Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13433
Subject:
NM_172706.3
Aligned Length:
3084
Identities:
2146
Gaps:
675

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTGCTGCTCACCCTGCGGCGGGCGAAAGGCAGGGATCGGGGGCGACCGGCCGGGGGTCCCCGCCGCGCGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCGCTGCCCTGGAGCCCCGCCTGGATTTGCTGCTGGGCGCTCGCAGGCTGCCAGGCAGTTTGGGCTGGAGACT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGTCCTCCTCTGGCCGCCCGCTTCCTGCGTGCCAAGAGAAAGATTACCACTTTGAATATACAGAATGTGATAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTGGCTCCAGGTGGAGGGTCGCCATTCCGAATTCTGCAGTGGATTGCTCTGGCCTGCCTGACCCAGTGAAAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAAAGAATGCACTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAATGTGTGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCCAACGTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGATGGCTGTAACAACTCTTCTTGGCTTCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTGGCTACGTCTTCTTTGAGTACCAGTACGTGGACAACAACATCTTCTTTGAGTTCTTTATTCAGAATGACCAG  666

Query    1  ---------ATGGACACCACCACTGACAAGTGGGTAAAACTTACAGACAATGGAGAATGGGGCTCTCATTCTGT  65
                     |||||..|||||||.|||||||||||.||.||.|||||||||||||||||||||||.||||||||
Sbjct  667  TGCCAGGAGATGGATGCCACCACAGACAAGTGGGTGAAGCTCACAGACAATGGAGAATGGGGCTCCCATTCTGT  740

Query   66  AATGCTGAAATCAGGCACAAACATACTCTACTGGAGAACTACAGGCATCCTTATGGGTTCTAAGGCGGTCAAGC  139
            |||||||||||||||||||||.||.||.|||||||||||.||||||||||||||||||||||||||.|||||||
Sbjct  741  AATGCTGAAATCAGGCACAAATATTCTGTACTGGAGAACGACAGGCATCCTTATGGGTTCTAAGGCAGTCAAGC  814

Query  140  CTGTGCTGGTAAAAAATATCACAATTGAAGGGGTGGCGTACACATCAGAATGTTTTCCTTGCAAGCCAGGCACA  213
            |.|||||.|||||.||||||||.||.|||||||||||.|||||.|||||.||.|||||.||.|||||||||||.
Sbjct  815  CCGTGCTAGTAAAGAATATCACCATCGAAGGGGTGGCATACACCTCAGAGTGCTTTCCATGTAAGCCAGGCACT  888

Query  214  TTCAGCAACAAACCAGGTTCATTCAACTGCCAGGTGTGTCCCAGAAACACCTATTCTGAGAAAGGAGCCAAAGA  287
            |||||||||||||||||.|||||.|||||||||.||||||||||||||||||||||||||||.||.||.|||||
Sbjct  889  TTCAGCAACAAACCAGGCTCATTTAACTGCCAGATGTGTCCCAGAAACACCTATTCTGAGAAGGGTGCTAAAGA  962

Query  288  ATGTATAAGGTGTAAAGACGACTCTCAATTTTCAGAGGAAGGATCCAGTGAGTGTACAGAGCGCCCTCCCTGTA  361
            ||||||.||||||||.||.|||||.||.|||||||||||||||.|||||||||||...||.|||||.|||||.|
Sbjct  963  ATGTATTAGGTGTAAGGAGGACTCCCAGTTTTCAGAGGAAGGAGCCAGTGAGTGTGTGGATCGCCCACCCTGCA  1036

Query  362  CCACAAAAGACTATTTCCAGATCCATACTCCATGTGATGAAGAAGGAAAGACACAGATAATGTACAAGTGGATA  435
            |.||.|||||||||||||||||||||||.||.|||||.||||||||.|||||||||||||||||||||||||||
Sbjct 1037  CTACCAAAGACTATTTCCAGATCCATACCCCCTGTGACGAAGAAGGGAAGACACAGATAATGTACAAGTGGATA  1110

