Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13766
Subject:
XR_001744515.1
Aligned Length:
5880
Identities:
222
Gaps:
5637

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGCAGTGATTACATCCAAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGTACATTACCTGATAAATATAAATATATCCAGACACTCCGGGAGAGCAGGGAACGTGCTCAGTCACTTTCAAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTATCAAGAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATATAATATT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCTTGTCAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGGTCACTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTGTGGAAGATGCTGGCATCACAATCATTGGTGAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAACAATAGATAAAGCCAAGGAAGTGGGAGCCAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCTGAACATTCAAACAATCCATTGAGATATAAAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTCTGCCACCTATCTGCTCGATGGAAAGGTTGTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCATGGATTTTTTTCCAGGATTAAATTTGGAAGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGCATTTCTTCTGCTCACACTTTGTTGCGGGGGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CACTGAGATATAAGGGATTGGAATGCTGAATAATGGATTGGAATGTTGAATAATGTTGAATACCTTCCTATGGT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATCCTCCCTAACTCCTTCCCCTTGAACCACCCAGCCCCATCTATGGATATATGAAAGCTTTGAATGGATTTGTA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAAACAACT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGACAGCTT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGGAATCAGACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTGGCTTATGGGGACATCAATGGCT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTTCAGCCATGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAAATTGGA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GCCAAAGGCCTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGAAGGCAT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TATATATACTACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGCAATACA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CCTCTGAACATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTTTTGGTT  3034

Query    1  ----------------------------------------ATGG--------GGGGC-GGAG-TG--AGCGGTG  22
                                                    ||||        ||..| |||| ||  |||    
Sbjct 3035  AACACAATGTACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAAGC----  3104

Query   23  AACACACTGAACAGAATCTGAGATTTAATAAGCCAA-----------ATCAACA---ATGTGGGAAG-------  75
                |||| ||||||    ||..||||||||..|.|           ||.||.|   |||| |.|||       
Sbjct 3105  ----CACT-AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGTGATGAT  3168

Query   76  ---------------------------------TTCGTTTTGTTTTTT--------------TTTTTTGAGACG  102
                                             ||| |||||||||||              ||||||||||.|
Sbjct 3169  CATGCTATTTGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTTGAGATG  3241

Query  103  GAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTT  176
            |||||||||||||||||||||||||.||||||.||||.|||||||||||||||||||||||||||||...||||
Sbjct 3242  GAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTT  3315

Query  177  CACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT-AATTTT  249
            ||||||||||||||||||||||||.||.|||||||||||||||||||.||||||||||.|||||||| ||||||
Sbjct 3316  CACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAAATTTT  3389

Query  250  TTGTATTTT-----------------------------------------------------------------  258
            |||||||||                                                                 
Sbjct 3390  TTGTATTTTTCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAACATATTG  3463

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3464  TCTTATAACCAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTTATATTT  3537

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3538  TTAAAATTGATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATGCCCTTT  3611

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3612  TTGTAAAGTTATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAGAATAGA  3685

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3686  TAAGATTAAATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACACCCTTT  3759

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3760  CACAATAAAAAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGATAAAGG  3833

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3834  GCATCTATGAAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGATCAGAA  3907

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3908  ACAAGACAAGGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATTAGGCAA  3981

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3982  GAAAATAAAATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATATGGTGG  4055

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4056  TTTTGTGCATAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATTTATTAATAAATAAATTCAGCAA  4129

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4130  AGTTACAGGATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAGTATCAATGAATAAATCAAAAAT  4203

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4204  GATGTTAAGAAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACACTTTGG  4277

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4278  GAGTCTGAGGCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTACAAAAA  4351

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4352  CAAACAAACAAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAGCTACTC  4425

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4426  AGAGGCTGAGGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCACTGCAAT  4499

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4500  CCAGCCTGGATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGCATCAGA  4573

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4574  AAGAGTAAAATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTATCATCAACTGACTTTTGAAAATA  4647

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4648  GTGCTAAGACAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCTTGGAAACATGGATATCCACATG  4721

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4722  CAAAATAATGAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATCTAAATG  4795

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4796  TAAGAGCTAATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCAATGATT  4869

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4870  TCTTAAATAAATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCATTTGTG  4943

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4944  TTTCCAAGGACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAATTTTTTTTAAAATCATGTATTA  5017

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5018  GTTAAGGGAGGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAATTAAAAGGCATATAATTCAATT  5091

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5092  TTTAAAAATCAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCACATGAAA  5165

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5166  AGGTTCTCAACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGAGATATCACTTAACACTCACTGG  5239

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5240  AATAGATATATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATGCACTGT  5313

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5314  TGGTGGATACCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAGCATTAT  5387

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5388  TTATAATAGCCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGCATATCC  5461

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5462  ATACAAGGAATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCACCACAACATGGAAAAACCTTGA  5535

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5536  AAACATATCAAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATTTCATTTATATGAAATGTCCAGA  5609

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5610  ACAGGCGAATATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAAGGGGTG  5683

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5684  ACTGCTAATTAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGGTGGCAC  5757

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5758  AACTCTGAATATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATTTTATCT  5831

Query  259  ----------------------------------  258
                                              
Sbjct 5832  CAAGTTGTTATAAAAAATTAAATTACAAATGCAA  5865

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