Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13627
- Subject:
- XM_006540667.1
- Aligned Length:
- 4062
- Identities:
- 2119
- Gaps:
- 1593
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGGGCTGGAGGCCCAGAGGCTGCCTGGGGCTGAGGAGGCCCCCGTGAGGGTGGCCCTTCGAGTTCGCCCATT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTGCCCAAGGAGCTGCTGCATGGTCATCAGAGTTGCCTGCGTGTGGAGCCTGAGCGGGGTCGAATCACCCTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCGGGACCGACACTTTGGGTTCCATGTGGTCCTGGGAGAGGACACTGGGCAAGAGGCTGTGTACCAGGCTTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGCAGCCCCTCCTCGAGGCTTTCTTTGAGGGCTTCAATGCCACCGTCTTTGCCTATGGTCAGACAGGCTCTGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGACATATACCATGGGGGAGGCCAGTGTGGCCTCCCTGCATGAAGATGAACAAGGTATCATCCCAAGGGCCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGCTGAGGCCTTCAAGCTCATTGATGAGAATGACCTGCTGGACTGCCTGGTGCATGTATCCTACCTGGAACTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TACAAGGAAGAGTTCCGAGATCTGCTAGAAGTTGGCACTGCCAGCCGGGACATCCAGCTTCGGGAAGATGATCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGAAATGTTGTGCTCTGTGGGGTGAAAGAAGTGGATGTAGAAGGCCTGGACGAGGTGCTGAGCCTCCTAGAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGCAATGCTGCGCGCCACACAGGCGCCACACACTTCAACCGCCTCTCCAGCCGCTCACACACAGTCTTCACT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTGACCCTGGAGCAGCGGGGACGGACTCCTAGCCGCTTGCCTCGACCCGCCGCTGGCCACCTGCTGGTCTCCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATTCCACTTCGTGGACCTGGCAGGCTCCGAGAGGGTTCTGAAGACCGGCAGCACCGGAGAACGGCTCAAAGAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCATCCAGATTAACAGCACCCTGCTGGCGCTGGGAAATGTCATTAGCGCCCTGGGGGACCCCCAGCGCCGAGGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCACATCCCTTACCGTGATTCCAAGATCACCCGGATCCTCAAAGACTCTCTGGGAGGGAATGCCAAGACAGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATGATCGCCTGCGTCAGCCCCTCCTCCTCCGACTTCGATGAGACCCTCAACACCCTAAACTACGCCAGCCGTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTCAGAACATCCGCAATCGCGCCACAGTCAACTGGCGTCCAGAGGCCGAGCGCGTCCCTGAGGAACAGGCGGCG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGTGCGCGCGGGCCGCCGCGACACCGCTCGGAAACGCGCATCATCCATCGCGGCCGGCGCGTGCCCTGCCCTGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGTGGGCTCCGCGGCAGTCGCTGCGGGCCTGGGGGCCGAGTGCGCGCGCTGCCGGGCCCGCACCAGCGCCGCCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACAGCCTCCTGCGAGAGCTTCAGGCCGAGCCCGGGCTGCCTGGCGCTGCCGCCCGCAAAGTGCGGGACTGGCTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGCGCGGTGGAGGGCGAGCGCAGCACCTTGAGCTCTGCCTCCGGACCCGACAGCGGCATCGAAAGCGCTCCAGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CGAGGACCAGGCGGCACAGGGGACCAGCGGGAGAAAGGGAGATGAGGGGACCCAGCAGCTGTTGACCCTGCAGA 1480
Query 1 -----------------------------------------------------------ATGGAGCAGTACAAA 15
|||||||||||||||
