Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13335
- Subject:
- NM_177091.5
- Aligned Length:
- 2212
- Identities:
- 1271
- Gaps:
- 713
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCTGGAAGACCTGAGAAGTGTTTTTCTTTGATTAGATTCACTCTCCTCTGTCTGAAAATGGTTATTTCATC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAAAACAGCTCCTGAAATACCAACTATTGATCAGGCCTATTCAAAAATCAGCAATAGTATCACCGTAGAATGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTACCGTGCCAGGGGCCACAAGTTACTTGCTCACAGCTGAAGATGGGAACACAATCATTGAGACCACAGTGGCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATTCCCCAGGGACGGTGACAGGCCTGAAGGCTGCAACCTTGTACCAAATCACCATCAGATCCATCAGCGCCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGACAAAGCCAGGCATCATCTCCAAAGCAGGCAAAGACAGTGTTGGCTGCCCCAGTTCTGGAGGTTAGCTCTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAAGTCCAGACTCAATCCTTGTGAGCTGGGACGCCGTATACATGGCGATCGGATTCTCCGTGTCTGTTATGCGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCAACGGCTTGGGTAGAATTTGGAAAGAGAATACTACAAACACCTCCCTGACCTTCAGCAGTCTGGATGCCGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AACTCTCTACACTATAAAGGCCTACGCGTGGAATGCCAATGGAATCCCCGGGGATGACTCCACCCGCAATCAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAACCAGTCCTCGTGCCCCTGCCAACATTCAAGTCTTCTTTGACAGCGGGGCCCTAAAGGCGTCTGTTTCGTGG 666
Query 1 ---------------------------------ATGGCTTTGAGCGACTCTTCAGAGCTGACCTGCAGTACAAC 41
.||||.|.|||.||.|||||..|||..|.||||||.||.||
Sbjct 667 ACCCCGACAGAAGGAGCGTTCAACTACACTGTGGTGGCATCGAGTGATTCTTCCCAGCGCAGCTGCAGCACCAC 740
Query 42 TTTCAGTTCCTGCACCATCTCTTCCCTCCAGTGTGGAACTGAATACTTGATTTCAGTTTTAGCAAGTAATGATG 115
|.||||.|||||.|.|||...||||.|.|||||||||||.||.|||.|||||||.||.|.|||||.|||.||||
Sbjct 741 TCTCAGCTCCTGTAGCATTAGTTCCTTGCAGTGTGGAACAGAGTACCTGATTTCTGTCTCAGCAAATAACGATG 814
Query 116 CTGGATCTAGCAAATCATCTTCAGCAATGACCCTGAAAACTGTTGCTTGTGCACCCGGAAGAGTGACGATCCAA 189
||||.||.|||||.||.|..||.|||...||||||||.|||||||||||||||||.|||||.||||.||||||.
