Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13766
Subject:
NR_135757.2
Aligned Length:
5843
Identities:
220
Gaps:
5602

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGTACCTCACTGTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGGCTTCTGTACTGCTGCACA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGCTGTTCCCTCTGCTTGGAATGCTCATAACACATTTCCATTTATTCCAGCTGTGGTGCTCCCATTCAAGTTTC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCATAGGGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCTACCACAGCTTGCTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCACTGCCCTCTGGGGCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGCTTGACACTGGGGAATCCAGCCAGTCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAACTCTCTAGAAATGTCATGATTGAGCTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCCCCCAAATTAAGGACCCATTTGTCTTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAGATTGATGGGCCTCCCCAAATCTAATT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCCAGATTCCCTTTTGAACACACATACCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTTCCCTGAGACCATGTTCTCCAC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTGGCCTCAATGGTCTTGAGTAGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTGAGGGTCCCAGAGCACACACCC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGACTTTTGTGAGGGATTTTAAAAACAAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAAAATGATTTTTGAAGTTTTTAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTTGAAGCTTTACAAGATCTGATTTTTTT  1998

Query    1  --------------------------ATG-----GGGGGCGGAGTGAGCGGTGAACACAC--TGAACAGAA---  38
                                      |||     |||||.|.|          |||||||  |||| |.||   
Sbjct 1999  CTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAA----------AACACACATTGAA-ATAAGAC  2061

Query   39  -------------TCTGA---------GAT----TTAATAAGCC--------AAA--------TCAACAATGTG  70
                         |.|||         |||    ||.|||   |        |||        |||  .|||| 
Sbjct 2062  CTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATA---CTGACTTTGAAATATTTTTGTCA--CATGT-  2129

Query   71  GGAAG--TTC-----------------GTTTTGTTTT-TTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGG  124
            |.|||  |||                 |||||.|||| ||.||.|||||||||||||||||||||||.||||||
Sbjct 2130  GAAAGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGCCCAGG  2203

Query  125  CTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGC  198
            |||.||||||.||||..||||||||||||||||||||||||||||.|.||||||||||||||||||||||||||
Sbjct 2204  CTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGC  2277

Query  199  CTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTT--------------  258
            ||.||.||||||||||||.|||||||||||||||||.|||||||||||||||||||||||              
Sbjct 2278  CTCCCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGG  2351

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2352  TTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAGTGCTG  2425

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2426  GGATTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCCCGTGC  2499

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2500  ACATTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTTACTGC  2573

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2574  CCAGATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCATAAACA  2647

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2648  GAAAGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTTTCAAA  2721

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2722  GGATGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAAAATGT  2795

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2796  TTTTTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAATTATT  2869

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2870  TTTTTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAATGCTAC  2943

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2944  GCTCTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACCTGCTG  3017

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3018  CCCGGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGCACTGT  3091

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3092  TCTTACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAAAATAG  3165

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3166  GAACTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCTACATG  3239

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3240  TATATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTACCTAT  3313

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3314  GATTTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAATGGAGC  3387

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3388  TATGAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTTTGAAA  3461

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3462  TTTTACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAACAGCAG  3535

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3536  TGGGCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGATGAGA  3609

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3610  AGTGGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCATTCTTA  3683

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3684  ATCTTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTGTGTCC  3757

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3758  AAAGCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGGTAGAA  3831

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3832  AAGTATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTAAGTTT  3905

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3906  ACTTCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCTTCCTA  3979

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3980  TGAAGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTTATCAT  4053

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4054  ACCAAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAGCACAT  4127

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4128  TCTTAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCTGGCTA  4201

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4202  ACGGATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAACATCT  4275

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4276  TTTGGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCACTTCTG  4349

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4350  TTTTACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTGGCTTA  4423

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4424  TGAGGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCAATTTT  4497

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4498  TAAAATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATAAAGTA  4571

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4572  CTTAAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATTTCTAA  4645

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4646  CTGGACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACACACTC  4719

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4720  TCTTTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTGGTTTT  4793

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4794  CATTCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTTTTCTT  4867

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4868  CAAACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTCTCGGC  4941

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4942  AGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTTTGAGA  5015

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5016  CCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGCGCAC  5089

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5090  CTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATTGAGCT  5163

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5164  GAGATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAGTTTCA  5237

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5238  CTGTGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCTCTAGG  5311

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5312  AAAGGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTTGAAGT  5385

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5386  ATGACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGCAGAAG  5459

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5460  GTGTAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCACTCAA  5533

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5534  GTGTGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCTAAATG  5607

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5608  ATCCAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTGGAGTG  5681

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5682  TGGCTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGAGCTTG  5755

Query  259  -----------------------------------------------------------------------  258
                                                                                   
Sbjct 5756  AACCATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACGAA  5826

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