Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13424
- Subject:
- XR_001743234.2
- Aligned Length:
- 2448
- Identities:
- 452
- Gaps:
- 1930
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTATCCAGCCTCCCTCGGCCAAATTGCTGCGGAGCCCGTCGTCAGGGGGCGCCAAGGAGCCAGGGGGAAAACCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGAGGCGCTGACAGGAGCCTCCCGGCGGTGCTACCCTCCACCTCCCACCTCCCTGCGCCCCGCCCCGAGGTTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCTTTGAAGAATGCAGCCGGGGAAAGCATTAACTTTTGAGCTACGTCCAGAATAGCATCATCTTCATGGGTAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCCCTACTCCTAGGATTTCAGAAAACCTTTGATAACTAATTGAGAAAATGCAGAAGATCGTGCAGACAGATGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATTACCAATACACAAGCTTTTAGAAAAGGAAAGAGGAAAAGAACAGAGACAATGGACTCAGAAAATGCAAATAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGACATGGATAAAGGACAGAGAGACCCATATTCGGGAAATGCCTTTCTGCCTGGTGAAAGCTCCAGTGAGGATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAGAGCCTTTAGCAGAATTGTCAAAGGAAGAATTGTGCGCCAAAATAAAAAGCCTGAAAGAAAAACTAACAAAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACCCGGAAAGAAAACAGCCGACTTCGACAGTCTTTGGTCATGCTTCAAGGAAACAAACTAGATATAACAACAGA 592
Query 1 -----------------------------------ATGTTGTTACCACAAGCAGTCACCCAGTTTGAAGAATTG 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAAGACCATTTTACATGGAGGCATGAAAACTTTGAATGTTGTTACCACAAGCAGTCACCCAGTTTGAAGAATTG 666
Query 40 GTTGGTATGGCCGAGGCTCTGCTTAAGGGTGGGGGAACCATGTCTACATCTGCATCCACCCTCTGGAGAGCAAC 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTGGTATGGCCGAGGCTCTGCTTAAGGGTGGGGGAACCATGTCTACATCTGCATCCACCCTCTGGAGAGCAAC 740
Query 114 AAACAACTCCTCGCCAGATTCATTTGCCTCAACATGCAGTAATTCTAATTCTAACTCCAGTTCACCAGTTTCCT 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAACAACTCCTCGCCAGATTCATTTGCCTCAACATGCAGTAATTCTAATTCTAACTCCAGTTCACCAGTTTCCT 814
Query 188 TAAAGCCTGAGGAAGAGCATCAGACTGATGAGAAACAG---TTCCAGAT---TGAAAAATGGCAGATTGCCCGT 255
|||||||||||||||||||||||||||||||||||||| ||.|||.| |||||.|..|||..|| |..|
Sbjct 815 TAAAGCCTGAGGAAGAGCATCAGACTGATGAGAAACAGGTATTACAGGTATCTGAAACAAAGCACCTT--CAAT 886
Query 256 TGTAACAAGAGCAAGC-CTCAGAAGTTTATT----AAT-----GATTTAATGCAAGTACTTTACACAAATGA-A 318
|.||| |.|.||| || |.|.|||.|| ||| |..||..||..||| .|.||| || |
Sbjct 887 TCTAA----ATCTAGCACT--GGATTTTGTTGGAGAATCTGCAGCCTTCCTGGCAGT------GAGAAA-GACA 947
Query 319 TACATGGCCACTCACAGCCT----GACAGGGGCAAAAT------CCTCTACTTCAAGGGACAAA-------GCT 375
.|||||..||.|.||||.|| ||||...|.||.|| .||||.|| |||||||.|| |||
Sbjct 948 GACATGTGCAGTGACAGGCTGTAAGACATATGTAACATTGCTGAGCTCTCCT--AAGGGACCAACAAGCTTGCT 1019
Query 376 G------------------------------------------TAAAACCAG---------------------- 385
| |.|||||||
Sbjct 1020 GAAGAAGCTGCATGTAGATTCCACCCTCAGTACTAGTGATGCATCAAACCAGAGAATTTCTGCCAGTCAAATAA 1093
Query 386 -------CTATG-----------AATCAGAAT------------------------------------------ 399
.|||| |||.||.||
Sbjct 1094 GCATGCAATATGGTTTCTTTGGAAATAAGCATTTCCCAATCCCCAAATACCCCTCTGTACAGTTAATCTAACAG 1167
Query 400 GA-AGTCCAAGA-----AATCATAGGAG---------------------------------TAACAAAACA--- 431
|| |||| ||| .|||||||.|| ||||.||.||
Sbjct 1168 GATAGTC--AGAGCTCTTATCATAGCAGCCAAAACTTCAGCCCATAGGTTAGTCATTGTCCTAACCAATCATTG 1239