Sbjct 1481 GCCAGGTGGCCCGGCTAGAGGAGGAGAATCGAGATTTCCTGGCGGCTTTGGAGGACGCCATGGAGCAGTACAAA 1554
Query 16 CTGCAGAGCGACCGGCTGCGTGAGCAGCAGGAGGAGATGGTGGAACTGCGGCTGCGGTTAGAGCTGGTGCGGCC 89
||||||||.|||||.|||||.|||||||||||.||||||||.|||||||||||.||..|||||||||..|.|||
Sbjct 1555 CTGCAGAGTGACCGCCTGCGGGAGCAGCAGGAAGAGATGGTAGAACTGCGGCTACGCCTAGAGCTGGCACAGCC 1628
Query 90 AGGCTGGGGGGGCCCGCGGCTCCTGAATGGCCTGCCTCCCGGGTCCTTTGTGCCTCGACCTCATACAGCCCCCC 163
.||||||||.|..|||.||||||||.|.|||.||||.||.||.|||||||||||.||.|||||.||||||||||
Sbjct 1629 TGGCTGGGGTGCACCGGGGCTCCTGCAGGGCTTGCCACCGGGATCCTTTGTGCCCCGGCCTCACACAGCCCCCC 1702
Query 164 TGGGGGGTGCCCACGCCCATGTGCTGGGCATGGTGCCGCCTGCCTGCCTCCCTGGAGATGAAGTTGGCTCTGAG 237
||||||||||||||.|.||..|||||||||||.||||..|..|.||.||.||||||||.||||||.||||||||
Sbjct 1703 TGGGGGGTGCCCACACTCACATGCTGGGCATGATGCCCTCGACATGTCTTCCTGGAGAAGAAGTTAGCTCTGAG 1776
Query 238 CAGAGGGGAGAGCAGGTGACAAATGGCAGGGAGGCTGGAGCTGAGTTGCTGACTGAGGTGAACAGGCTGGGAAG 311
| ||||||||...|.|||||.|||.|....|||.|||.||.||.|..|||.|.|||...||.|.||
Sbjct 1777 C---------AGCAGGTGGTGAGTGGCAAGGAAGTCAAAGCAGAGGTGTTGGCCCAGGCGGACAAATTGAGGAG 1841
Query 312 TGGCTCTTCAGCTGCTTCAGAGGAGGAAGAGGAGGAG------------------------GAGGAGCCGCCCA 361
||.||||||..||.|.|||||||||||||.||||||| ||||||||.||||
Sbjct 1842 TGCCTCTTCCACTACATCAGAGGAGGAAGGGGAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAGCCACCCA 1915
Query 362 GGCGGACCTTACACCTGCGCAGAAATAGGATCAGCAACTGCAGTCAGAGGGCGGGGGCACGCCCAGGGAGTCTG 435
|||||||||||.||.|||||||||||.|||||||||||||.|||||||||||.|||....|.||||||||.|..
Sbjct 1916 GGCGGACCTTATACTTGCGCAGAAATGGGATCAGCAACTGGAGTCAGAGGGCAGGGTTGAGTCCAGGGAGCCCA 1989
Query 436 CCAGAGAGGAAGGGCCCAGAGCTTTGCCTTGAGGAGTTGGATGCAGCCATTCCAGGGTCCAGAGCAGTTGGTGG 509
||.||.|||||||||||||||.|.||||..||.|||...|.|||.|||||.||| |..|||.| |||.|||.|
Sbjct 1990 CCTGACAGGAAGGGCCCAGAGGTCTGCCCAGAAGAGCCAGCTGCTGCCATCCCA-GCACCACA--AGTCGGTAG 2060
Query 510 GAGCAAGGCCCGAGTTCAGGCCCGCCAGGTCCCCCCTGCCACAGCCTCAGAGTGGCGGCTGGCCCAGGCCCAGC 583
..||||||.||.|||||||.|||||||||.|||..||||||..|||||.||||||||.||||||||||||||.|
Sbjct 2061 CGGCAAGGTCCCAGTTCAGACCCGCCAGGCCCCAGCTGCCATGGCCTCTGAGTGGCGACTGGCCCAGGCCCAAC 2134
Query 584 AGAAGATCCGGGAGCTGGCTATCAACATCCGCATGAAGGAGGAGCTTATTGGCGAGCTGGTCCGCACAGGAAAG 657
||||.||||||||.|||||.||||||||||||||||||||||||||.|||||.|||||||||||.|||||.|||
Sbjct 2135 AGAAAATCCGGGAACTGGCCATCAACATCCGCATGAAGGAGGAGCTCATTGGTGAGCTGGTCCGGACAGGGAAG 2208
Query 658 GCAGCTCAGGCCCTGAACCGCCAGCACAGCCAGCGTATCCGGGAGCTGGAGCAGGAGGCAGAGCAGGTGCGGGC 731
||.||.||||||||||||||.||.|||||||||||.|||||||||||||||||||||||.||||..||||||||
Sbjct 2209 GCGGCCCAGGCCCTGAACCGTCAACACAGCCAGCGCATCCGGGAGCTGGAGCAGGAGGCTGAGCGTGTGCGGGC 2282
Query 732 CGAGCTGAGTGAAGGCCAGAGGCAGCTGCGGGAGCTCGAGGGCAAGGAGCTCCAGGATGCTGGCGAGCGGTCTC 805
.||||||.|||||||.|||||||||||.||.|||||.|||||||.|||||.|||.|||||..|||||.||||..
