Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13795
- Subject:
- XM_017319702.1
- Aligned Length:
- 2890
- Identities:
- 1911
- Gaps:
- 680
Alignment
Query 1 ATGCACAATTTTGAGGAAGAGTTAACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATG 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CTCTCATACATTTTGTAGAAATTGTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTT 148
|| ||||| |
Sbjct 1 ---------------------------------------------------------------AT-GAGAC--T 8
Query 149 TACGA-ATTCCACTC-AAGTGCCCTAATTGCA-GAAGTATTACTGAAAT-TGCTCCAACTGGCATTGAATCTTT 218
.|.|| ||..|.||| |||...||.|| ||| .|||.||||.|||..| || |||
Sbjct 9 GAAGATATCTCTCTCAAAGGAACCAAA--GCATCAAGAATTAGTGAGCTGTG-------TGG------------ 61
Query 219 ACCTGTTAATTTTGCACTAAGG-------GCTATTATTGAAAAGTAC-CA-GCA-AGAAGACCATCCAGAT--- 279
.|||.||||.|| ||| |||| || ||| .||.||||| ||||||
Sbjct 62 ----------GTTGGACTACGGCGGAGGAGCT-----------GTACTCATGCAGTGACGACCA-CCAGATCGT 113
Query 280 --ATTGTCACCTGCCCTGAACATTACAG-GCAACCATTAAATGTTTACTGTCTATTAGATAAAAAATTAGTTTG 350
|.||..|||||| .||| ||| |.||||| |.|||.||
Sbjct 114 CAAGTGGAACCTGC---TAAC----CAGTGAAACCA-------------GCCTAATA----------------- 150
Query 351 TGGTCA--TTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATGACCTTCAAAGTGCCTATTTGAAAGA 422
|||| .||||| |...||||| .|.||.||| |||||||
Sbjct 151 --GTCAAGCTGCCT--------GATGACATC-----TACCCGATA---GACCTTC------------------- 187
Query 423 AAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGGACAGATCTTACCCATCTTATTGAAA 496
||||.|| |..|.|||..|||..|||
Sbjct 188 ------------------ACTGGTT---------------------TCCAAAGAGTTTAGGCAT---------- 212
Query 497 AGCCGAAAG-AACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAAGGAAGCT--GTTCTC-CAGTATTT 566
|||| ||||.| |..|||| ||.||||| ||.||| ||
Sbjct 213 -----AAAGAAACAGA----------------------CGCAGGC----AGAAAGCTTCGTCCTCACA------ 249
Query 567 TAAGGAGCT-TAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTCTCTGTGATGTTGGCAATCTA 639
|||| |.|||.| ||||||| ||||.
Sbjct 250 -----AGCTCTGATGGT--------------------AAGTTTC-------------------------ATCTG 273
Query 640 ATTAATCAAGAATATACTCCACAAATT-GAAAGAATGAAGGAAATACGAGAGCAGCAGCTTGAATTAATGGCAC 712
||| || |||.|| |.||||.| |||| |.|||.|.||.|||| |||
Sbjct 274 ATT--TC--------------CAAGTTAGGAAGAGT---GGAA--AAGAGTGTAGAAGCT-----------CAC 315
Query 713 TGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGATGTACGC-CAGCATGTACA 785
|| ||..|.|||.|.| |||.|
Sbjct 316 TG-----------------------------------------------TGGGGCTGTGCTCGCAGGA------ 336
Query 786 GATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG-----TAAGCAAAATATT 854
||.||.|| |||| ||| | || |.||.|
Sbjct 337 ------------------------------------CGATGGAA-TTAT----GAGGGGACT--GC--ATTAGT 365
Query 855 GAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATGAAAATTTCTCCAA 928
||.|| .|||||.||| ||||| ||.|||||||.|...|||
Sbjct 366 GACAG----TTGGAGAAGA--------TGGAC------------------------AAGTGAAAATCTGGTCAA 403
Query 929 A---AAGGATG------TCATGTT---CCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCA 990
| |.||||| |||..|| ||..||..||||||||||||||.||||||||.|||||||||||||||
Sbjct 404 AGACAGGGATGCTCAGATCAACTTTAGCCCAGCAAGGAACACCAGTGTACTCAGTAGCCTGGGGCCCTGATTCA 477
Query 991 GAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTG 1064
||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct 478 GAAAAGGTTCTTTATACAGCAGGCAAACAGCTCATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTACAGTG 551
Query 1065 GAAAGCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAG 1138
||||||.|||||||||||.|||||||||||.||.||||||||.||.|||||.||||||||||||||.|||||||
Sbjct 552 GAAAGCCCATGATGGCATCATTTTAAAAGTCGACTGGAACTCAGTGAATGACCTTATTTTATCTGCGGGTGAAG 625
Query 1139 ACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACT 1212
|||||||.||||||||.|||||||||||.||||||...||||||...||.||.|||||||||||.|||||.||.