Query  436  GAGCCCAAAATCTGCCGGGAGGATCTCACAGATGCTATTAGATTGCCCCCTTCTGGAGAGAAGAAGGATTGTCC  509
            |||||.|||||||||.|||||||||||||||||||||||||..|||||||||||||||||||||||||||||||
Sbjct 1111  GAGCCAAAAATCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCC  1184

Query  510  GCCTTGCAACCCTGGATTTTATAACAATGGATCATCTTCTTGCCATCCCTGTCCTCCTGGAACATTTTCAGATG  583
            .|||||||||||.|||||.||||||||||||||.|||||||||||||||||.|||||.||.||.||||||||||
Sbjct 1185  TCCTTGCAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATG  1258

Query  584  GAACCAAAGAATGTAGACCATGTCCAGCAGGAACGGAGCCTGCACTTGGCTTTGAATATAAATGGTGGAATGTC  657
            ||||.||.|||||.|...|||||||.||.|||||.|||||.||||||||.||||||||||||||||||||||||
Sbjct 1259  GAACAAAGGAATGCAAGTCATGTCCGGCCGGAACAGAGCCAGCACTTGGGTTTGAATATAAATGGTGGAATGTC  1332

Query  658  CTTCCTGGCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCAAAGTGCGATGGAATGAATGGTTGGGAGGT  731
            ||.||||.||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||||
Sbjct 1333  CTCCCTGCCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCCAAGTGCGATGGAATGAACGGTTGGGAGGT  1406

Query  732  GGCTGGAGATCATATCCAGAGTGGGGCTGGAGGTTCTGACAATGATTACCTGATCTTAAACTTGCATATCCCAG  805
            ||||||||||||.||||.||||||.||||||||.|||||||||||.||.||.||||||||||||||.|||||||
Sbjct 1407  GGCTGGAGATCACATCCGGAGTGGAGCTGGAGGCTCTGACAATGACTATCTCATCTTAAACTTGCACATCCCAG  1480

Query  806  GATTTAAACCACCAACATCTATGACTGGAGCCACGGGTTCTGAACTAGGAAGAATAACATTTGTCTTTGAGACC  879
            ||||||||||||||||.|||||||||||||||||.|||||.|||||.|||||.|||||||||||.||||||||.
Sbjct 1481  GATTTAAACCACCAACGTCTATGACTGGAGCCACAGGTTCGGAACTGGGAAGGATAACATTTGTGTTTGAGACT  1554

Query  880  CTCTGTTCAGCTGACTGTGTTTTGTACTTCATGGTGGATATTAATAGAAAAAGTACAAATGTGGTAGAATCGTG  953
            |||||.|||||||||||||||||||||||||||||||||||.|||||||||||.||.||||||||.|||||.||
Sbjct 1555  CTCTGCTCAGCTGACTGTGTTTTGTACTTCATGGTGGATATAAATAGAAAAAGCACCAATGTGGTGGAATCATG  1628

Query  954  GGGTGGAACCAAAGAAAAACAAGCTTACACCCATATCATCTTCAAGAATGCAACTTTTACATTTACATGGGCAT  1027
            |||.||||||||||||||.||||||||.||.|||.||||.||||||||||||||.|||||||||||||||||.|
Sbjct 1629  GGGAGGAACCAAAGAAAAGCAAGCTTATACGCATGTCATATTCAAGAATGCAACGTTTACATTTACATGGGCGT  1702

Query 1028  TCCAGAGAACTAATCAGGGTCAAGATAATAGACGGTTCATCAATGACATGGTGAAGATTTATTCTATCACAGCC  1101
            |||||||.||.||.||.|||||||||||.|||||.|||||||||||..||||||||||||||||||||||||||
Sbjct 1703  TCCAGAGGACAAACCAAGGTCAAGATAACAGACGATTCATCAATGATGTGGTGAAGATTTATTCTATCACAGCC  1776