Sbjct 2283 GGAGCTGTGTGAAGGGCAGAGGCAGCTTCGAGAGCTGGAGGGCAGGGAGCCCCAAGATGCCAGCGAGAGGTCCA 2356
Query 806 GGCTCCAGGAGTTCCGCAGGAGGGTCGCTGCGGCCCAGAGCCAGGTGCAGGTGCTGAAGGAGAAGAAGCAGGCT 879
||||||||||.|||||.|.|||.||.|||||.|||||.|||||||||||||||||||||||||||||||||||.
Sbjct 2357 GGCTCCAGGAATTCCGTAAGAGAGTGGCTGCAGCCCAAAGCCAGGTGCAGGTGCTGAAGGAGAAGAAGCAGGCA 2430
Query 880 ACGGAGCGGCTGGTGTCACTGTCGGCCCAGAGTGAGAAGCGACTGCAGGAGCTCGAGCGGAACGTGCAGCTCAT 953
||.|||||.|||||||||||||||||.||.|||||||..||.||.||||||||.|||.||||.|||||||||||
Sbjct 2431 ACAGAGCGACTGGTGTCACTGTCGGCTCAAAGTGAGACTCGGCTACAGGAGCTGGAGAGGAATGTGCAGCTCAT 2504
Query 954 GCGGCAGCAGCAGGGACAGCTGCAGAGGCGGCTTCGCGAGGAGACGGAGCAGAAGCGGCGCCTGGAGGCAGAAA 1027
|||||..||||||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.|||.|.||.|
Sbjct 2505 GCGGCGACAGCAGGGGCAGCTGCAGAGGCGGCTCCGTGAGGAGACAGAGCAGAAGCGGCGCCTAGAGACGGAGA 2578
Query 1028 TGAGCAAGCGGCAGCACCGCGTCAAGGAGCTGGAGCTGAAGCATGAGCAACAGCAGAAGATCCTGAAGATTAAG 1101
|||.||||||||||||.|||||||||||||||||.||||||||.|||||||||||.|||||||||||.||.|||
Sbjct 2579 TGAACAAGCGGCAGCATCGCGTCAAGGAGCTGGAACTGAAGCACGAGCAACAGCAAAAGATCCTGAAAATCAAG 2652
Query 1102 ACGGAAGAGATCGCGGCCTTCCAGAGGAAGAGGCGCAGTGGCAGCAACGGCTCTGTGGTCAGCCTGGAACAGCA 1175
||.||||||||.||.||||||||||||||||||||||||||||||||.|||||||||||.||||||||.|||||
Sbjct 2653 ACAGAAGAGATTGCAGCCTTCCAGAGGAAGAGGCGCAGTGGCAGCAATGGCTCTGTGGTGAGCCTGGAGCAGCA 2726
Query 1176 GCAGAAGATTGAGGAGCAGAAGAAGTGGCTGGACCAGGAGATGGAGAAGGTGCTACAGCAGCGGCGGGCGCTGG 1249
|||||||||.|||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||
Sbjct 2727 GCAGAAGATCGAGGAGCAGAAGAAGTGGCTGGACCAGGAGATGGAAAAGGTGCTGCAGCAGCGGCGGGCGCTGG 2800
Query 1250 AGGAGCTGGGGGAGGAGCTCCACAAGCGGGAGGCCATCCTGGCCAAGAAGGAGGCCCTGATGCAGGAGAAGACG 1323
|||||.||||.||||||||.|.|||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 AGGAGTTGGGAGAGGAGCTTCGCAAGCGGGAGGTCATCCTGGCCAAGAAGGAGGCCCTGATGCAGGAGAAGACG 2874
Query 1324 GGGCTGGAGATCAAGCGCCTGAGATCCAGCCAGGCCCTCAACGAGGACATCGTGCGAGTGTCCAGCCGGCTGGA 1397
|||||.||||.||||||||||||.||||||||||||||.||.||.|||||.|||||.|||||||||||.||.||
Sbjct 2875 GGGCTTGAGAGCAAGCGCCTGAGGTCCAGCCAGGCCCTAAATGAAGACATTGTGCGTGTGTCCAGCCGCCTAGA 2948
Query 1398 GCACCTGGAGAAGGAGCTGTCCGAGAAGAGCGGGCAGCTGCGGCAGGGCAGCGCCCAGAGCCAGCAGCAGATCC 1471
.|||||||||||||||||.||.||||||||.||||||||||||||.|||||||||||||.|||||||||||||.