Sbjct 626 ACTGTAAGTATAAGGTTTGGGATAGTTATGGCCGCGTGCTGTACGGCTCCCAGCCTCATGAGCACCCCATCACC 699
Query 1213 TCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAAC 1286
|||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.||||||||||||||||||||
Sbjct 700 TCAGTGGCCTGGGCTCCAGATGGGGAGTTATTTGCCGTTGGATCGTTTCATACGTTACGCTTGTGTGATAAAAC 773
Query 1287 TGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTC 1360
|||||||||||||||.|||||.||||||||||||||||||||||||||.|||||.||||||||.||||||||||
Sbjct 774 TGGGTGGTCATATGCTTTAGAGAAACCCAACACTGGCAGCATATTTAACATTGCGTGGTCTATTGATGGCACTC 847
Query 1361 AGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAAT 1434
||||.||.|||||||||||.||.||.|||||.||.|||||||||||||||||.||.|..|||||||||||||||
Sbjct 848 AGATCGCGGGAGCCTGTGGGAACGGGCATGTTGTCTTTGCACATGTGGTGGAGCAGCGCTGGGAGTGGAAAAAT 921
Query 1435 TTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGA 1508
|||||||||||..|||||||.|||||..|||||||||||||.||.|||||.||||||||.||||||.|.|||||
Sbjct 922 TTTCAAGTAACGCTAACGAAGAGAAGGACCATGCAGGTTCGCAACGTTCTCAATGATGCCGTGGATCTCCTGGA 995
Query 1509 ATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACG 1582
.|||||.||.|||||||||||||||||.||.|||.|.||||||||.||.||.||.|||||.||.||.||.||||
Sbjct 996 GTTCCGGGACAGAGTCATTAAAGCATCCTTAAACCACGCACACTTGGTGGTCTCCACGTCCCTGCAGTGCTACG 1069
Query 1583 TGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAG 1656
|||||||
Sbjct 1070 TGTTCTC------------------------------------------------------------------- 1076
Query 1657 GCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATC 1730
||||||||||||.||.|||||..|..|||||||..|..|.||.||||||||||||||.|||||.||
Sbjct 1077 --------ACATTTTCTTCTGGTGGATGGCGGGGGTATCTACCTGCACTCTTATGAAGGGCGCTTCATTTCTTC 1142
Query 1731 TCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAA 1804
||||||.||||||||.|||||||||||.||.|||||.||.||||||||||||.||||.|||||.||.|||||||
Sbjct 1143 TCCAAAGTTTCCTGGCATGAGAACAGACATCCTGAACGCTCAGACTGTGTCTCTGAGCAATGACACGATAGCAA 1216
Query 1805 TAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAG 1878
|||..|||||||||||.||.||.||||||||||||||||||||.|||||.|||||.||..||||.|||||.||.
Sbjct 1217 TAAAGGACAAAGCTGACGAGAAGATAATCTTCCTCTTTGAGGCGTCAACTGGAAAACCCCTAGGGGATGGGAAA 1290
Query 1879 TTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGC 1952
.||||||||||||||||||||||||..|||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1291 CTTCTTTCTCATAAGAATGAAATCTCAGAAATTGCTCTGGATCAAAAAGGACTTACCAATGACAGAAAAATTGC 1364
Query 1953 TTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGC 2026
|||||||||.||.||.||||||||||..|||||.||||||||||||||||||||.||||||||.|||||.||.|
Sbjct 1365 TTTCATTGACAAGAACAGAGATCTCTACATCACCTCTGTGAAACGATTTGGGAAAGAAGAACAGATTATTAAAC 1438
Query 2027 TTGGAACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTT 2100
|||||||.|||||.|||||||||||||||...|||||||||||||||||.||||||.||||||||||||||||.
