Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13501
- Subject:
- NR_126500.1
- Aligned Length:
- 4521
- Identities:
- 454
- Gaps:
- 4059
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGGCAACAGCAACGAAACTCCGTCTCAAAAAAAAAAAAAAATTACAGTCATCTCCCAGAAAAATCAAGAAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGAACCTTGGAGGTTCAACCTATAGAAGATATGTTCTCATGGAATAAACCAAAAATAATTTTTATTTTCTAAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATCAAGAACAGAAGTCTCTCAACATTTAAGTTTTACAAACAAATAGAATCTGAGCCACTGGGTTAAACATGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAACGACACACAGTAACAAATATTGAAGACATCATAATGCCAAAGCAACAGAAGCAGCACCAGAAATGTTGCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGCCACCATTTAATTAACGCAAGTTGAACATATGGCTTTGGTTACATGTGGTTCCAGGCCAGAGGCATGGAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAGTGTTTGTGGGAAAGCCAGGAGGAAAAGCTCCTCTCCCCACCTCCACCTTGTCACTCCAGGTTCTGGTGAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCATCTCGGGACACGGCCTCCCATTTCACTCCTGCACCAACCCCACTCTTGTAACACTGCACATGCAAGATGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGCATCTTCAAAGTACGAATATTGCCTTCTTCATTTTAGAATCCATGATGTGCTTGTGGGGAGAATGAATGAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGCTCAAACATGAATGGAGAGAGACAGAGAGGAAGTGCAGGTCTAACCAAGGAAACCTTCTTTCCTAGAAAATC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTTGATGAGCCCGGAAAGAGTTGGCTGAACAACGGTAACAATTCTTTTATTATTATTTAACTTATTAAGTTATT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGAAAAAGTAAAAGAGTGAGTCGAGGTTTTTGGATTGGAAGTAGGGACCCACTGAGTTCCCTCCAGGATTGTGG 814
Query 1 --------------------------------------------------ATGACAGGTCGGATGGCAACCCTG 24
||||||||||||||||||||||||
Sbjct 815 AGTTTCTTTTACAGCCACATGTGGATAAGAAACTAAGGGCCACAGACCAAATGACAGGTCGGATGGCAACCCTG 888
Query 25 GAAAAGTCACACAGCTCAGCCTGTTGGAGGAAGAGGAGCAGTAGAACCTGTGTGGAGCCTGACAGAACCCAAGA 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAAAGTCACACAGCTCAGCCTGTTGGAGGAAGAGGAGCAGTAGAACCTGTGTGGAGCCTGACAGAACCCAAGA 962
Query 99 TGCCATTCACGAACCGAGAGGTCTTTCAAGATCACACACAGTTCTACGACACAGACATTTCGTCTTCTTGCCAC 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCCATTCACGAACCGAGAGGTCTTTCAAGATCACACACAGTTCTACGACACAGACATTTCGTCTTCTTGCCAC 1036
Query 173 TCAGTAGCGGGGCCCATCCCTCTGTGCCTCCAAG---------------------------------------- 206
||||||||||||||||||||||||||||||||||
Sbjct 1037 TCAGTAGCGGGGCCCATCCCTCTGTGCCTCCAAGGTCCGTGTGCCATGTGGAAAACTCAGGTGTTCTGTCTCTG 1110
Query 207 ---GGACC-ACTTC---------------------------------ACACA--------------------CC 223
||||| .|||| .|.|| |.