Sbjct 815 CTGGGTCCAGCAAGTCCTGCTCTGCACCAACCCTGAAGACTGTTGCTTGTGCACCTGGAAGGGTGATGATCCAG 888
Query 190 GAAGATCCCCCTGGCCACCTGTCTGTGGCTTGGTCCAGTGTAGATCTGGGTGACTACTATGTGGTCTTT-GTGA 262
|||||.||||||||.|||.||||||||||||||||||.|||.||.|||||||||||.||||||| |||| ||||
Sbjct 889 GAAGAGCCCCCTGGTCACTTGTCTGTGGCTTGGTCCAATGTGGAGCTGGGTGACTATTATGTGG-CTTTCGTGA 961
Query 263 AGAGTGATGATGGCTTGGAAGTACACTGCAACACATCTCTCACTCAGTGCAACTTCTTATCTGAGTGTGGCTTC 336
||||||||||.||||||||.|||||||||||.||.||.|||||.||||||||||||||.|||||||||||||||
Sbjct 962 AGAGTGATGACGGCTTGGAGGTACACTGCAATACCTCCCTCACCCAGTGCAACTTCTTGTCTGAGTGTGGCTTC 1035
Query 337 ACTTATTTTATTAGTGTTTTTGTCTATAACAAGGCAGGGCAAAGTCCTTTGGGTGACATATTCAATTATACCAC 410
||.||.||.||||||||.||||.||||||||||||||||||.||||||.||||.||..||||||||||.||.||
Sbjct 1036 ACGTACTTCATTAGTGTGTTTGCCTATAACAAGGCAGGGCAGAGTCCTCTGGGCGATGTATTCAATTACACTAC 1109
Query 411 AGCTCCCTGTTGTCCTAGTGACATTAACCCCGTGTTGGTGTCCAGTGACAGAGTTGAGATTGTCTGGTCTCCTG 484
||||||.||||||||||.||||||||.|||.||||||||||||||||||||.||.||.||||.|||||||||||
Sbjct 1110 AGCTCCGTGTTGTCCTAATGACATTAGCCCAGTGTTGGTGTCCAGTGACAGGGTGGAAATTGCCTGGTCTCCTG 1183
Query 485 TCCGTGGTGCCGAACTGTATGAAACCAAGGCTGTAGATGGGTACAACATGGTTGAGTGCAATGACACTACTCCT 558
|.||||||||.|||||.||||||||||||||..|||.||||||.|.|||.||.||||||||.|||||..|||||
Sbjct 1184 TGCGTGGTGCTGAACTCTATGAAACCAAGGCCATAGCTGGGTATAGCATTGTGGAGTGCAACGACACCGCTCCT 1257
Query 559 GCGTGCACCCTTTCGGCTCTAGAGTGTGACACCAAGTACAACATCACAGTGTATTCATTCAATGAAGTCCGAGG 632
||.|||||.||.||.||..|.||.||||||||||||||||||.|||||||||||||.||||.|||.||||||||
Sbjct 1258 GCTTGCACTCTCTCTGCCTTGGATTGTGACACCAAGTACAACGTCACAGTGTATTCCTTCAGTGAGGTCCGAGG 1331
Query 633 CAGCAATATGTCATGTACTCCCCAGTTCATAACCACAGCTCCTTGCAGTCCTGAAATAAAAAATGTTTCAAGGG 706
|||||||.|||||||..||.||||.||.||.|||||||||||||||||||||||||||||||||.||||.|.||
Sbjct 1332 CAGCAATCTGTCATGCTCTTCCCACTTTATCACCACAGCTCCTTGCAGTCCTGAAATAAAAAATATTTCGAAGG 1405
Query 707 ATGCATTCTCCATGATTAATGTGCACTGGCGATCCACTAATGATGATGCTACTTACACGGTGACTGCCCAAGGG 780
||||||||||||||||.||||||||||||||.||.||||||||.|..||.||||||||||||||.|||||.||.
