Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13309
- Subject:
- NM_001081123.1
- Aligned Length:
- 1780
- Identities:
- 1047
- Gaps:
- 557
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGTGGATGCTGGACTGCCTATTCGCATCGGCCTTTGAGCCCCGCCCCCGCCGTGTGAGCGTCCTGGGAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCCCAGGACAGAACTCAGACCGCAGCATGGACATGGTATCCATTCACAGCCTCTCTGAGCTGGAGCGCCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGCAAGAGACTGCTTACCACGAACTCGTGGCCAGACATTTCCTCTCTGAATTCAAGCCGGACAGAGCTCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCACTGACCGTCCAAACACCCTGGAGAAGTGGTTTTTGATGCTGAGAGGACAAGACAGGGCTGCATCACTCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACCTTTGGCATCCGCCTGGAAGAGGTACTGGTGAACGAGCTTACCCGTCGCAAGCAGCGTGAACTGACACCCA 370
Query 1 --ATGCAGGTTGAAGAAGCCACCGGTCAGGCTGCGGGCCGTCGTCGGGGAAACGTGGTGCGAAGGGTGTTTGGC 72
||||||||||||||...||.||||....|||...|.||||||||||||||||||||||.|||..||.||||.
Sbjct 371 CGATGCAGGTTGAAGATATCAACGGTTCTACTGGTCGTCGTCGTCGGGGAAACGTGGTGCAAAGAATGCTTGGA 444
Query 73 CGCATCCGGCGCTTTTTCAGTCGCAGGCGGAATGAGCCCACCTTGCCCCGGGAGTTCACTCGCCGTGGGCGTCG 146
|||||..||||||||||||||||||||.||||||||||||||.||||..|.|||||||||||||||||.|||||
Sbjct 445 CGCATGAGGCGCTTTTTCAGTCGCAGGAGGAATGAGCCCACCCTGCCTAGAGAGTTCACTCGCCGTGGACGTCG 518
Query 147 AGGTGCAGTGTCTGTGGATAGTCTGGCTGAGCTGGAAGACGGAGCCCTGCTGCTGCAGACCCTGCAGCTTTCAA 220
|||||||||.||||..|||||....|.|||.|||||..|||||||||||||||||||||.|||||||||.||..
Sbjct 519 AGGTGCAGTTTCTGCAGATAGCGCAGATGAACTGGAGAACGGAGCCCTGCTGCTGCAGATCCTGCAGCTCTCCC 592
Query 221 AAATTTCCTTTCCAATTGGCCAACGACTTCTGGGATCCAAAAGGAAGATGAGTCTCAATCCGATTGCGAAACAA 294
|..||||.|..||.|||||.||.||.||||||||||||||.|||||||||||.|||||.||.|||||..|||||
Sbjct 593 AGCTTTCATCGCCTATTGGACAGCGGCTTCTGGGATCCAAGAGGAAGATGAGCCTCAACCCAATTGCTCAACAA 666
Query 295 ATCCCCCAGGTTGTTGAGGCTTGCTGCCAATTCATTGAAAAACATGGCTTAAGCGCAGTGGGGATTTTTACCCT 368
|||||.|||.||||||||.||||.|||.||||||||||.|||||||||||||||.|||||||||||||.|||.|
Sbjct 667 ATCCCTCAGATTGTTGAGACTTGTTGCAAATTCATTGAGAAACATGGCTTAAGCTCAGTGGGGATTTTCACCAT 740
Query 369 TGAATACTCCGTGCAGCGAGTGCGTCAGCTCCGTGAAGAATTTGATCAAGGTCTGGATGTAGTGCTGGATGACA 442
|||||||||..|||.|.|.||||.|.||||||||||...||||||..||||.||||||.|.||.||||||||||
Sbjct 741 TGAATACTCTCTGCGGAGGGTGCTTGAGCTCCGTGAGTTATTTGACAAAGGCCTGGATATTGTACTGGATGACA 814
Query 443 ATCAGAATGTGCATGATGTGGCTGCACTCCTCAAGGAGTTTTTCCGTGACATGAAGGATTCTCTGCTGCCAGAT 516
.|..||||||.|||||||||||||..|||||||||||||||||.|||||.||||||||..||||||||||.|||
Sbjct 815 GTGTGAATGTCCATGATGTGGCTGAGCTCCTCAAGGAGTTTTTTCGTGAGATGAAGGACCCTCTGCTGCCTGAT 888
Query 517 GATCTGTACATGTCATTCCTCCTGACAGCAACTTTAAAGCCCCAGGATCAGCTTTCTGCCCTGCAGTTGCTGGT 590
||||||||||||||.|||||||||||.||||||.|.||||||.||||||||.||||||||||||||.|.|||||