Query 1102  ACTAATGCAGTTGATGGGGTGGCGTCCTCATGCCGTGCCTGTGCCCTCGGTTCTGAACAGTCGGGTTCATCGTG  1175
            ||||||||||||||||||||.||..|.|||||.||||||||||||||.||.|||||.|||||||..|||||.||
Sbjct 1777  ACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGCCCTGGGCTCTGAGCAGTCGGCCTCATCATG  1850

Query 1176  TGTCCCCTGCCCTCCAGGCCACTACATTGAGAAAGAAACCAACCAGTGCAAGGAATGTCCACCTGACACCTACC  1249
            |||.||||||||.||||||||||||||||||||.||||||||||||||||||||.||||||.||||||||||||
Sbjct 1851  TGTACCCTGCCCCCCAGGCCACTACATTGAGAAGGAAACCAACCAGTGCAAGGAGTGTCCAGCTGACACCTACC  1924

Query 1250  TGTCCATACATCAGGTCTATGGCAAAGAGGCTTGTATTCCATGCGGGCCTGGGAGTAAAAACAATCAGGACCAT  1323
            |||||||.||.||||||||||||||.||.|||||.|||||.||.||||||||.|||||||.||..||||||||.
Sbjct 1925  TGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCATTCCGTGTGGGCCTGGAAGTAAAAGCACCCAGGACCAC  1998

Query 1324  TCGGTTTGCTATAGTGACTGCTTTTTCTACCATGAAAAAGAAAATCAGAGTTTGCACTATGACTTTAGCAACCT  1397
            |||.||||||||||.|||||||||||||||||||||||||||||.||||.|.|||||||||||||..|||||||
Sbjct 1999  TCGCTTTGCTATAGCGACTGCTTTTTCTACCATGAAAAAGAAAACCAGACTCTGCACTATGACTTCCGCAACCT  2072

Query 1398  CAGCAGTGTGGGCTCATTAATGAATGGCCCCAGCTTCACCTCCAAAGGAACAAAATACTTCCATTTCTTCAATA  1471
            |||||||||.|||||..|.||||||||||||||||||||||||||.|||||.||||||||||||||||||||||
Sbjct 2073  CAGCAGTGTAGGCTCGCTGATGAATGGCCCCAGCTTCACCTCCAAGGGAACGAAATACTTCCATTTCTTCAATA  2146

Query 1472  TCAGTTTATGTGGGCATGAGGGGAAGAAGATGGCTCTCTGTACCAACAATATAACAGACTTTACAGTAAAAGAA  1545
            |||||||||||||.||||||||||..||||||||||||||||||||||||||..||||||||||.|||||.|||
Sbjct 2147  TCAGTTTATGTGGACATGAGGGGAGAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAA  2220

Query 1546  ATAGTGGCAGGGTCAGATGATTACACAAATTTGGTAGGGGCATTTGTATGCCAGTCAACAATTATTCCTTCTGA  1619
            ||.|||.||||||||||||||||||||||||||||.||.||||||||||||||||||||.||||||||||||||
Sbjct 2221  ATGGTGACAGGGTCAGATGATTACACAAATTTGGTTGGAGCATTTGTATGCCAGTCAACTATTATTCCTTCTGA  2294

Query 1620  AAGTAAGGGTTTCCGAGCAGCCTTATCATCACAATCCATCATTCTGGCAGATACATTCATAGGAGTCACAGTTG  1693
            |||||||||.|||||.||||||.|.||.|||||.||.||||||||||||||||..||..||||.|||||.||||
Sbjct 2295  AAGTAAGGGCTTCCGGGCAGCCCTGTCGTCACAGTCTATCATTCTGGCAGATATGTTTTTAGGTGTCACTGTTG  2368

Query 1694  AAACCACATTGAAAAATATTAATATAAAAGAAGATATGTTCCCAGTTCCAACAAGCCAAATACCAGATGTGCAT  1767
            |.||..|.|||.||||..|||||||.||.||.||||||||||||||..||.|.||||||.||||||||||.|||
Sbjct 2369  ACACTGCCTTGCAAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCGAGCCAAGTACCAGATGTTCAT  2442