Sbjct 2949 ACACCTGGAGAAGGAGCTATCTGAGAAGAGTGGGCAGCTGCGGCAAGGCAGCGCCCAGAACCAGCAGCAGATCA 3022
Query 1472 GCAGGGAGATCGACAGCCTGCGCCAGGAGAAGGACTCACTGCTCAAGCAGCGCCTGGAGATCGACGGCAAGCTG 1545
|..|||||||.||||.|||||||||.|||||||||||||||.|.|||||.|||||||||||.||..||||||||
Sbjct 3023 GAGGGGAGATAGACACCCTGCGCCAAGAGAAGGACTCACTGTTGAAGCAACGCCTGGAGATTGATAGCAAGCTG 3096
Query 1546 AGGCAGGGGAGTCTGCTGTCCCCCGAGGAGGAGCGGACGCTGTTCCAGTTGGATGAGGCCATCGAGGCCCTGGA 1619
||||||||.||.||||||||.||.|||||.|||.||||.|||||||||.|||||||.|||||||||||||||||
Sbjct 3097 AGGCAGGGAAGCCTGCTGTCACCTGAGGAAGAGAGGACACTGTTCCAGCTGGATGAAGCCATCGAGGCCCTGGA 3170
Query 1620 TGCTGCCATTGAGTATAAGAATGAGGCCATCACATGCCGCCAGCGGGTGCTTCGGGCCTCAGCCTCGTTGCTGT 1693
.||||||||.|||||.|||||||||||.|||||||||||||||||||||||.|||||.||.|||||.|||||||
Sbjct 3171 CGCTGCCATCGAGTACAAGAATGAGGCTATCACATGCCGCCAGCGGGTGCTACGGGCTTCGGCCTCCTTGCTGT 3244
Query 1694 CCCAGTGCGAGATGAACCTCATGGCCAAGCTCAGCTACCTCTCATCCTCAGAGACCAGAGCCCTCCTCTGCAAG 1767
|||||||.||||||||.||||||||.||||||||||||||.||.||||||||||||||||||||.||.||||||
Sbjct 3245 CCCAGTGTGAGATGAATCTCATGGCAAAGCTCAGCTACCTTTCCTCCTCAGAGACCAGAGCCCTGCTGTGCAAG 3318
Query 1768 TATTTTGACAAGGTGGTGACGCTCCGAGAGGAGCAGCACCAGCAGCAGATTGCCTTCTCGGAACTGGAGATGCA 1841
||||||||||||||||||||.||||||||||||||.||||||||.|||||||||||||||||.|||||||||||
Sbjct 3319 TATTTTGACAAGGTGGTGACACTCCGAGAGGAGCAACACCAGCAACAGATTGCCTTCTCGGAGCTGGAGATGCA 3392
Query 1842 GCTGGAGGAGCAGCAGAGGCTGGTGTACTGGCTGGAGGTGGCCCTGGAGCGGCAGCGCCTGGAGATGGACCGCC 1915
||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 3393 GCTGGAGGAGCAGCAGCGGCTGGTGTACTGGCTGGAGGTGGCCCTGGAGCGGCAGCGCCTGGAGATGGACCGGC 3466
Query 1916 AGCTGACCCTGCAGCAGAAGGAGCACGAGCAGAACATGCAGCTGCTCCTGCAGCAGAGTCGAGACCACCTCGGT 1989
||||||||||||||||||||||||||||||||||..|.|||||||||||.||||||.|.|||||||||||.||.