Sbjct 1111 CCAGGACCTTCTTCCTGCTGCTTATTTAAGTGTCTGCTGCTTCGGGGCCTCAGGTGCCTGCTTTATCTCTTTCT 1184
Query 224 CCTTT--------------------TTCGCC--------------------------------------TCC-- 237
||||| ||.||| |||
Sbjct 1185 CCTTTACTATCAAGTCTTTAAGCAATTTGCCAAGACGGAGAATCTCACTGGCCTGGTGGGGCTGAGCCTTCCTT 1258
Query 238 -----------------------------------AGAGTAGATGGAACCGTGGAACGAGGGAATCCTGCCCTC 276
|||..||||||||||||||||||||||||||||||||||
Sbjct 1259 CACTGGCTGACCAACTGGGAAGTGGGCTGCTGCCTAGATCAGATGGAACCGTGGAACGAGGGAATCCTGCCCTC 1332
Query 277 TGGTTGTGTCTGTCATCTCCTACTGGGACCAGAGCCACAAAAGCCACAAAAGACCCAACTCTCTCCAGCGTGCA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGGTTGTGTCTGTCATCTCCTACTGGGACCAGAGCCACAAAAGCCACAAAAGACCCAACTCTCTCCAGCGTGCA 1406
Query 351 GGCATCCCAACTAGAGGAAGCAAGGAGGCAGAGACCAAGAGGACATCAAGAGGCGTTTGAACCCGCAGAGAGGG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGCATCCCAACTAGAGGAAGCAAGGAGGCAGAGACCAAGAGGACATCAAGAGGCGTTTGAACCCGCAGAGAGGG 1480
Query 425 CCTGGGAGCACAATGCTGAGC----------------------GAG------------------------AAAG 452
||||||||||||||||||||| ||| ||||
Sbjct 1481 CCTGGGAGCACAATGCTGAGCAATGTGTGAAGATACCAGGAAGGAGGCCAGAGCTTCAGGAAACCGCTGCAAAG 1554
Query 453 A------------------ATTGTGCCA---------------------------------------------- 462
| ||||||.||
Sbjct 1555 ATGATCTCACAAAGAAACCATTGTGGCAGGGCTCCTGGAGCACTCAAGTTGATGTGACGTGTCCTACTCCTGAG 1628
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1629 AGCACGCAACCCTGCTGGCTCCTTGGGCTTGCATGGCTCAGGGAAAGGAAAATAGCCCGGGTGTTTGGAAGAGA 1702
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1703 AGTATGTGTGGATGGAATTATTCAAATGCTGATGGATGGATTGGGTCTCCTCTCCTGCTGGCCCGGCAGCCTCT 1776
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1777 CCGTGGAAGGCTTTGCCCAGGAGATGGGTCACAACAGCTCTGGTGAGATGCTGGAAACATAAGCCCAGGCAGAT 1850
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1851 AGAATGGCAGTGAGTCACAGTAAACCGACAACCGTCAGGTGCTCAGGAGGGAAGCTGAAGCCAGGGGACTCGCT 1924
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1925 GTGCTGAGCTAAGCGAGGAGCAGGACTCTCCTGTTGTGCAAAACACAAAGAGCAGAGTGTTCAAGTCCAAGGAT 1998
Query 463 -------------------------------------------------------------------------- 462
Sbjct 1999 CAGGTTCCTCCAAATGGAAGCCCAAGCTGTGCACGCTGAGCTCCAGGGCTGGCGATACAATCACCTGCCTCTGC 2072
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2073 CCATGCAGGAAGGTACCACCCAAACATACCCATTTCTCCCGGGGCATGGGCAGGGGCCAGGGGAGACAGGGCCC 2146
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2147 TACCACTTCCCATGTAAAACTGGGTGAGCAGCCCAGCGCCCGTCAGAGCCGAAGCACCTCACCTGCACCCCCGC 2220
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2221 CCCCGCCCCCGCCCCCGCCCCGCCCCGCCCAGCCTTGTAATCTGGGCTCTGCTCGCCATGTGCTCTGTGCTAGT 2294
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2295 GAAACTGCCCTCAGAGCAGAAATAAACTGTTGGCTCTCAAGTTTTTCCAGACTAACCGGACTGGCCAATGCCTG 2368
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2369 AGGCTCTGTGTTCAAGATAAAAGTGCCTAAGAAAGAAAAGTGCAGGTAGGCAGTCCCCACTTCTGCAGGGCTGG 2442
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2443 TGGGCTCTGGGGATCCTGTCTCAGCCTGCTGAACAGCCCAGAGTGGCTTTAAAAAAAAAAAAAAAGCCTGAACA 2516
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2517 ACCTTTTTTTGCACATGGGTCACAGTCAAGCTTCTTAAACTTGGATGACAGTAAACCTATGACTAACTGGATAA 2590
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2591 TTAAAGCCACAAGTCTGGAGGCCTGGGCAGGGCTCTGCTCTGGAATCTCCGGTGGCCTGTTCCATAGGCCAGCG 2664
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2665 TCCCTTGTCCTTCCCATAGCAGAAATGCTTTCGTGAGTTGGAAACCCTCTGTGGTGACCTCTACATCTTCTCAA 2738