Sbjct 1406 ATGCATTCTCCATGATCAATGTGCACTGGCGGTCGACTAATGAAGGCGCCACTTACACGGTGACGGCCCAGGGC 1479
Query 781 GAGAAAGGACTGTATCAGTGCAGCAGCACAGGAGAGTCCTGCACCATGCGGGGCTTGCCCTGTGGCTCAGTGTT 854
.||||.||.||||..||||||||||||||.||.|||.||||||..|||.|||||.|||||||.|||||..||||
Sbjct 1480 AAGAAGGGGCTGTTCCAGTGCAGCAGCACCGGGGAGACCTGCAGGATGGGGGGCCTGCCCTGCGGCTCCATGTT 1553
Query 855 CTCTGTCACTGCTGTGGCCGAAACACAGGCAGGACGGAGCCTGCCCAGCTACAGTGTGCCCCTGGAAACAGTGC 928
|||||||||||||||||||||.||.|||||.|||..||||||||||||||||||.|||||||||||||||||||
Sbjct 1554 CTCTGTCACTGCTGTGGCCGAGACTCAGGCGGGAAAGAGCCTGCCCAGCTACAGCGTGCCCCTGGAAACAGTGC 1627
Query 929 CATGCTGTCCAACCGGTCTGACAGTAACTCAAATCACCCAGTCAGTAATCAACGTGAGCTGGACTATTGGGAGA 1002
|.|||||||||.|.||||||||||.|.||||..||||||||||..||||||||||||||||||||..||||..|
Sbjct 1628 CCTGCTGTCCAGCTGGTCTGACAGCAGCTCAGGTCACCCAGTCTATAATCAACGTGAGCTGGACTGCTGGGGCA 1701
Query 1003 GTGGCTCAAACCCATGTTGCAGTTCTGGAGTCACACACTGGACAGTCTAAGTGTCACACTCATCAAAACCACTG 1076
||||||||||||.|||.||||||.|||||||||.|||..||||||||||||||||||||.||||||||||||||
Sbjct 1702 GTGGCTCAAACCTATGCTGCAGTGCTGGAGTCATACATCGGACAGTCTAAGTGTCACACCCATCAAAACCACTG 1775
Query 1077 CCTCCTAGGGTGCATCACATGTGGCATCAATTACACAGTGACATTAAAAGCAATTAGTGCCACCGGGTTGACTG 1150
|||.||.||.||||||||||||||||||||.|||||.|||.|.||||||||.||||||.||||.||..||||||
Sbjct 1776 CCTTCTGGGATGCATCACATGTGGCATCAACTACACGGTGGCGTTAAAAGCCATTAGTTCCACGGGACTGACTG 1849
Query 1151 CAGATTGCTCCTACCAAAGTTATTTCTCTGGTGCCTGCTGCCCTTTGGGGGTGAAATTATATAGGCTGGGCCCT 1224
|||||||..||||.||||||||.|..|||.|||.|||.|||||..|||||||.|||||||||||||||||||||
Sbjct 1850 CAGATTGTGCCTATCAAAGTTACTCTTCTAGTGTCTGTTGCCCACTGGGGGTCAAATTATATAGGCTGGGCCCT 1923
Query 1225 AATGGCATCCGGATCTACTGGCAAGCCTCCAGGGGCTCTGCCAATTACAGCACTGACCTCTATGGCTCCAAAGG 1298
||||||||||||||||||||||.|||||||||||||.||||||||||.|||||.|||||||||||.||||||||
Sbjct 1924 AATGGCATCCGGATCTACTGGCGAGCCTCCAGGGGCGCTGCCAATTATAGCACCGACCTCTATGGTTCCAAAGG 1997
Query 1299 CATTTTCACGTGCACCCCGAGTGCTGGCCTCAGTTTCTGTGATGTCACTGAGATACCCTGTGGGGATGTATACA 1372
|||.||.||.||..||||...|||.||.||.|||||||||||..||||..|.||.|||||||||||.||.||||
Sbjct 1998 CATCTTTACATGTGCCCCACATGCCGGTCTAAGTTTCTGTGACATCACCAACATCCCCTGTGGGGACGTTTACA 2071
Query 1373 CTGTGATGGTCTCACCAGTTGCTAAAACAGGATTGAAGCTTACTTTCTGTCCAAAAAAAATATATTCAGTAACT 1446
|.|||||||||||||||||||||.||||||||.||||||||||||||||.||||||||||||||.|||||.||.
Sbjct 2072 CCGTGATGGTCTCACCAGTTGCTGAAACAGGACTGAAGCTTACTTTCTGCCCAAAAAAAATATACTCAGTTACC 2145
Query 1447 TGCTCTGGAAGTACACTTGGAATGGTGATTTATAGAGGGAAGAGAAATGAAGAA------------ 1500
||.|||||.|||||.|||||||||||||||||.|||||||||||.||.||...|
Sbjct 2146 TGTTCTGGCAGTACTCTTGGAATGGTGATTTACAGAGGGAAGAGGAACGATACAGCGAGCCCCAGG 2211
