATCCACCTTCAAAACTG  2095

Query 2015  CGGGGAACCAACCTCCCCCACTAGTGGGAACTTACAATACACTTCTCTCCAGGACTGACAGCTGCTCCTCAGCC  2088
            |.||||.|||.||||.|.|..||||||||||||||||.||.|||||||||||||||||||||||.|||||||.|
Sbjct 2096  CAGGGACCCAGCCTCACGCTTTAGTGGGAACTTACAACACTCTTCTCTCCAGGACTGACAGCTGTTCCTCAGGC  2169

Query 2089  CAGGCCCAGTATGATACCCCGAAAGCTGGGAAGCCAGGT-CTACCTGCCCCAGACGAATTGGTGTACCAGGTGC  2161
            |||||.||||||||.|||||.||||.|||||||.|||.| |||    |||||||.|||.||||.||||||||||
Sbjct 2170  CAGGCTCAGTATGACACCCCAAAAGGTGGGAAGTCAGCTGCTA----CCCCAGAGGAACTGGTATACCAGGTGC  2239

Query 2162  CACAGAGCACACAAGAAGTATCAGGAGCAGGAAGGGATGGGGAATGTGATGTTTTTAAAGAAATCCTT  2229
            |.||||||||.||.||..|||||||||||||||||||||.|.|.|.|||||.||||||||||||||||
Sbjct 2240  CCCAGAGCACCCAGGAGCTATCAGGAGCAGGAAGGGATGAGAAGTTTGATGCTTTTAAAGAAATCCTT  2307

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