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2739 GGTCAGTTATCCACTTGTCCATGGCTTCGTGCCCCCATCCCACATCCCTGTCCACTGCATGGAAGGAGGAAATC 2812
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2813 TAACCCACCCGCCACAGTGCAGCCCACACTCCCCACACTGCCCCGACAGGAACATGACAGAAGGTTTCCAACTA 2886
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2887 AAACCAAAGTTACTCAGCAAAGCTTCCTGCCAGGCAGCCGTGCTGGAGGGCGCAGCGTGCCTCTGTCTGCTCTT 2960
Query 463 -------------------------------------------------------------------------- 462
Sbjct 2961 TCTGTTCTATGAAACTTCTCTGCTGCAAGCACTTGAGAGCCTCTTGGCTTCCTGGGGAGAGTGGACTGAACTTC 3034
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3035 AAAGCAGACACAGCTGCAGCTAAGAAGCCCCTGGGTTGCCTCAAAGACTCTGTCTCCTCCCAGTCTGAAGCTTC 3108
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3109 TGGTGAATGTTTCTCCCTCATTCCTGAAACAACAGATAGAGCTGTTGAAGTTTACAACGTCCCCCAAGGCATTT 3182
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3183 CTGTGTTTCTGCCTTTAATCTAGGGCCCAAGTGACCACCCACAAGAATGCCCCGAACACTCACTGCCTCAGGAT 3256
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3257 GCGTCCTGCAATTTACATTCCCGTGGTGCCTCTGCCTTCACCCCACGCTGGTGCCCCCGCCTCCACTCCAGCCG 3330
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3331 TCTCTCTGGCCACCCCTGCCCCCTCGCTTCTCTCCATCATGCCAAAAAGTGCCCTCGTCCTCTGACGGTGGAAG 3404
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3405 AGGGGATTCAGTTAGGAGTCGGGATGGCCTATGTGATTTTTGTACACTATTCCAGAATAGGTGTGTGGTTGCTT 3478
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3479 TAAAAATCAAAAGAAATGTGTCTTCCAAATCTTTGAAGCCCTTTGATTTCAGGAAGCTGTGGACCGTGTTTAGC 3552
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3553 CTGTGGCTCTGTGTGCCCCTTGGCTGCTGCTGCTGCTTACTCCTGAGGGTGAAGTTGCTAACATAAGAAACGAG 3626
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3627 TAATTTGGATTTGCGCTTCTTGGTAAAAACCCCTTTCCATTAACCTGTAAAACTCTAGAGGGCAGGGGATCTCT 3700
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3701 CACATTGAATCTGGTGGTCTTGTGAGAATGCCTGGAAAATAGTAGGCATTCTCCAATGATTGTTGTTGGATTAG 3774
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3775 TGTCATTGCTTAAAGAAAAAAAAAATCAAAGAAAGTCACTCTCTTAGCTCAGGATGGTGTATTTGCAAGTGTTT 3848
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3849 AGGCCAAACATGTGTTGAGAAATTGCACATATACTGTGTACAACTCATGTCATCAGGAACTTATGTTACCAAAC 3922
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3923 CTCTTGTTTCACCCACTATCTTATCATCTGTATTGAGCAGACTAAGACCTAGCAAACCAGATGAGCCTTCAGGA 3996
Query 463 -------------------------------------------------------------------------- 462
Sbjct 3997 GATCTGCAGACTGATAAGGGCATTTGAGATAAAGAAATCCCACAGAGTTCTAAAACCAAAATGAAAAGTATAGA 4070
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4071 GATGATTGTCCTGTGAAATGGCCCCAAGCCTCAGACCCATTACCATCTACCTCTGGCCTCACTTGGGGGCTACT 4144
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4145 GTAGATGCTCAGCACAGAACCTCTTAGCTGTGGTTGTGACTTCCTGGCTGGCCAGGCCTGTAAGAGGCGGAGGA 4218
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4219 AGAAGTGCTGTGGCGAGCTCTGTGACTCAGAGGAAAGCAGCCAGGACATGACGTCCTGCACGACTGCCTGGGGT 4292
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4293 GGCTGCAGGGAGGTGGCCTAGGGACAGATGAAGCTGCAGTGGGGACCACCTCCCCTGCAGAAGCAGTTTTCTTG 4366
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4367 TCCCTCCTCATCCAAACACACTCCAACTTAAAAAATCATTATGCATAACTCCGAAAGCAGGTCCATGCTGTACC 4440
Query 463 -------------------------------------------------------------------------- 462
Sbjct 4441 TGTGTGTGTCCTGCCAGATTTCTTTGTTCCTGGGGGAAAACAGCAATAAACATCACATTCCTTTTCAAAAAAAA 4514
Query 463 ------- 462
Sbjct 4515 AAAAAAA 4521
