Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13499
Subject:
XM_006530394.3
Aligned Length:
2504
Identities:
1745
Gaps:
559

Alignment

Query    1  ATGACGGATGAACAGGTGTGCGAGACTGTGGAGAAATACGGAGCCAACCGGGAGGAGTGTGCCCGCCTCAACGC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTCCCTCTCCTGCCTCAGGAATGTCCACATGTCAGGAGGCAACCTTTCCAAACAAGACTGGACCATCCAGTGGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CCACCACAGAGACGGGGAAGGAGAACAATCCCGTGTGCCCCCCGGAGCCCACCCCGTGGATCCGCACCCATCTC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCCCAGAGCCCCAGGGTCCCGTCCAAGTGCGTCCAGCACTATTGTCACACCAGCCCCACTCCCGGGGCCCCTGT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GTACACCCACGTGGACAGGCTTACCGTGGACGCCTACCCGGGCTTGTGCCCGCCCCCGCCACTGGAGTCGGGCC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ACCGTTCCCTGCCCCCATCGCCCCGGCAGCGGCACGCGGTCCGCACCCCGCCGCGCACCCCCAACATCGTCACC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  ACCGTGACCCCGCCGGGCACGCCGCCCATGAGGAAGAAGAACAAGCTGAAGCCCCCGGGGA-------CCCCAC  511
                                       |||             |.|||.|  |||.|.|||       ||.|| 
Sbjct    1  ---------------------------ATG-------------ATCTGCA--CCCTGTGGAGGTTGGTCCTCA-  31

Query  512  CGCCCTCCTCCCGAAAACTGATACACTTGATCCCGGGATTCACCGCGCTGCATCGGAGCAAATCCCACGAGT-T  584
             |||||..||||  ||.|                             ||.|.||.||           |||| |
Sbjct   32  -GCCCTAGTCCC--AAGC-----------------------------CTCCTTCAGA-----------GAGTCT  62

Query  585  CCAGCTGGGGCACCGC-GTGGACGAG-GCCCACACGCCCAA-------AGCCAAGAAGAAGAGCAAACCCTTGA  649
            .||.|.||..||||.| |.|| |||| |           ||       ||||||||||||||||||||||||||
Sbjct   63  ACACCAGGCCCACCACAGAGG-CGAGAG-----------AATTTTTGGAGCCAAGAAGAAGAGCAAACCCTTGA  124

Query  650  ACCTCAAGATCCACAGCAGCGTAGGCAGCTGCGAGAACATCCCCTCTCAGCAGCGCTCCCCGCTGCTGTCCGAG  723
            |||||||||||||||||.||||.|||||||||||||||||||||.|.|||||.|||||.|||||.|||||||||
Sbjct  125  ACCTCAAGATCCACAGCGGCGTGGGCAGCTGCGAGAACATCCCCGCCCAGCAACGCTCTCCGCTCCTGTCCGAG  198

Query  724  CGCTCCCTCCGCTCCTTCTTTGTGGGACACGCACCTTTCCTGCCTTCCACCCCTCCTGTTCACACTGAGGCCAA  797
            ||||||.|.||.||||||||||||||.||||..||.||||||||.||||||||.|||||.||||||||.|||||
Sbjct  199  CGCTCCTTGCGGTCCTTCTTTGTGGGCCACGGGCCCTTCCTGCCCTCCACCCCACCTGTCCACACTGAAGCCAA  272

Query  798  CTTCTCTGCAAACACACTGTCAGTGCCACGCTGGTCCCCGCAGATCCCTCGCAGAGATCTTGGCAACTCCATCA  871
            .|||||||||||||||||.||.||.||.||||||||.||.||||||||.||||||||.||||||||.|||||||
Sbjct  273  TTTCTCTGCAAACACACTCTCTGTACCTCGCTGGTCACCACAGATCCCACGCAGAGACCTTGGCAATTCCATCA  346

Query  872  AGCACAGGTTTTCCACCAAGTACTGGATGTCTCAGACGTGCACAGTCTGTGGGAAAGGGATGCTTTTTGGCCTC  945
            |||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||
Sbjct  347  AGCACAGGTTTTCCACCAAGTACTGGATGTCTCAGACGTGCACGGTCTGCGGGAAAGGGATGCTTTTTGGCCTC  420

Query  946  AAGTGTAAAAACTGCAAGTTAAAGTGCCACAACAAATGCACCAAAGAAGCCCCACCCTGTCATCTTCTGATCAT  1019
            ||||||||||||||||||||||||||||||||.||||||||||||||||||||.||||||||.||.|||||.||
Sbjct  421  AAGTGTAAAAACTGCAAGTTAAAGTGCCACAATAAATGCACCAAAGAAGCCCCGCCCTGTCACCTCCTGATTAT  494