Sbjct 1439 TTGGAACCATGGTACATACTTTGGCATGGTGTGATACATGCAATATCCTCTGTGGAATTCAAGATACTCGATTC 1512
Query 2101 ATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGC 2174
|.|||.|||||||||||.|||||..||||||||||||||||||||.|||||||||||||.||.|||||.|||||
Sbjct 1513 ACAGTATGGTATTACCCTAATACCATTTATGTGGACAGAGACATTCTGCCTAAAACATTGTACGAAAGAGATGC 1586
Query 2175 AAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCT 2248
||||||||.|||||||||.||.|||||.||||||||||||||||||||.||||||||.||||||||||||||||
Sbjct 1587 AAGTGAATATAGTAAAAACCCGCATATAGTGAGTTTTGTTGGAAATCAGGTAACTATAAGAAGAGCTGATGGCT 1660
Query 2249 CCCTGGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGAT 2322
|||||||.||||||||||||.||||.||.||.||.||.||||||||.|||||.|||||.||.||.||||||||.
Sbjct 1661 CCCTGGTGCACATCAGCATATCACCGTACCCCGCCATCCTCCATGAGTATGTGAGCAGCTCCAAGTGGGAAGAG 1734
Query 2323 GCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCG 2396
|||||.||.|||||.|||||||||||||||||||.||||||||||||.|||||.||||||||.|||||||||||
Sbjct 1735 GCTGTAAGGCTTTGCCGCTTTGTTAAGGAGCAAAGCATGTGGGCTTGCCTAGCGGCTATGGCTGTTGCTAATCG 1808
Query 2397 AGATATGACTACTGCAGAAGTAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAA 2470
|||||||...|||||||||.||||||||||||||.||||.|||||||||||.||||.||||||||||.||||||
Sbjct 1809 AGATATGGTCACTGCAGAAATAGCCTATGCAGCAGTTGGGGAAATTGATAAAGTTCGGTACATCAATGCTATAA 1882
Query 2471 AAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATA 2544
||.||||||||||||.|||.||||||||||||||||||||..||||||||||||||||.|||||||||||||.|
Sbjct 1883 AAGATCTTCCATCTAGAGAGTCAAAAATGGCCCACATACTCATGTTTAGTGGGAACATCCAGGAGGCTGAAACA 1956
Query 2545 GTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACT 2618
||.||.||.|||||||||||||||||||||||.||.||||||||.|||||||||||.||||||||||||||.||
Sbjct 1957 GTCCTGCTCCAGGCTGGCCTTGTTTATCAAGCCATACAGATCAACATTAATCTCTATAACTGGGAAAGGGCGCT 2030
Query 2619 GGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTG 2692
|||.||||||||||||||||||||.||.|||||||||||.||.|||||.|||||.|||||.|||||.|||||||
Sbjct 2031 GGAGTTGGCTGTAAAATACAAAACCCACGTTGATACAGTGCTCGCTTATCGTCAGAAGTTCTTGGACACATTTG 2104
Query 2693 GTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCC 2766
|||||||||||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||
Sbjct 2105 GTAAACAGGAAACTAATAAACGATATTTACAATATGCAGAGGGCCTCCAAATAGACTGGGAGAAAATCAAAGCC 2178
Query 2767 AAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAA 2840
||||||||||||||||||||.||||||.||||.|.||||||.|||.||||.||||||||||||.|.||.|||||
Sbjct 2179 AAAATTGAGATGGAAATTACTAAAGAACGAGACCGATCATCCAGCGGCCAGTCCAGCAAGAGTGTGGGCTTAAA 2252
Query 2841 GCCC 2844
||.|
Sbjct 2253 GCAC 2256
