Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13795
Subject:
NR_148401.1
Aligned Length:
3384
Identities:
2842
Gaps:
540

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCACCTGAAGCCCTTCGGGGCAGAGGAGGGCGGGGACTCGGGGCGGCTCTCAGCATCCGCCTGGAGCTCGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCTGTGTTTCCGTGCTGTGGAGTTGCCTGGTCCGCTTCCTCCCCGCGAATAAGAATAAAAGATTCTGGAGGAG  148

Query    1  -----------------------------------------------ATGCACAATTTTGAGGAAGAGTTAACT  27
                                                           |||||||||||||||||||||||||||
Sbjct  149  TTGGAGAAGAGTGTATTCAGCCCCCAAACCACGAGATCAACAAAGAAATGCACAATTTTGAGGAAGAGTTAACT  222

Query   28  TGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATTGTTT  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATTGTTT  296

Query  102  GGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCTAATT  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCTAATT  370

Query  176  GCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATT  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATT  444

Query  250  GAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTA  323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTA  518

Query  324  CTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATG  397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATG  592

Query  398  ACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGG  471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGG  666

Query  472  ACAGATCTTACCCATCTTATTGAAAAGCCGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAA  545
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAA  740

Query  546  GGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTC  619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTC  814

Query  620  TCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGAGCAG  693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGAGCAG  888

Query  694  CAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGA  767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGA  962

Query  768  TGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG  841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG  1036

Query  842  TAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATG  915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATG  1110

Query  916  AAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTC  989
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTC  1184

Query  990  AGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGT  1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGT  1258

Query 1064  GGAAAGCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAA  1137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GGAAAGCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAA  1332

Query 1138  GACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTAC  1211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTAC  1406

Query 1212  TTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAA  1285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAA  1480

Query 1286  CTGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACT  1359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CTGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACT  1554

Query 1360  CAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAA  1433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAA  1628

Query 1434  TTTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGG  1507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TTTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGG  1702

Query 1508  AATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTAC  1581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTAC  1776

Query 1582  GTGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCA  1655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GTGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCA  1850

Query 1656  GGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCAT  1729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCAT  1924

Query 1730  CTCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCA  1803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CTCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCA  1998

Query 1804  ATAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAA  1877
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  ATAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAA  2072

Query 1878  GTTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTG  1951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GTTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTG  2146

Query 1952  CTTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAG  2025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  CTTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAG  2220

Query 2026  CTTGGAACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATT  2099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CTTGGAACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATT  2294

Query 2100  TATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATG  2173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  TATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATG  2368

Query 2174  CAAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGC  2247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CAAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGC  2442

Query 2248  TCCCTGGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGA  2321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  TCCCTGGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGA  2516

Query 2322  TGCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATC  2395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TGCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATC  2590

Query 2396  GAGATATGACTACTGCAGAAGTAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATA  2469
            ||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  GAGATATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATA  2664

Query 2470  AAAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAAT  2543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  AAAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAAT  2738

Query 2544  AGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCAC  2617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  AGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCAC  2812

Query 2618  TGGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTT  2691
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  TGGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTT  2886

Query 2692  GGTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGC  2765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  GGTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGC  2960

Query 2766  CAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAA  2839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  CAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAA  3034

Query 2840  AGCCC---------------------------------------------------------------------  2844
            |||||                                                                     
Sbjct 3035  AGCCCTAAATGCCATGCGTATCTTTAAGAAATTTTATCTTTTGAAACACGTTCTGATTAACCAAGGGGCGTGTC  3108

Query 2845  --------------------------------------------------------------------------  2844
                                                                                      
Sbjct 3109  ACAGAACAGGAAACTGATACAATGACACTTGTTTCTTAAGAGAAGCTGATTGAATCCTGTAGCACATTACTGCA  3182

Query 2845  --------------------------------------------------------------------------  2844
                                                                                      
Sbjct 3183  CAATTAATGGCTTTAAACGAGTTACAAGTCGTAAGTTCTTATGTTTTGGATCATGTTGTGGAATGTATTCCAAA  3256

Query 2845  --------------------------------------------------------------------------  2844
                                                                                      
Sbjct 3257  TGAAAAATGGAGGAGAAAGTGCACAACATCATATGCTTCATGGTATGGCATATACATGTCAATTATTTTTACAT  3330

Query 2845  ------------------------------------------------------  2844
                                                                  
Sbjct 3331  ATAACTGTGATGAATGATACAATTAAAAGCTATACTACAAAAAAAAAAAAAAAA  3384

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