Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13173
- Subject:
- NM_001177382.2
- Aligned Length:
- 3102
- Identities:
- 1643
- Gaps:
- 1458
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGGGATTTCGGGTTTGGGGTGCTGCAGACCGCCCCGCTCCGAAGTAGCAGTCCTGGGCCCCTGTTCTGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGAGGCGTATGGTCCTTACGCCGTGGGGTCCGTCAACCCGCTGCCCTCCGCCACGCCCTTCGGCCCACTGTCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACCACCGTTGCCTGTCACCGGCTTCTTAGAGGCCGCCTCCCCCTTCTCCGTCCCCCTCGGCGGCGGCGCGGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCCCGGCCGCCGCCGCTTCCTCTTCCTCCCCGTTCCTGGCGCATCAGCAGACCATGCAGGATGAGCTGCTTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGGCTGACACAGCAGCCGGCGCGGCCGCTTTCGGGGGCGGCGGCCACGGAGAAACTCCCCGACCACCACCCCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGGCGGCACGATCGCGGGTGTGACCCACCTCCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACCACCCCTCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCCTCCTCCGCCTCCTCCTGCTGCTGCTGCCGCACCTCCTCCCCGCAGGACTTCAGTAAGCGGCAGCAGCAGCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGAGCAGCCAGAAGAGGAAAGAGTTCAGCCCTCCCCACCTTCCCCACCCTCCGGACTCGAAGCCGCCGCCGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CGCCTCCGCCGCTCCACTGCCCCGGTCGGTTCAGCCCGCCGCCGCCGCCAGCCGGCCCGCTCCTCCAGCCGGCG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGCTCGCTCAGCGCCAGCAGCAACAGCCGCCGCAGCAGTTCAGCCTCCTGCATCAGCAGCACCTCTCGCCGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGACTTCGCCCCGCGGCAGCGTCCGGCAGACCTGCCCCCGCTCCCGCAGCTCCCTCCCTCGCCGCCTGCAGCCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGCGGCGCCGCCACGGAGGCGCGGGCAGCCCTCGCAAGACCCCAGCCGCGGGCGAGGGCAGCGCCGCCGAGTCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCCAATGCGGGCTTGGCCTCCTCGACGCCGGTGAACCCCGCGCCGGGCTCCATGGAGTCCCCCAACCACCCTCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCTCAACAGTCCCAGTAACCTCCTGCCCGGAGGTGCGCTTGGCGCGGGCGCCTTCAGCAGCCTGCAGAGCCCGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACCTTCCACACCCGGGCGGCGGCGGCGGCGGCGGGGGCGGGGGGCCCCCAGGAGGCGGAGGGGGAGGCGGCTCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCGTCGCCGCCGCCGCTGCCCGGCTTCGGCACCCCCTGGTCGGTGCAGACCGCGTCGCCGCCACCCCAGCCCCA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCAGCCGCCGCCGACCCAGCCGCAGCAGCAGCCGCCGCCACCCCAGCAGCCGCCCCAGCCGCAGCCGCAGCCGC 1258
Query 1 -----------------------------------------------------ATGCCGCCGCCCAGCCCCGAC 21
|||||||||||||||||||||
Sbjct 1259 CCGGCTCGTCTGCCACCACCCCGGGCGGCGGCAGCGGCGGCTCGCTCAGCGCCATGCCGCCGCCCAGCCCCGAC 1332
