Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13766
- Subject:
- NR_135758.2
- Aligned Length:
- 5897
- Identities:
- 220
- Gaps:
- 5656
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGATACCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACTCAAATAACATAGTTGTGGTTCCGGAAGCCATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAATGCCTTAGAAATTGTTTGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AACTGCAATTCCTACCTCCAGAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTAACTTTACCCGAGAGGCTTCACATGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGGCTTCTGTACTGCTGCACATGCTGTTCCCTCTGCTTGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGCTCATAACACATTTCCATTTATTCCAGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGATAAAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACTCAAGAACCTCAGGAGCGCTGCCAGCTTGACACTGGGGAATCCAGCCAGTCCAGCACACTCTTCCATCCTGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCTGTCCAATGCGGGGGCACTGCAGAACTCTCTAGAAATGTCATGATTGAGCTTCAGAGCTAAAATGCCTTCAC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCTTCCCCCAAGTTGGAATATATCCTCCCCCAAATTAAGGACCCATTTGTCTTCTGTGTTTTTCCTTTTTATGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAGTGTGTCTTTTACAGAAACCATTTAGATTGATGGGCCTCCCCAAATCTAATTTAAAGCAAGTTTCCGGTCCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGGAGAACAGTGACTTGATCATCTAGCCAGATTCCCTTTTGAACACACATACCTTCAGTGATGCTTCCTCTCCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTTCCCTGAGACCATGTTCTCCACAGTGTCTCCAGTGGAAACTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTGGCCTCAATGGTCTTGAGTAGCAGGGTGGGGCGCCTGAGTTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTGAGGGTCCCAGAGCACACACCCTCTGGAAAGTTCCAGCCTTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTATACGTTCTACAGTGTAGCAACAGACTTTTGTGAGGGATTTTAAAAACAAAAATGTAGATTGTAATGAAAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAAAATGATTTTTGAAGTTTTTAAATTTCCTGATAAGATTTTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTATATGAGAAGAATTTGAGGAATATTTGAAGCTTTACAAGATCTGATTTTTTTCTTTCTCAATATAAAGTTTC 2072
Query 1 ------ATG-----GGGGGCGGAGTGAGCGGTGAACACAC--TGAACAGAA----------------TCTGA-- 43
||| |||||.|.| ||||||| |||| |.|| |.|||
Sbjct 2073 CATACAATGAGAAAGGGGGAGAA----------AACACACATTGAA-ATAAGACCTCCGTGTTCTTTTTTGATG 2135
Query 44 -------GAT----TTAATAAGCC--------AAA--------TCAACAATGTGGGAAG--TTC---------- 78
||| ||.||| | ||| ||| .|||| |.||| |||
Sbjct 2136 GGTTTATGATTCAGTTTATA---CTGACTTTGAAATATTTTTGTCA--CATGT-GAAAGGCTTCAGCTACTTCC 2203
Query 79 -------GTTTTGTTTT-TTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGAT 144
|||||.|||| ||.||.|||||||||||||||||||||||.|||||||||.||||||.||||..|||
Sbjct 2204 ACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGAT 2277
Query 145 CTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTA 218
|||||||||||||||||||||||||.|.||||||||||||||||||||||||||||.||.||||||||||||.|
Sbjct 2278 CTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACCA 2351
Query 219 CAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTT---------------------------------- 258
||||||||||||||||.|||||||||||||||||||||||
Sbjct 2352 CAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCGGGA 2425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2426 TGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC 2499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2500 CGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCCCGTGCACATTTACTTCGTCACCTGG 2573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2574 TGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTTACTGCCCAGATGCAACTGAGAAAAT 2647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2648 ACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCATAAACAGAAAGTCTGTGAGCCTCCAC 2721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2722 CCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTTTCAAAGGATGGCATTTTAATGTTGC 2795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2796 TTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAAAATGTTTTTTAATGATGTAAGTTTT 2869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2870 CTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAATTATTTTTTTTTAATTTCAGACTTA 2943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 2944 TCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAATGCTACGCTCTTAACAGTGCCAAAAA 3017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3018 TCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACCTGCTGCCCGGAAAGCACACCGTCCA 3091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3092 CGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGCACTGTTCTTACTTCCTCTTGTCCCT 3165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3166 TTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAAAATAGGAACTGAAGATCTGTATCAA 3239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3240 AATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCTACATGTATATAAGTTAGCTGGTGAA 3313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3314 AATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTACCTATGATTTAAGTGACAGTAAATG 3387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3388 TCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAATGGAGCTATGAAATGTGCTAACTTGG 3461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3462 TATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTTTGAAATTTTACAAAAATGCTTACAA 3535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3536 TCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAACAGCAGTGGGCTGGGCAGACAACCTT 3609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3610 TGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGATGAGAAGTGGAACTTAAGTGGTTTC 3683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3684 CCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCATTCTTAATCTTTTGATACTATAAAGG 3757
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3758 AGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTGTGTCCAAAGCTTTGCAGAAAAGCAA 3831
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3832 ATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGGTAGAAAAGTATTCACACAATAATAG 3905
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3906 TAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTAAGTTTACTTCAGTGAACTCTTGTGT 3979
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3980 GGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCTTCCTATGAAGTAGTGCAAAGGGGGC 4053
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4054 CGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTTATCATACCAAAAACCTTAATTACAT 4127
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4128 AACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAGCACATTCTTAAAATACATAATAATT 4201
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4202 AAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCTGGCTAACGGATAAGAGTGATGAACT 4275
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4276 TCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAACATCTTTTGGTCACCGTGCCTCACT 4349
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4350 AAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCACTTCTGTTTTACGTTGAGCATTACGA 4423
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4424 ATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTGGCTTATGAGGCTCTGCATATAATTT 4497
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4498 TCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCAATTTTTAAAATTAGTAGTAGTAAAG 4571
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4572 GTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATAAAGTACTTAAACACAATACATTGCC 4645
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4646 TCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATTTCTAACTGGACCAACACTAATGTTG 4719
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4720 CAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACACACTCTCTTTAAGACTCTTCTTTAA 4793
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4794 ATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTGGTTTTCATTCACTCCTGCTTGCTTC 4867
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4868 TATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTTTTCTTCAAACAAAGGGGGTTTTTAT 4941
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4942 AAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTCTCGGCAGTGGCTCATGCCTATAATC 5015
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5016 CCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAGCATGGTG 5089
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5090 AAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGCGCACCTGCAGTCCCAGCTACTCGG 5163
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5164 GAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATTGAGCTGAGATCACGCCATTACACTC 5237
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5238 CAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAGTTTCACTGTGCCTACAGTGAGGAGC 5311
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5312 TACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCTCTAGGAAAGGAATTGATCATAGCCA 5385
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5386 AGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTTGAAGTATGACTGTATGTGTGGTCCC 5459
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5460 CTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGCAGAAGGTGTAGCATTCGGAGATTAT 5533
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5534 TTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCACTCAAGTGTGGATTATCTTTGCTAC 5607
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5608 CTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCTAAATGATCCAAGATTTTTAAAATAG 5681
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5682 ATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTGGAGTGTGGCTAAAAACTCATACTTT 5755
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5756 ATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGAGCTTGAACCATGTGAATGCTCAGAA 5829
Query 259 --------------------------------------------------- 258
Sbjct 5830 TGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACGAA 5880