Query 1020  CCACCGAGGAGATCCAGCAAGGTTAGTCCGGACAGAGTCCGTTCCGTGTGACATCAACAACCCTCTACGGAAGC  1093
            ||||||||||||.||||||||||||||.||.||.|||||.||.||.|||||||||||||||||..|.|||||||
Sbjct  495  CCACCGAGGAGACCCAGCAAGGTTAGTGCGAACGGAGTCGGTGCCCTGTGACATCAACAACCCGGTCCGGAAGC  568

Query 1094  CACCTCGCTATTCAGACCTGCACATCAGTCAGACGCTCCCCAAAACCAACAAAATCAACAAGGACCACATCCCT  1167
            |..|.||.||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct  569  CTGCCCGATATTCAGATCTCCACATCAGTCAGACTCTCCCCAAAACCAACAAAATCAACAAGGACCACATCCCT  642

Query 1168  GTCCCTTACCAGCCAGACTCCAGCAGCAACCCCTCCTCCACGACGTCCTCCACGCCCTCCTCGCCAGCACCCCC  1241
            |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||.||.||||||||
Sbjct  643  GTCCCTTACCAGCCAGACTCCAGCAGCAATCCCTCCTCCACGACGTCCTCCACGCCCTCCTCACCGGCACCCCC  716

Query 1242  CCTCCCTCCTAGTGCCACGCCGCCTTCTCCCCTACACCCTTCCCCACAGTGCACACGGCAGCAGAAGAACTTCA  1315
            |||||||||.||.||||||||||||||||||||.|||||.|||||.||||||.|..|.|||.|.||||||||||
Sbjct  717  CCTCCCTCCCAGCGCCACGCCGCCTTCTCCCCTGCACCCCTCCCCGCAGTGCCCGAGACAGAAAAAGAACTTCA  790

Query 1316  ACCTGCCAGCATCCCACTACTACAAATACAAGCAGCAGTTCATCTTCCCAGATGTGGTGCCGGTGCCGGAGACG  1389
            ||||||||||.|||||||||||||||||||||||.||||||||||||||||||||||||||.||.||.|||||.
Sbjct  791  ACCTGCCAGCTTCCCACTACTACAAATACAAGCAACAGTTCATCTTCCCAGATGTGGTGCCTGTACCAGAGACA  864

Query 1390  CCGACCCGGGCGCCCCAGGTCATCCTGCATCCGGTGACCTCGAATCCAATCTTGGAAGGAAATCCATTACTTCA  1463
            ||.||||||||.|||||.||||||||||||||.||.|||||.|||.||||||||||||||||.|||||||||||
Sbjct  865  CCCACCCGGGCACCCCAAGTCATCCTGCATCCTGTCACCTCAAATACAATCTTGGAAGGAAACCCATTACTTCA  938

Query 1464  AATTGAAGTGGAGCCAACGTCGGAGAATGAAGAGGTCCATGATGAGGCCGAAGAGTCAGAGGATGACTTCGAGG  1537
            ||||||||||||.|||||.||.|||||.||||||..|||..||||.||.||.|||||.|||||.||.||.||.|
Sbjct  939  AATTGAAGTGGAACCAACCTCCGAGAACGAAGAGAGCCACAATGAAGCAGAGGAGTCCGAGGACGAGTTTGAAG  1012

Query 1538  AGATGAACCTGTCCCTCCTCTCGGCCCGGAGCTTCCCACGCAAGGCCAGCCAGACCAGCATCTTCCTTCAGGAG  1611
            ||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1013  AGATGAACCTATCCCTCCTCTCAGCCCGGAGCTTCCCACGCAAAGCCAGCCAGACCAGCATCTTCCTTCAGGAG  1086

Query 1612  TGGGACATCCCCTTTGAGCAGCTGGAGATCGGCGAGCTCATTGGAAAGGGCCGCTTTGGGCAAGTGTACCACGG  1685
            |||||||||||.|||||.|||||.|||||.|||||||||||.||.|||||.|||||.|||||.||.||||||||
Sbjct 1087  TGGGACATCCCGTTTGAACAGCTAGAGATTGGCGAGCTCATCGGGAAGGGTCGCTTCGGGCAGGTTTACCACGG  1160

Query 1686  CCGCTGGCATGGCGAGGTGGCCATCCGGCTGATTGACATTGAGAGGGACAACGAGGACCAGCTCAAGGCCTTCA  1759
            .||||||||.||||||||||||||||||.||||||||||.|||||||||||.|||||||||||.||||||||||
Sbjct 1161  ACGCTGGCACGGCGAGGTGGCCATCCGGTTGATTGACATAGAGAGGGACAATGAGGACCAGCTTAAGGCCTTCA  1234

