Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13501
- Subject:
- NR_126496.1
- Aligned Length:
- 4870
- Identities:
- 398
- Gaps:
- 4443
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAAAATCAAGAACAGAAGTCTCTCAACATTTAAGTTTTACAAACAAATAGAATCTGAGCCACTGGGTTAAACA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGACAAACGACACACAGTAACAAATATTGAAGACATCATAATGCCAAAGCAACAGAAGCAGCACCAGAAATGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTGAGGCCACCATTTAATTAACGCAAGTTGAACATATGGCTTTGGTTACATGTGGTTCCAGGCCAGAGGCATG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAGTCAGTGTTTGTGGGAAAGCCAGGAGGAAAAGCTCCTCTCCCCACCTCCACCTTGTCACTCCAGGTTCTGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGACCCCATCTCGGGACACGGCCTCCCATTTCACTCCTGCACCAACCCCACTCTTGTAACACTGCACATGCAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATGTGAGCATCTTCAAAGTACGAATATTGCCTTCTTCATTTTAGAATCCATGATGTGCTTGTGGGGAGAATGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAATGCTCAAACATGAATGGAGAGAGACAGAGAGGAAGTGCAGGTCTAACCAAGGAAACCTTCTTTCCTAGAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AATCGTTGATGAGCCCGGAAAGAGTTGGCTGAACAACGGTAACAATTCTTTTATTATTATTTAACTTATTAAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TATTAGAAAAAGTAAAAGAGTGAGTCGAGGTTTTTGGATTGGAAGTAGGGACCCACTGAGTTCCCTCCAGGATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTGGAGTTTCTTTTACAGCCACATGTGGATAAGAAACTAAGGGCCACAGACCAAATGACAGGTCGGATGGCAAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCTGGAAAAGTCACACAGCTCAGCCTGTTGGAGGAAGAGGAGCAGTAGAACCTGTGTGGAGCCTGACAGAACCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGATGCCATTCACGAACCGAGAGGTCTTTCAAGATCACACACAGTTCTACGACACAGACATTTCGTCTTCTTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCACTCAGTAGCGGGGCCCATCCCTCTGTGCCTCCAAGGTCCGTGTGCCATGTGGAAAACTCAGGTGTTCTGTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCTGCCAGGACCTTCTTCCTGCTGCTTATTTAAGTGTCTGCTGCTTCGGGGCCTCAGGTGCCTGCTTTATCTCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTCTCCTTTACTATCAAGTCTTTAAGCAATTTGCCAAGACGGAGAATCTCACTGGCCTGGTGGGGCTGAGCCTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTTCACTGGCTGACCAACTGGGAAGTGGGCTGCTGCCTAGATCAGGTGCGTGCCACAGTTCATCTAGCCGTGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCAGAGTTCTAAGGTTATGCGCATGACCCCGTGTGTGGGCAGAGGCTCTTAGCAGGGGCCGAGAGCATTGGAGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CATCTTGAGGGCCAGAGTCCCCAGCCCCAGATCACAGATACGGCATGATCAAAATGTGAGGGAGCAGGGGCAGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GATTATTTGGAATAACGTGCTGAGTTTGTATACTTTTGACAATTAAAAGCCCTATGTCCCCCTGATGTTACGCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATGCTCCAGAGGAGCCACTCGGGACAAAGAATCAATAATGGGCGCTTGGTGTGCATTGAAAGCTGACAGTGTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TATTTGTGGGGACTATACAGGGAAAGGAATATGAAGCCTTGACAAGATATGGTGAGTATGTATCGGTGAGGTAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTAACTCATTCATAAGGGACTTTGCAAGGTGGCAACACTGGTTCAAAGATATTACGAGAATAAAGATTTTGTGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACTCAGAGAACGAAAAGGAATGCTGACGTAAGATCACAAAGTTAGATACTAAACTGGCTAATGTGCTACAGGGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGCAAAACTATAACCTTTGAGGTAATTTATCTGACCAGATAGGAATCATTTGCATCTCTGTAGAACAGAAAAAC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACTTACTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTATCTGGCTCTGTCCCCCAGGCTGGCGTGCAGTAGCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGATCTTGGTTTACTGCAACCTCCACCTCCTAGGCTCAAGCCATCCTCCCACCTCAGCCTCCAGAGTAGCTGGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACTACAGGCACACACCACCATGCCCAGCTAATTTTTGTATTTTTTGTAGAGAAGGGGTTTTGCCGCCATGTTGC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACAGGCTGGTCTCAAACTCTTGAGCTCAAGCCCACCTCAGCCTCTCAAAGTGCTGGGATTATAGGCGTGAGCTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCGTACCCAGACAGCACTTACATTTTAATAGTTTCTACACAGTACTATCTCATGTTATTTTATTTTTTAAAATC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GATAATGGGACTCTTGCTATGTTGCTCACACTAGTCTTGAACTCCTGGCCTCAAGCAATCCTTCCATCTTGGCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TCCAAAGTACTAGGGTTACAGGCATGAGCCGGGGCTCCTGGCCTAACTAATTTCAGAGTTAAGAACGTTTGGAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCTATTTTATAGTAAAAAATAAGTCAAAGCTACCTTCCCCTAGATAGCCAAATGACTCTCAGATGGGCTCGTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GACAGTGCTTTAATTTAATATTGAAAGAACTTTTTGCTTCCCCTCCTCCAAGTTTTAATAATTCTTAACAGAGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GAAACAGCAACAAAATTTTTGCTGTAGTGGGTATTAAAGAAGGGAAAACAATCATGAATGCCGGAGTCAAAATG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCCAAGGAGCGGAGGCACCAGCGTTCTCCACCTGGTTTGGCGGCGCACCAGCAGTGTGACCTGGAATCTGATCT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTCTGGAGCTCAGTGTCCTCACCTATAATATGGGGTATTGAACTACACACTTGGCAGGACTTTGCCCTAAAGCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AATTTTCAAAATAAAAAAAAAAAAGCCACTTCCCTTTTCCCACATTAACCCTGAGAGAGAAAGAGGAAGCGGGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGCCCGCACATGGAAGCAATTTATTGCAGACGTTCCTGGGCTGGGAGAGGAGCCTTCTGACTGCTGCAGAGACC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATCACCCGGTCCTGCACCTTTACCGGAGGTGCGGAGAACTGCTCGGCCCGCACCGGGCTCGGGGGTGTTCACGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCTGCGCTGCCTCCCCTGCGCGCAGGACAGGAGTCGCCAGAGGCCGGTGGTGGATTTCCTCCCCGCATCTCAGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TCTCCGTCCAAAGTCAAATTGCTCTTTTCTCCGCCCACGCGGGCGTGGCAGCTGATATCCGGCCGCTGGGCGTC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCCGCGCCCCCGGGGGCCCCGCCCTGCAGCTATCTCCGCGGCCCACCCGGCGGCGCCTCCCTGCAGGGCTGCTC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CCCAGCCCAAACCGCCGCGGCGCGACGTGGAGCCAGCCCCGCAAAGCTGCATCCACCCCCCGAGGACCAGCCCC 3182
Query 1 --------------ATGA-----CAGGTCGGAT----------GGCAACCCTG------GAAAAGTCACACAGC 39
|.|| |.||.|||.| |.||.||||| |||| |||||| |
Sbjct 3183 TCGAAGGCAAGGCCAGGACCTCCCCGGGCGGCTGCAGCCGTGAGCCACCCCTGTTTTGTGAAA---CACACA-C 3252
Query 40 TCAGCC----------------------------------------TGTT-----------GGA---GGAA--- 56
||.||| |||| ||| ||||
Sbjct 3253 TCTGCCATTTCAGGCCGCACTTGCCCGTTGCCATGGGCGTTTTCTATGTTGACACAAGCAGGGACACGGAATCC 3326
Query 57 ---GA---GGAGCAGTAGAACCT--GTGTGGAGC-------CTG-----ACAGAACCCAAGATG---------- 100
|| .|||..|.|||.|.| ||||.| || ||| .|||.| |.||||
Sbjct 3327 CTTGACTTTGAGTTGCAGATCGTGGGTGTTG-GCGTCTCCGCTGCTTTACCAGGA---AGGATGGAAGGGGCTT 3396
Query 101 ------CCATTCACGAACCGAGAGGT---CTT-TCAAGATCACACACAGTT--CTACGACA-CA-GACATTTCG 160
||||||.| || | ||| ||||| .|||| |||.| || || ||..||||
Sbjct 3397 CAGCCTCCATTCTC--AC-------TTTCCTTCTCAAG--------GAGTTGGCTAAG-CATCAGGAGTTTTC- 3451
