Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13795
Subject:
NM_001190241.2
Aligned Length:
2855
Identities:
1906
Gaps:
946

Alignment

Query    1  ATGCACAATTTTGAGGAAGAGTTAACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTCTCATACATTTTGTAGAAATTGTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TACGAATTCCACTCAAGTGCCCTAATTGCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GTTAATTTTGCACTAAGGGCTATTATTGAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ACATTACAGGCAACCATTAAATGTTTACTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GTCAACATCATGGTCATCCTATAGATGACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTG  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CTTGAACAGTTGACTGACACACACTGGACAGATCTTACCCATCTTATTGAAAAGCCGAAAGAACAAAAATCTCA  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TTCTGAGAAAATGATCCAAGGCGATAAGGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAAC  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AGAAAAAAAAAAGTTTCCTAACGGCTCTCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GAAAGAATGAAGGAAATACGAGAGCAGCAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCC  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  ACTTAAATTTCTTGAAAAAGTTGATGATGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGG  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  TTCAACCCGTTGAAATTTATCCTCGAGTAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAA  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  ATTAAGAACGTTCTCATTCCCAAAATG-------AAAATTT--CTC--CAAAAAGGATGTCATGTTCCTGGCCT  951
                                    |||       .||.|||  |||  |||                       
Sbjct    1  ------------------------ATGCTTAGATCAACTTTAGCTCAGCAA-----------------------  27

Query  952  GGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAAT  1025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   28  GGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAAT  101

Query 1026  CATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAAGCTCATGATGGCATTATTTTAAAAGTAGATT  1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  102  CATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAAGCTCATGATGGCATTATTTTAAAAGTAGATT  175

Query 1100  GGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTGTAAATATAAGGTATGGGATAGTTACGGCCGC  1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  GGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTGTAAATATAAGGTATGGGATAGTTACGGCCGC  249

Query 1174  CCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGC  1247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  250  CCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGC  323

Query 1248  TGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGGTGGTCATATGCATTAGAAAAACCCAACACTG  1321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  TGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGGTGGTCATATGCATTAGAAAAACCCAACACTG  397

Query 1322  GCAGCATATTTAATATTGCATGGTCTATCGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTT  1395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  398  GCAGCATATTTAATATTGCATGGTCTATCGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTT  471

Query 1396  TTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTCAAGTAACATTAACGAAAAGAAGAGCCATGCA  1469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  TTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTCAAGTAACATTAACGAAAAGAAGAGCCATGCA  545

Query 1470  GGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAAAGCATCTTTGAACT  1543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  546  GGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAAAGCATCTTTGAACT  619

Query 1544  ATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTTCTCCACGAAGAACTGGAACACACCAATTATA  1617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  620  ATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTTCTCCACGAAGAACTGGAACACACCAATTATA  693

Query 1618  TTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAG  1691
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  694  TTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAG  767

Query 1692  TATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCAAAATTTCCTGGAATGAGAACAGATATTCTGA  1765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  768  TATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCAAAATTTCCTGGAATGAGAACAGATATTCTGA  841

Query 1766  ATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAGAGACAAAGCTGATGAAAAAATAATCTTCCTC  1839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  842  ATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAGAGACAAAGCTGATGAAAAAATAATCTTCCTC  915

Query 1840  TTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTCTTTCTCATAAGAATGAAATCTTGGAAATTGC  1913
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  916  TTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTCTTTCTCATAAGAATGAAATCTTGGAAATTGC  989

Query 1914  TCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGATCTCTGTATCACTT  1987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  990  TCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGATCTCTGTATCACTT  1063

Query 1988  CTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGGAACAATGGTGCATACTTTGGCATGGAACGAT  2061
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064  CTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGGAACAATGGTGCATACTTTGGCATGGAACGAT  1137

Query 2062  ACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAGTGTGGTATTACCCCAATACAGTTTATGTGGA  2135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138  ACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAGTGTGGTATTACCCCAATACAGTTTATGTGGA  1211

Query 2136  CAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTTAGTAAAAATCCCCATATTGTGAGTT  2209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212  CAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTTAGTAAAAATCCCCATATTGTGAGTT  1285

Query 2210  TTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCTGGTTCACATCAGCATAACACCATATCCTGCT  2283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286  TTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCTGGTTCACATCAGCATAACACCATATCCTGCT  1359

Query 2284  ATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAAC  2357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360  ATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAAC  1433

Query 2358  CATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGATATGACTACTGCAGAAGTAGCCTATGCAGCAA  2431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1434  CATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGATATGACTACTGCAGAAATAGCCTATGCAGCAA  1507

Query 2432  TTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTAAAGAATCAAAAATGGCCCAC  2505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508  TTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTAAAGAATCAAAAATGGCCCAC  1581

Query 2506  ATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAAT  2579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582  ATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAAT  1655

Query 2580  CCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAATTGGCTGTAAAATACAAAACACATGTTGATA  2653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656  CCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAATTGGCTGTAAAATACAAAACACATGTTGATA  1729

Query 2654  CAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAACGATACTTGCATTAT  2727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730  CAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAACGATACTTGCATTAT  1803

Query 2728  GCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCA  2801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804  GCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCA  1877

Query 2802  ATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCC  2844
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878  ATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCC  1920

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.