Sbjct 3467 AGCTGACCCTGCAGCAGAAGGAGCACGAGCAGAATGTACAGCTGCTCCTCCAGCAGGGCCGAGACCACCTTGGC 3540
Query 1990 GAAGGGTTAGCAGACAGCAGGAGGCAGTATGAGGCCCGGATTCAAGCTCTGGAGAAGGAACTGGGCCGTTACAT 2063
||.||||||||||||||||.||||||||||||||||||||||||.|||||||||||||||||.||.||..||||
Sbjct 3541 GAGGGGTTAGCAGACAGCAAGAGGCAGTATGAGGCCCGGATTCACGCTCTGGAGAAGGAACTAGGTCGACACAT 3614
Query 2064 GTGGATAAACCAGGAACTGAAACAGAAGCTCGGCGGTGTGAA-CGCTGTAGGCCACAGCAGGGGTGGGGAGAAG 2136
|||||||||||||||.|||||.|||||||||.|.|..| ||| |.|||.||||||.|||.|||||.|.||||.|
Sbjct 3615 GTGGATAAACCAGGAGCTGAAGCAGAAGCTCAGTGCAG-GAAGCACTGCAGGCCAGAGCCGGGGTTGTGAGAGG 3687
Query 2137 AGGAGCCTGTGCTCGGAGGGCAGACA--GGCTCCTGGAAATGAAGATGAGCTCCACCTGGCA---CCCGAGCTT 2205
||.|||||.|||..|||...|||||| |.|| ||||||||||||||.||||||.|..||| ||.||.|.|
Sbjct 3688 AGAAGCCTCTGCCTGGAAAACAGACAATGCCT--TGGAAATGAAGATGGGCTCCATCCCGCAGCTCCTGAACCT 3759
Query 2206 CTCTGGCTGTCCCCCCTCACT-GAGGGGGCCCCCCGCACCCGGGAGGAGACGCGGGACTTGGTCCACGCTCCGT 2278
|||||||.||||.|||| .|| |||||||...||||.....||||.|||.|.||||||||||||||.||.||..
Sbjct 3760 CTCTGGCAGTCCTCCCT-TCTGGAGGGGGTGTCCCGTGTGTGGGATGAGTCCCGGGACTTGGTCCATGCCCCAC 3832
Query 2279 TACCCTTGACCTGGAAACGCTCGAGCCTGTGTGGTGAG-GAGCAGGGGTCCCCCGAGGA-ACTGAGGCAGCGGG 2350
|||||.||||.|||||||||||.|||.|||| .|| ||||||||.|||.|.||||| .|| |||...||||
Sbjct 3833 TACCCCTGACATGGAAACGCTCAAGCTTGTG----CAGCGAGCAGGGCTCCTCTGAGGAGTCT-AGGGTCCGGG 3901
Query 2351 AGGCGGCTGAGCCCCTGGTGGGGCGGGTGCTTCCTGTGGGTGAGGCAGGCCTGCCCTGGAACTTTGGGCCTTTG 2424
||.|..||||.||||..||.|||||||||||.|||.|||||||.|..|||||..|||||||||||||.||.|||
Sbjct 3902 AGACAACTGAACCCCCAGTAGGGCGGGTGCTACCTATGGGTGAAGTGGGCCTCTCCTGGAACTTTGGACCCTTG 3975
Query 2425 TCCAAGCCCCGGCGGGAACTGCGACGAGCCAGCCCGGGGATGATTGATGTCCGGAAAAACCCCCTG 2490
.|||||||||||.||||||..|||.||.|||||||.||||||||.||.|||.|||||||||||.||
Sbjct 3976 CCCAAGCCCCGGTGGGAACCCCGAAGAACCAGCCCAGGGATGATCGACGTCAGGAAAAACCCCTTG 4041