Query 161 TCTT---CTTGCCACTCAGTAGCGGGGCCC--ATCCCT-------------------------CTGTGC----- 199
|||| ||| |.|||| ||.||| .||||| .||.||
Sbjct 3452 TCTTAGGCTT--CTCTCA------GGTCCCCTTTCCCTGAGAGGTGAAAAGTTTTTCAGAAAGGTGAGCAGCTT 3517
Query 200 --------CTCCAAGGGACCACTTCACACACCCCTTTTTCGCCTCCAGAGTAGATGGAACCGTGGAACGAGGGA 265
.|||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3518 TCTCTTTATTCCCAGGGACCACTTCACACACCCCTTTTTCGCCTCCAGAGTAGATGGAACCGTGGAACGAGGGA 3591
Query 266 ATCCTGCCCTCTGGTTGTGTCTGTCATCTCCTACTGGGACCAGAGCCACAAAAGCCACAAAAGACCCAACTCTC 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3592 ATCCTGCCCTCTGGTTGTGTCTGTCATCTCCTACTGGGACCAGAGCCACAAAAGCCACAAAAGACCCAACTCTC 3665
Query 340 TCCAGCGTGCAGGCATCCCAACTAGAGGAAGCAAGGAGGCAGAGACCAAGAGGACATCAAGAGGCGTTTGAACC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3666 TCCAGCGTGCAGGCATCCCAACTAGAGGAAGCAAGGAGGCAGAGACCAAGAGGACATCAAGAGGCGTTTGAACC 3739
Query 414 CGCAGAGAGGGCCTGGGAGCACAATGCTGAGC------------------------------------------ 445
||||||||||||||||||||||||||||||||
Sbjct 3740 CGCAGAGAGGGCCTGGGAGCACAATGCTGAGCCCCTTTGATTTCAGGAAGCTGTGGACCGTGTTTAGCCTGTGG 3813
Query 446 -------------------------------------------------------------------------- 445
Sbjct 3814 CTCTGTGTGCCCCTTGGCTGCTGCTGCTGCTTACTCCTGAGGGTGAAGTTGCTAACATAAGAAACGAGTAATTT 3887
Query 446 ----------------GAGAAAGAATTGTGCCA----------------------------------------- 462
|||||||||||||||||
Sbjct 3888 GGATTTGCGCTTCTTGGAGAAAGAATTGTGCCATGAAAAATGGAAAACTCCTGAGAAGCTGTTCCAGCGTCAGG 3961
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3962 AGAGCAGCAGACAAGCTGGACTGGGGAAGATTCTTCCTGCAAGACCTGCAGAGTGTATGACACATAACCAGCAC 4035
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4036 CCAAGAAATGTCTACCGAGGAATTAATGAATGAGCCATCTTGTGATCATCTGGCAAGACAGCCCAAGAATAAAG 4109
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4110 CCGTCACCATGGAGACTAAGAAGAGACAGAAAGACACTGGGTCTTCATTGTCTCGTCCAGCTGTTCATGAGGCC 4183
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4184 TTATCTGAAGCCCACGTGACCTCCGGACTACTCACTTACATGAGAGAATAAAGCTCTTTTTTGTTTAGACCAAA 4257
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4258 TAAATACATAATACAATTACATAATCCCTTGATTCCTTTTTATGACTGAGCTCAGAGACTATATTTTGTCATTT 4331
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4332 TAAATCACCTTTGTCTTACAGTTTATTTAACTGAAACAAATAAACAAACCAAAACACGCCAGTTTTTCACTCCT 4405
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4406 CTGTCAAAGCCTTTCCAAGATCACTAAGCTTGTGATGTCCTGGGTGAATGAAGAAGTAACAGTGTTTTCAACAA 4479
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4480 CATAGAAGCTTATTTCTCTCTCATATAAAAGAAGGCTGGAGTCTGGCTGGTATGGGAGATACAGCATCATCAAA 4553
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4554 GTTTTATCTTTTCGTCCTGCCATCCTTAGAATATGGCTTTCATCTTCAAGATCACTTCCTAAGCTATGAGGATG 4627
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4628 CAAAGGTATAAGAATGACATAGCGGACTTTGGGGACTCGGTGTGGGGAGAAGTTGGGAGGGGTGAGGGATAAGA 4701
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4702 GACTACATATTGGGTACAGTGTACACTGCTCTAAAATCTCAGAAATCACCACCAAAGAACCTATCCGTGGAATC 4775
Query 463 ------------------------------------------------------------ 462
Sbjct 4776 AAAAACCACCTATACCCCCAAAACCACTGAAATAAAACTAAAAATTAATTAAAAAAAAAA 4835
