Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13173
- Subject:
- NM_001308193.1
- Aligned Length:
- 1661
- Identities:
- 771
- Gaps:
- 712
Alignment
Query 1 ATGCCGCCGCCCAGCCCCGACTCAGAGAACGGCTTCTACCCCGGGCTGCCGTCGTCCATGAACCCGGCCTTCTT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CCCTAGCTTCTCGCCCGTGTCGCCGCACGGCTGCACTGGGCTCAGCGTTCCGCCGCCCGCCATGAATATACCTC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AACAGCAGCCCCCGCCGCCCGCGGCGCCGCAGCAGCCGCAGAGCCGGAGGTCGCCCGTCAGCCCGCAGCTCCAG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CAGCAGCACCAGGCGGCGGCCGCCGCCTTCCTGCAGCAGAGGAACTCCTATAACCACCACCAGCCTCTTCTGAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 ACAGTCTCCCTGGAGCAACCATCAGAGCAGTGGCTGGGGCACTGGAAGTATGTCCTGGGGAGCAATGCATGGCA 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GAGATCATCGTAGAACCGGAAACATGGGAATCCCAGGAACTATGAATCAGATATCTCCATTGAAGAAACCGTTT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TCTGGTAATGTCATAGCACCACCGAAATTTACTCGCTCAACTCCATCACTGACTCCAAAATCTTGGATTGAAGA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TAATGTGTTCAGAACAGACAACAATAGTAATACACTCTTACCCTTACAGGTAAGAATGGATCGAAGTAGAATGT 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 ATGACAGTTTGAATATGCACTCTTTGGAAAATTCCCTTATCGATATTATGAGAGCAGAGCATGATCCTCTTAAG 666
||||||||..||||.|.|||.||.||.||.||.||||||||.||..|||||.|..||||
Sbjct 1 --------------ATGCACTCACTGGAGAGTTCACTCATTGACATAATGAGAGCTGAAAATGATACCATTAA- 59
Query 667 GGTCGATTGAGCTATCCACATCCAGGAACTGACAATCTGTTGATGTTAAATGCAAGGAGTTATGGGCGAAGACG 740
Sbjct 60 -------------------------------------------------------------------------- 59
Query 741 AGGTCGTTCTTCCCTCTTTCCAATAGATGATGGCTTGCTT-GATGATGGTCACAGTGATCA----------AGT 803
|||||..|||||.||.||||||||.||.|||||.|| ||| ||||||||.|...|.||||| |||
Sbjct 60 AGGTCAGTCTTCACTGTTTCCAATGGAAGATGGATT-CTTGGATGATGGCCGTGGGGATCAGCCTCTTCATAGT 132
Query 804 ----TGGAGTTTTAAATTCACC-CACCTGTTATTCAGCTCACCAAAATGGAGAGCGAATAGAACGCTTCTCTCG 872
||| .|||||| ||| |..||||| ||||||.|||||.||..||.|.|||||.|..|||||
Sbjct 133 GGCCTGG--------GTTCACCTCAC---TGCTTCAG-TCACCAGAATGGGGAAAGAGTGGAACGATATTCTCG 194
Query 873 AAAAGTTTTTGTTGGTGGTCTTCCTCCAGATATTGATGAAGATGAAATAACTGCTAGCTTCAGAAGATTTGGGC 946
|||.||.|||||.||.||..|.||||||||.||||||||||||||.||.||.|||||.||..|..|.|||||.|
Sbjct 195 AAAGGTGTTTGTAGGCGGATTGCCTCCAGACATTGATGAAGATGAGATCACAGCTAGTTTTCGTCGCTTTGGCC 268
Query 947 CTTTGGTAGTAGATTGGCCTCATAAAGCAGAAAGCAAGTCCTATTTTCCACCAAAAGGCTATGCATTTCTTCTC 1020
||.||.|.||.|||||||||||||||||.||.|||||.|||||||||||.||.||||||||||||||.||.||.
