Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13766
- Subject:
- NR_135753.2
- Aligned Length:
- 5774
- Identities:
- 220
- Gaps:
- 5533
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGTACCTCACTGTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCTACCACAGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCACTGCCCTCTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGCTTGACACTGGGGAATCCAGCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGTCCAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAACTCTCTAGAAATGTCATGATTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGCTTCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCCCCCAAATTAAGGACCCATTTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCTTCTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAGATTGATGGGCCTCCCCAAATC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAATTTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCCAGATTCCCTTTTGAACACACA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TACCTTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTTCCCTGAGACCATGTTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCCACAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTGGCCTCAATGGTCTTGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTAGCAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTGAGGGTCCCAGAGCACA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CACCCTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGACTTTTGTGAGGGATTTTAAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACAAAAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAAAATGATTTTTGAAGTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTAAATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTTGAAGCTTTACAAGATCTGATT 1924
Query 1 -------------------------------ATG-----GGGGGCGGAGTGAGCGGTGAACACAC--TGAACAG 36
||| |||||.|.| ||||||| |||| |.
Sbjct 1925 TTTTTCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAA----------AACACACATTGAA-AT 1987
Query 37 AA----------------TCTGA---------GAT----TTAATAAGCC--------AAA--------TCAACA 65
|| |.||| ||| ||.||| | ||| ||| .
Sbjct 1988 AAGACCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATA---CTGACTTTGAAATATTTTTGTCA--C 2056
Query 66 ATGTGGGAAG--TTC-----------------GTTTTGTTTT-TTTTTTTTGAGACGGAGTCTCGCTCTGTCAC 119
|||| |.||| ||| |||||.|||| ||.||.|||||||||||||||||||||||.|
Sbjct 2057 ATGT-GAAAGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGC 2129
Query 120 CCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCC 193
||||||||.||||||.||||..||||||||||||||||||||||||||||.|.|||||||||||||||||||||
Sbjct 2130 CCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCC 2203
Query 194 TCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTT--------- 258
|||||||.||.||||||||||||.|||||||||||||||||.|||||||||||||||||||||||
Sbjct 2204 TCAGCCTCCCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGA 2277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2278 CGGGGTTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAG 2351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2352 TGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCC 2425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2426 CGTGCACATTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTT 2499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2500 ACTGCCCAGATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCAT 2573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2574 AAACAGAAAGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTT 2647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2648 TCAAAGGATGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAA 2721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2722 AATGTTTTTTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAA 2795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2796 TTATTTTTTTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAAT 2869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2870 GCTACGCTCTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACC 2943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2944 TGCTGCCCGGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGC 3017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3018 ACTGTTCTTACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAA 3091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3092 AATAGGAACTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCT 3165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3166 ACATGTATATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTA 3239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3240 CCTATGATTTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAAT 3313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3314 GGAGCTATGAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTT 3387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3388 TGAAATTTTACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAAC 3461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3462 AGCAGTGGGCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGA 3535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3536 TGAGAAGTGGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCAT 3609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3610 TCTTAATCTTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTG 3683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3684 TGTCCAAAGCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGG 3757
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3758 TAGAAAAGTATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTA 3831
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3832 AGTTTACTTCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCT 3905
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3906 TCCTATGAAGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTT 3979
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3980 ATCATACCAAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAG 4053
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4054 CACATTCTTAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCT 4127
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4128 GGCTAACGGATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAA 4201
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4202 CATCTTTTGGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCAC 4275
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4276 TTCTGTTTTACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTG 4349
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4350 GCTTATGAGGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCA 4423
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4424 ATTTTTAAAATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATA 4497
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4498 AAGTACTTAAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATT 4571
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4572 TCTAACTGGACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACA 4645
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4646 CACTCTCTTTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTG 4719
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4720 GTTTTCATTCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTT 4793
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4794 TTCTTCAAACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTC 4867
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4868 TCGGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTT 4941
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4942 TGAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCG 5015
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5016 CGCACCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATT 5089
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5090 GAGCTGAGATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAG 5163
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5164 TTTCACTGTGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCT 5237
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5238 CTAGGAAAGGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTT 5311
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5312 GAAGTATGACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGC 5385
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5386 AGAAGGTGTAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCA 5459
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5460 CTCAAGTGTGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCT 5533
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5534 AAATGATCCAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTG 5607
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5608 GAGTGTGGCTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGA 5681
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5682 GCTTGAACCATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACG 5755
Query 259 -- 258
Sbjct 5756 AA 5757