Query 432 -------ATTAT----------TTCCCAATACGGAT----GATGTTTCAATTAGGAGAATGATAGG---GCAAA 481
||||| ||||||.||..|.| |||.| ||||.|.||..|.|.| |||||
Sbjct 1240 TACATTGATTATTACCAGTGACTTCCCATTATAGTTTTTGGATCT-----TTAGCATAAGCACATGCTTGCAAA 1308
Query 482 AGCTAAACA-----------ACTGT-----------------ACCAAG-AAGCC--AAATTT------------ 512
|| |||||| |.||| ||.||| .|||| ||||.|
Sbjct 1309 AG-TAAACAGTGAAATAATTAATGTTGGCAAATATGAGAACAACAAAGTCAGCCCAAAATCTGATAATCATGTC 1381
Query 513 -----AAGCAAAAATCTT---------AACTCTCAGGA-TAT---------TAAA------------------- 543
|||.||.|||.|| ||.|..||||| ||| ||||
Sbjct 1382 TAACCAAGTAATAATGTTTTAGCAATAAAATTACAGGATTATTCTGTTATCTAAAAATGTATAAAATGGGAATA 1455
Query 544 -------------------------------------------------------------------------- 543
Sbjct 1456 TGAAAAAAATGACAACAGCAAGATGTTTTATTTTAATGTTAAGCAATTCCACCACACTTCTGAAGAATAAACCT 1529
Query 544 -------------------------------------------------------------------------- 543
Sbjct 1530 AAGTTTTTGTGATTGTTAAAACAATGCATCAATTTTCAGGGAAATCTTTTTGTTTGTTTATTTACCAGACATGT 1603
Query 544 -------------------------------------------------------------------------- 543
Sbjct 1604 TCTAACTTTGTATTGCCCAAAGTATATTAAATACAGATGTGTAATATAAAGCATCAATATCACCTAACACATCG 1677
Query 544 -------------------------------------------------------------------------- 543
Sbjct 1678 TATATAAGATATAACATGATAGATAGTTGGTCGATTACATTGCTATACTGCTTAGTTTTAACTGGTTTATTTTT 1751
Query 544 -------------------------------------------------------------------------- 543
Sbjct 1752 ATTGTAGCAGAAATGAACTGAAAAAAAATATGGGTTTGATAATCACACACATGAAAGTACCATTTTGTAACTCA 1825
Query 544 -------------------------------------------------------------------------- 543
Sbjct 1826 ACAAAAGATAAAACATTCTTCATCAAAAGGCTTCTCGCTTGGTGTCAGGTTGTCACATGTGACCACTGTGCAAT 1899
Query 544 -------------------------------------------------------------------------- 543
Sbjct 1900 GCGAAGCCATACTTCTTCAGTGCACAAAGTCATGTTTAAACTTGGAAAAGAGGATGCTACAGTAGTTTCAAAGT 1973
Query 544 -------------------------------------------------------------------------- 543
Sbjct 1974 TCAGTGTTGTGGACCCAGGAAATTTTCCATAAGTCTTGCTTGATAACAATGTGATTGTACAAAATAAATGTTCT 2047
Query 544 -------------------------------------------------------------------------- 543
Sbjct 2048 TAAGGAAACAACTTATGTAACATTTGCTACCTTTATGTAAACATAAATAAATCCCATTTAAAAGATAAAACTTA 2121
Query 544 -------------------------------------------------------------------------- 543
Sbjct 2122 TTTTCTTGTTTCTTTATTAATGCATAAAAATTAGGGAAATATTTTTTTCTAGGCTGATAGCTTTTTCACTCATC 2195
Query 544 -------------------------------------------------------------------------- 543
Sbjct 2196 CATTAAGGCATTACCATTACGATTTGACTATGTAGCTCTGACTCATTTTTCTTGTAAAGAGCCATGCTATGTAG 2269
Query 544 -------------------------------------------------------------------------- 543
Sbjct 2270 GATATATAGACAACGTCCAGGAAAGTAAATACATTTAATATTTTTATTGAGAAAGGATAATCTTACTAAGATGT 2343
Query 544 -------------------------------------------------------------------------- 543
Sbjct 2344 ATGCTATTTGCTTTATTAAAAATGCTACTTGATAATGTAAGTTTTGCCTACTAAAGGTAAATAAAATTACTTTT 2417
Query 544 ------ 543
Sbjct 2418 GCAAAA 2423