Sbjct 269 CTCTGATTGTGGATTGGCCTCATAAAGCTGAGAGCAAATCCTATTTTCCTCCTAAAGGCTATGCATTCCTGCTG 342
Query 1021 TTTCAAGAAGAGAGCTCAGTTCAGGCACTCATTGATGCTTGTATTGAAGAAGATGGAAAACTCTATCTGTGTGT 1094
||||||||.||.|||||.||.|||||.|||||||||||.||.|||||||||||||||||||||||.||.|||||
Sbjct 343 TTTCAAGATGAAAGCTCTGTGCAGGCTCTCATTGATGCATGCATTGAAGAAGATGGAAAACTCTACCTTTGTGT 416
Query 1095 TTCTAGCCCTACTATCAAGGACAAACCAGTTCAAATACGTCCTTGGAATTTAAGTGATAGTGATTTTGTAATGG 1168
.||.||.||.|||||||||||.||.|||||.||.||.||.|||||||||.|.|||||.|||||.|||||.||||
Sbjct 417 ATCAAGTCCCACTATCAAGGATAAGCCAGTCCAGATTCGGCCTTGGAATCTCAGTGACAGTGACTTTGTGATGG 490
Query 1169 ATGGTTCTCAGCCTTTGGATCCCCGAAAAACAATTTTTGTTGGAGGTGTTCCTAGGCCATTAAGGGCTGTGGAA 1242
|||||||.|||||..|.||.||.||||||||.||.||||||||.|||||||||.|.||||||.|.||||||||.
Sbjct 491 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTTGGTGGTGTTCCTCGACCATTACGAGCTGTGGAG 564
Query 1243 CTTGCTATGATCATGGACCGGCTGTATGGTGGAGTTTGTTATGCAGGAATTGATACAGATCCTGAGCTAAAATA 1316
|||||.|||||.|||||.|||||.|||||.||.||.||.||.||.||.||||||||.||.||||||||||||||
Sbjct 565 CTTGCGATGATAATGGATCGGCTATATGGAGGTGTGTGCTACGCTGGGATTGATACCGACCCTGAGCTAAAATA 638
Query 1317 CCCAAAAGGTGCTGGGCGAGTTGCTTTCTCCAATCAGCAGAGCTATATTGCTGCCATTAGTGCTCGGTTTGTTC 1390
|||||||||.||||||.|||||||.|||||.|||||.|||||.||.||.|||||.||.|||||.||.|||||||
Sbjct 639 CCCAAAAGGAGCTGGGAGAGTTGCGTTCTCTAATCAACAGAGTTACATAGCTGCTATCAGTGCCCGCTTTGTTC 712
Query 1391 AGCTTCAGCATGGTGATATTGATAAACGTGTGGAGGTAAAGCCATATGTGCTAGATGACCAGATGTGTGATGAA 1464
||||.||||||||.||.||.||||||||.|||||.||.|||||||||||..|.|||||.|||.|||||||||||
Sbjct 713 AGCTGCAGCATGGAGAGATAGATAAACGGGTGGAAGTTAAGCCATATGTCTTGGATGATCAGCTGTGTGATGAA 786
Query 1465 TGCCAGGGCGCACGCTGTGGTGGAAAATTTGCTCCCTTTTTTTGTGCCAATGTCACTTGCCTGCAGTATTACTG 1538
||.|||||.||.||.|||||.||.|||||||||||.|||||.|||||.|||||.||.||.||||||||||||||
Sbjct 787 TGTCAGGGGGCCCGTTGTGGGGGGAAATTTGCTCCATTTTTCTGTGCTAATGTTACCTGTCTGCAGTATTACTG 860
Query 1539 TGAGTTTTGTTGGGCAAATATCCACTCTCGTGCTGGACGTGAGTTCCATAAGCCATTGGTAAAGGAAGGTGCTG 1612
|||.|.|||.|||||...||||||.|||||||||||..|.||.|||||.|||||..||||.||||||||.|.||
Sbjct 861 TGAATATTGCTGGGCTGCTATCCATTCTCGTGCTGGCAGGGAATTCCACAAGCCCCTGGTGAAGGAAGGCGGTG 934
Query 1613 ATCGCCCACGTCAGA-TCCACTTCCGCTGGAAC 1644
|.|||||.||.||.| |.|| ||||||||||||
Sbjct 935 ACCGCCCTCGGCATATTTCA-TTCCGCTGGAAC 966