Sbjct 889 GATCTGTACATGTCCTTCCTCCTGACTGCAACTCTGAAGCCCAAGGATCAGGTTTCTGCCCTGCAGCTTCTGGT 962
Query 591 CTACCTGATGCCACCCTGCCACAGTGATACCCTGGAGCGTCTGCTGAAGGCCCTGCATAAAATCACTGAGAACT 664
.||.|||||||||||.||||||||||||||.||.||.||||||||||||||.||||||||||||||||||||||
Sbjct 963 TTATCTGATGCCACCTTGCCACAGTGATACTCTCGAACGTCTGCTGAAGGCTCTGCATAAAATCACTGAGAACT 1036
Query 665 GCGAGGACTCAATTGGCATTGATGGACAGTTGGTCCCAGGCAACCGTATGACTTCCACTAACTTGGCCTTGGTG 738
|.||.|||||.||||||.|||||||||||.||||.|||||.|||||.|||||||||||.||||||||.||||||
Sbjct 1037 GTGAAGACTCCATTGGCGTTGATGGACAGCTGGTTCCAGGTAACCGAATGACTTCCACCAACTTGGCTTTGGTG 1110
Query 739 TTTGGATCTGCTCTCCTGAAAAAAGGAAAGTTTGGCAAGAGAGAGTCCAGGAAAACAAAGCTGGGGATTGATCA 812
||||||.|||||||||||||.||.||.|||||.|.|||.|..||.||||||||.||.||.||||||||||||||
Sbjct 1111 TTTGGAACTGCTCTCCTGAAGAAGGGGAAGTTGGCCAACAAGGAATCCAGGAAGACTAAACTGGGGATTGATCA 1184
Query 813 CTATGTTGCTTCTGTCAATGTGGTCCGTGCCATGATTGATAACTGGGATGTCCTCTTCCAGGTGCCTCCCCATA 886
|||||||||.|||||||||||.||||||||||||||||||||||||||..||||||||||||||||.|||||||
Sbjct 1185 CTATGTTGCATCTGTCAATGTTGTCCGTGCCATGATTGATAACTGGGACATCCTCTTCCAGGTGCCCCCCCATA 1258
Query 887 TTCAGAGGCAGGTTGCTAAGCGCGTGTGGAAGTCCAGCCCGGAAGCACTTGATTTTATCAGACGCAGGAACTTG 960
||||||.|.|||||||||||||.|||||||||||||||||.|||||.||.|||||||||||||||.||||..||
Sbjct 1259 TTCAGAAGGAGGTTGCTAAGCGTGTGTGGAAGTCCAGCCCTGAAGCCCTGGATTTTATCAGACGCCGGAATCTG 1332
Query 961 AGGAAGATCCAGAGTGCACGCATAAAGATGGAAGAGGATGCACTACTTTCTGATCCAGTGGAAACCTCTGCTGA 1034
|||||||||||||||||.|||||||||||||||||||||||..|||||||||||||||||||||.|||||||||
Sbjct 1333 AGGAAGATCCAGAGTGCTCGCATAAAGATGGAAGAGGATGCTTTACTTTCTGATCCAGTGGAAAACTCTGCTGA 1406
Query 1035 AGCCCGGGCTGCTGTCCTTGCTCAAAGCAAGCCTTCTGATGA-------------------------------- 1076
|||||.|||||||.||||||||||.|||.||||.|.||||||
Sbjct 1407 AGCCCAGGCTGCTATCCTTGCTCAGAGCCAGCCCTTTGATGAAGACCCCGAAGGAGCCCCAGATGTGCACGAGG 1480
Query 1077 -------------------------------------------------------------------------- 1076
Sbjct 1481 TCTTGAATGATAACCTGAACTATGACTTTGAAGACGAATCGGATTTTGAAGACCAGGACCATCTGGATCTTGCA 1554
Query 1077 -----------------------------------------------------------------AGGTTCCTC 1085
||||.||||
Sbjct 1555 GAGGTTCCCTATCTTGATGTAATTCCAAACAACGAAGATACCGACTCAGACGCTGATGTAATCCCAGGTCCCTC 1628
Query 1086 TGAGGAGCCAGCTGTGCCTTCCGGCACTGCCCGTTCCCATGACGATGAGGAAGG---AGCGGGTAACCCTCCCA 1156
|||||||||.|||||||||.||.|||||||..||||||.||||.|.|||||||| |||.||||||||.||||
Sbjct 1629 TGAGGAGCCTGCTGTGCCTGCCAGCACTGCTGGTTCCCCTGACAAAGAGGAAGGAGCAGCCGGTAACCCCCCCA 1702
Query 1157 TTCCGGA-GCAAGACCGCCCATTGCTCCGTGTGCCCCGGGAGAAGGAGGCCAAAACTGGCGTCAGCTACTTCTT 1229
| || ||||||||||.|||.|||||||||||.||.||||.|||.||||..| |.||.|..||||||
Sbjct 1703 ------ACGC-AGACCGCCCACTGCCCCGTGTGCCCCAGGGGAAGAAGGGCAAATTT---GCCACCCGCTTCTT 1766
Query 1230 TCCT 1233
||||
Sbjct 1767 TCCT 1770