Query 1760  AGCGGGAGGTGATGGCCTACAGGCAGACACGGCATGAGAACGTGGTGCTTTTCATGGGTGCCTGCATGAGCCCG  1833
            |||||||.||||||||||||||||||||..||||.||||||||||||||.||||||||.||||||||||||||.
Sbjct 1235  AGCGGGAAGTGATGGCCTACAGGCAGACGAGGCACGAGAACGTGGTGCTCTTCATGGGAGCCTGCATGAGCCCA  1308

Query 1834  CCTCACCTGGCCATCATCACCAGCCTCTGTAAGGGACGGACGCTCTATTCCGTTGTGAGGGATGCCAAAATCGT  1907
            ||.|||.||||||||||||||||||||||||||||||||||.|||||.||.||.||||||||.|||||.||.||
Sbjct 1309  CCCCACTTGGCCATCATCACCAGCCTCTGTAAGGGACGGACACTCTACTCTGTGGTGAGGGACGCCAAGATTGT  1382

Query 1908  TTTGGATGTCAACAAAACCAGGCAGATTGCTCAAGAAATTGTGAAGGGCATGGGCTACCTCCACGCCAAGGGAA  1981
            .||||||||||||||||||||||||||.||.|||||.|||||.|||||||||||||||||||||||||||||.|
Sbjct 1383  CTTGGATGTCAACAAAACCAGGCAGATCGCGCAAGAGATTGTAAAGGGCATGGGCTACCTCCACGCCAAGGGGA  1456

Query 1982  TCCTACACAAGGACCTCAAGTCAAAGAACGTCTTCTATGACAACGGCAAAGTGGTCATCACGGACTTTGGACTC  2055
            ||||.||.|||||||||||.||.||||||||||||||||||||||||||||||||||||||.||||||||.|||
Sbjct 1457  TCCTTCATAAGGACCTCAAATCGAAGAACGTCTTCTATGACAACGGCAAAGTGGTCATCACAGACTTTGGGCTC  1530

Query 2056  TTCAGCATTTCTGGGGTGCTGCAGGCTGGCAGGCGGGAGGACAAACTGCGCATCCAGAATGGCTGGCTATGCCA  2129
            |||||||||||.||||||||||||||||||.|||||||.|||||||||||.||||||||.||||||||.||.||
Sbjct 1531  TTCAGCATTTCCGGGGTGCTGCAGGCTGGCCGGCGGGACGACAAACTGCGGATCCAGAACGGCTGGCTGTGTCA  1604

Query 2130  CCTGGCACCAGAGATCATCCGCCAGCTGTCCCCCGACACAGAGGAGGATAAGCTCCCCTTCTCCAAGCACTCTG  2203
            ||||||.|||||.||||||||||||||||||||.||||||||.|||||.||||||||.||||||||||||||.|
Sbjct 1605  CCTGGCCCCAGAAATCATCCGCCAGCTGTCCCCTGACACAGAAGAGGACAAGCTCCCATTCTCCAAGCACTCGG  1678

Query 2204  ACGTCTTTGCCCTTGGCACAATCTGGTATGAACTCCACGCCAGGGAATGGCCTTTCAAGACCCAACCAGCAGAG  2277
            |.||||||||.||||||||.|||||||||||.||||||||||||||.|||||.|||||||||||||||||||||
Sbjct 1679  ATGTCTTTGCGCTTGGCACCATCTGGTATGAGCTCCACGCCAGGGAGTGGCCATTCAAGACCCAACCAGCAGAG  1752

Query 2278  GCAATAATCTGGCAAATGGGCACAGGCATGAAACCCAACCTCAGCCAGATTGGCATGGGAAAAGAAATCTCGGA  2351
            |||||.||.|||||.||||||||.||.|||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1753  GCAATCATTTGGCAGATGGGCACGGGAATGAAGCCCAACCTCAGCCAGATTGGCATGGGAAAAGAAATCTCGGA  1826

Query 2352  CATTCTTCTCTTCTGCTGGGCCTTTGAACAAGAAGAGAGACCTACCTTCACCAAGCTCATGGACATGCTGGAGA  2425
            |||.||.|||||||||||||||||.||.||.||||||.|.||.|||||.||||||||||||||||||||.||||
Sbjct 1827  CATACTGCTCTTCTGCTGGGCCTTCGAGCAGGAAGAGCGGCCCACCTTTACCAAGCTCATGGACATGCTAGAGA  1900

Query 2426  AACTGCCAAAGCGAAACCGTCGCCTGTCTCACCCTGGACATTTCTGGAAGTCTGCAGAGCTG  2487
            |||||||||||||||||||.||||||||.|||||.|||||||||||||||||||||||||||
Sbjct 1901  AACTGCCAAAGCGAAACCGCCGCCTGTCGCACCCCGGACATTTCTGGAAGTCTGCAGAGCTG  1962

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.