Query 22 TCAGAGAACGGCTTCTACCCCGGGCTGCCGTCGTCCATGAACCCGGCCTTCTTCCCTAGCTTCTCGCCCGTGTC 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TCAGAGAACGGCTTCTACCCCGGGCTGCCGTCGTCCATGAACCCGGCCTTCTTCCCTAGCTTCTCGCCCGTGTC 1406
Query 96 GCCGCACGGCTGCACTGGGCTCAGCGTT---------------------------------------------- 123
||||||||||||||||||||||||||||
Sbjct 1407 GCCGCACGGCTGCACTGGGCTCAGCGTTCCGACGAGCGGCGGCGGCGGCGGCGGCTTCGGCGGCCCCTTCTCGG 1480
Query 124 --------------------CCGCCGCCCGCCATGAATATACCTCAACAGCAGCCCCCGCCGCCCGCGGCGCCG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTACCGCTGTGCCCCCTCCGCCGCCGCCCGCCATGAATATACCTCAACAGCAGCCCCCGCCGCCCGCGGCGCCG 1554
Query 178 CAGCAGCCGCAGAGCCGGAGGTCGCCCGTCAGCCCGCAGCTCCAGCAGCAGCACCAGGCGGCGGCCGCCGCCTT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAGCAGCCGCAGAGCCGGAGGTCGCCCGTCAGCCCGCAGCTCCAGCAGCAGCACCAGGCGGCGGCCGCCGCCTT 1628
Query 252 CCTGCAGCAGAGGAACTCCTATAACCACCACCAGCCTCTTCTGAAACAGTCTCCCTGGAGCAACCATCAGAGCA 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCTGCAGCAGAGGAACTCCTATAACCACCACCAGCCTCTTCTGAAACAGTCTCCCTGGAGCAACCATCAGAGCA 1702
Query 326 GTGGCTGGGGCACTGGAAGTATGTCCTGGGGAGCAATGCATGGCAGAGATCATCGTAGAACCGGAAACATGGGA 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GTGGCTGGGGCACTGGAAGTATGTCCTGGGGAGCAATGCATGGCAGAGATCATCGTAGAACCGGAAACATGGGA 1776
Query 400 ATCCCAGGAACTATGAATCAGATATCTCCATTGAAGAAACCGTTTTCTGGTAATGTCATAGCACCACCGAAATT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ATCCCAGGAACTATGAATCAGATATCTCCATTGAAGAAACCGTTTTCTGGTAATGTCATAGCACCACCGAAATT 1850
Query 474 TACTCGCTCAACTCCATCACTGACTCCAAAATCTTGGATTGAAGATAATGTGTTCAGAACAGACAACAATAGTA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TACTCGCTCAACTCCATCACTGACTCCAAAATCTTGGATTGAAGATAATGTGTTCAGAACAGACAACAATAGTA 1924
Query 548 ATACACTCTTACCCTTACAGGTAAGA-------------------------------AT--------------- 575
||||||||||||||||||||||.||| ||
Sbjct 1925 ATACACTCTTACCCTTACAGGTGAGATCTAGTTTGCAGTTGCCAGCTTGGGGCTCAGATTCACTCCAAGATAGT 1998
Query 576 -----------------------------------GGATCGAAGTAGAATGTATGACAGTTTGAATATGCACTC 614
|||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGGTGCACTGCAGCCGGAACATCCAGAATAGACCAGGATCGAAGTAGAATGTATGACAGTTTGAATATGCACTC 2072
Query 615 TTTGGAAAATTCCCTTATCGATATTATGAGAGCAGAGCATGATCCTCTTAAGGGTCGATTGAGCTATCCACATC 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TTTGGAAAATTCCCTTATCGATATTATGAGAGCAGAGCATGATCCTCTTAAGGGTCGATTGAGCTATCCACATC 2146
Query 689 CAGGAACTGACAATCTGTTGATGTTAAATGCAAGGAGTTATGGGCGAAGACGAGGTCGTTCTTCCCTCTTTCCA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CAGGAACTGACAATCTGTTGATGTTAAATGCAAGGAGTTATGGGCGAAGACGAGGTCGTTCTTCCCTCTTTCCA 2220