Query 1768  TTCTTTTATAAGTCTTCTACAGCAACAACATCTTGTATTAATGGCCGATCAACTGCTGTGAAAATGAGGTGTAA  1841
            |||||||||||||||||.|||||.||.|||||||||||||||||.|||||.|||||||||||.|||||||||||
Sbjct 2443  TTCTTTTATAAGTCTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAA  2516

Query 1842  TCCTACTAAATCTGGAGCAGGAGTGATTTCAGTCCCCAGCAAGTGCCCAGCAGGTACCTGTGATGGGTGTACGT  1915
            |||.|..|.|.||||.|||||.|||||.|||||||||||||||||.|||||.||.|||||||||||.|||||.|
Sbjct 2517  TCCCATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAGCAAGTGTCCAGCTGGCACCTGTGATGGTTGTACCT  2590

Query 1916  TCTATTTCCTGTGGGAGAGTGCTGAAGCTTGCCCTCTGTGTACGGAGCATGACTTCCATGAGATTGAGGGAGCC  1989
            ||||.||.||.|||||||||||.|||||||||||||||||.||.||.|||||||||||||||||.|||||||||
Sbjct 2591  TCTACTTTCTATGGGAGAGTGCAGAAGCTTGCCCTCTGTGCACAGAACATGACTTCCATGAGATCGAGGGAGCC  2664

Query 1990  TGCAAGAGAGGATTTCAGGAAACCTTGTATGTGTGGAATGAACCTAAATGGTGCATTAAAGGAATTTCTTTGCC  2063
            |||||||||||..|||||||||..||.|||||.||||||||||||||.||||||||||||||||||||||||||
Sbjct 2665  TGCAAGAGAGGGCTTCAGGAAATATTATATGTATGGAATGAACCTAAGTGGTGCATTAAAGGAATTTCTTTGCC  2738

Query 2064  TGAGAAAAAGTTGGCAACCTGTGAAACGGTTGACTTTTGGCTGAAGGTGGGAGCCGGTGTGGGAGCTTTTACTG  2137
            .||.||.||||||.|||||||.|||||.|||||||||||||||||.||||||||.||||||||.||.||.||.|
Sbjct 2739  CGAAAAGAAGTTGTCAACCTGCGAAACTGTTGACTTTTGGCTGAAAGTGGGAGCTGGTGTGGGCGCGTTCACAG  2812

Query 2138  CCGTTTTGCTGGTGGCTCTGACCTGCTACTTCTGGAAAAAGAATCAAAAACTGGAATACAAATATTCCAAGTTA  2211
            ||||||||.||||||||.|.||.||||||||.|||||||||||||||||.|||||||||||||||||.||.|||
Sbjct 2813  CCGTTTTGTTGGTGGCTTTAACATGCTACTTTTGGAAAAAGAATCAAAAGCTGGAATACAAATATTCTAAATTA  2886

Query 2212  GTAATGACGACTAACTCAAAAGAGTGTGAACTCCCGGCTGCAGACAGTTGTGCTATCATGGAAGGAGAAGATAA  2285
            |||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||||||||
Sbjct 2887  GTAATGACGACTAACTCAAAAGAGTGTGAACTCCCAGCTGCAGACAGCTGTGCTATCATGGAAGGAGAAGATAA  2960

Query 2286  TGAAGAGGAAGTTGTATATTCCAATAAACAGTCACTACTAGGAAAACTCAAATCTTTGGCAACCAAGGAAAAAG  2359
            |||||||||.||||||||||||||.|||||||||||||||||||||||.||.||||||||.||.||||||||||
Sbjct 2961  TGAAGAGGATGTTGTATATTCCAACAAACAGTCACTACTAGGAAAACTTAAGTCTTTGGCCACAAAGGAAAAAG  3034

Query 2360  AAGACCATTTTGAATCTGTTCAACTGAAAACCTCAAGATCCCCAAATATA  2409
            |.|||||.|||||.||||||||.||||||.|||||||||.|||.||||||
Sbjct 3035  ATGACCACTTTGAGTCTGTTCAGCTGAAATCCTCAAGATGCCCCAATATA  3084

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