Query 763 ATAGATGATGGCTTGCTTGATGATGGTCACAGTGATCAAGTTGGAGTTTTAAATTCACCCACCTGTTATTCAGC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 ATAGATGATGGCTTGCTTGATGATGGTCACAGTGATCAAGTTGGAGTTTTAAATTCACCCACCTGTTATTCAGC 2294
Query 837 TCACCAAAATGGAGAGCGAATAGAACGCTTCTCTCGAAAAGTTTTTGTTGGTGGTCTTCCTCCAGATATTGATG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TCACCAAAATGGAGAGCGAATAGAACGCTTCTCTCGAAAAGTTTTTGTTGGTGGTCTTCCTCCAGATATTGATG 2368
Query 911 AAGATGAAATAACTGCTAGCTTCAGAAGATTTGGGCCTTTGGTAGTAGATTGGCCTCATAAAGCAGAAAGCAAG 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AAGATGAAATAACTGCTAGCTTCAGAAGATTTGGGCCTTTGGTAGTAGATTGGCCTCATAAAGCAGAAAGCAAG 2442
Query 985 TCCTATTTTCCACCAAAAGGCTATGCATTTCTTCTCTTTCAAGAAGAGAGCTCAGTTCAGGCACTCATTGATGC 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 TCCTATTTTCCACCAAAAGGCTATGCATTTCTTCTCTTTCAAGAAGAGAGCTCAGTTCAGGCACTCATTGATGC 2516
Query 1059 TTGTATTGAAGAAGATGGAAAACTCTATCTGTGTGTTTCTAGCCCTACTATCAAGGACAAACCAGTTCAAATAC 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TTGTATTGAAGAAGATGGAAAACTCTATCTGTGTGTTTCTAGCCCTACTATCAAGGACAAACCAGTTCAAATAC 2590
Query 1133 GTCCTTGGAATTTAAGTGATAGTGATTTTGTAATGGATGGTTCTCAGCCTTTGGATCCCCGAAAAACAATTTTT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 GTCCTTGGAATTTAAGTGATAGTGATTTTGTAATGGATGGTTCTCAGCCTTTGGATCCCCGAAAAACAATTTTT 2664
Query 1207 GTTGGAGGTGTTCCTAGGCCATTAAGGGCTGTGGAACTTGCTATGATCATGGACCGGCTGTATGGTGGAGTTTG 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 GTTGGAGGTGTTCCTAGGCCATTAAGGGCTGTGGAACTTGCTATGATCATGGACCGGCTGTATGGTGGAGTTTG 2738
Query 1281 TTATGCAGGAATTGATACAGATCCTGAGCTAAAATACCCAAAAGGTGCTGGGCGAGTTGCTTTCTCCAATCAGC 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 TTATGCAGGAATTGATACAGATCCTGAGCTAAAATACCCAAAAGGTGCTGGGCGAGTTGCTTTCTCCAATCAGC 2812
Query 1355 AGAGCTATATTGCTGCCATTAGTGCTCGGTTTGTTCAGCTTCAGCATGGTGATATTGATAAACGTGTGGAGGTA 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 AGAGCTATATTGCTGCCATTAGTGCTCGGTTTGTTCAGCTTCAGCATGGTGATATTGATAAACGTGTGGAGGTA 2886
Query 1429 AAGCCATATGTGCTAGATGACCAGATGTGTGATGAATGCCAGGGCGCACGCTGTGGTGGAAAATTTGCTCCCTT 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 AAGCCATATGTGCTAGATGACCAGATGTGTGATGAATGCCAGGGCGCACGCTGTGGTGGAAAATTTGCTCCCTT 2960
Query 1503 TTTTTGTGCCAATGTCACTTGCCTGCAGTATTACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGTGCTGGAC 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 TTTTTGTGCCAATGTCACTTGCCTGCAGTATTACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGTGCTGGAC 3034
Query 1577 GTGAGTTCCATAAGCCATTGGTAAAGGAAGGTGCTGATCGCCCACGTCAGATCCACTTCCGCTGGAAC 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 GTGAGTTCCATAAGCCATTGGTAAAGGAAGGTGCTGATCGCCCACGTCAGATCCACTTCCGCTGGAAC 3102
