Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13795
Subject:
XM_017319702.1
Aligned Length:
2890
Identities:
1911
Gaps:
680

Alignment

Query    1  ATGCACAATTTTGAGGAAGAGTTAACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTCTCATACATTTTGTAGAAATTGTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTT  148
                                                                           || |||||  |
Sbjct    1  ---------------------------------------------------------------AT-GAGAC--T  8

Query  149  TACGA-ATTCCACTC-AAGTGCCCTAATTGCA-GAAGTATTACTGAAAT-TGCTCCAACTGGCATTGAATCTTT  218
            .|.|| ||..|.||| |||...||.||  ||| .|||.||||.|||..| ||       |||            
Sbjct    9  GAAGATATCTCTCTCAAAGGAACCAAA--GCATCAAGAATTAGTGAGCTGTG-------TGG------------  61

Query  219  ACCTGTTAATTTTGCACTAAGG-------GCTATTATTGAAAAGTAC-CA-GCA-AGAAGACCATCCAGAT---  279
                      .|||.||||.||       |||           |||| || ||| .||.||||| ||||||   
Sbjct   62  ----------GTTGGACTACGGCGGAGGAGCT-----------GTACTCATGCAGTGACGACCA-CCAGATCGT  113

Query  280  --ATTGTCACCTGCCCTGAACATTACAG-GCAACCATTAAATGTTTACTGTCTATTAGATAAAAAATTAGTTTG  350
              |.||..||||||   .|||    ||| |.|||||             |.|||.||                 
Sbjct  114  CAAGTGGAACCTGC---TAAC----CAGTGAAACCA-------------GCCTAATA-----------------  150

Query  351  TGGTCA--TTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATGACCTTCAAAGTGCCTATTTGAAAGA  422
              ||||  .|||||        |...|||||     .|.||.|||   |||||||                   
Sbjct  151  --GTCAAGCTGCCT--------GATGACATC-----TACCCGATA---GACCTTC-------------------  187

Query  423  AAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGGACAGATCTTACCCATCTTATTGAAA  496
                              ||||.||                     |..|.|||..|||..|||          
Sbjct  188  ------------------ACTGGTT---------------------TCCAAAGAGTTTAGGCAT----------  212

Query  497  AGCCGAAAG-AACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAAGGAAGCT--GTTCTC-CAGTATTT  566
                 |||| ||||.|                      |..||||    ||.|||||  ||.||| ||      
Sbjct  213  -----AAAGAAACAGA----------------------CGCAGGC----AGAAAGCTTCGTCCTCACA------  249

Query  567  TAAGGAGCT-TAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTCTCTGTGATGTTGGCAATCTA  639
                 |||| |.|||.|                    |||||||                         ||||.
Sbjct  250  -----AGCTCTGATGGT--------------------AAGTTTC-------------------------ATCTG  273

Query  640  ATTAATCAAGAATATACTCCACAAATT-GAAAGAATGAAGGAAATACGAGAGCAGCAGCTTGAATTAATGGCAC  712
            |||  ||              |||.|| |.||||.|   ||||  |.|||.|.||.||||           |||
Sbjct  274  ATT--TC--------------CAAGTTAGGAAGAGT---GGAA--AAGAGTGTAGAAGCT-----------CAC  315

Query  713  TGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGATGTACGC-CAGCATGTACA  785
            ||                                               ||..|.|||.|.| |||.|      
Sbjct  316  TG-----------------------------------------------TGGGGCTGTGCTCGCAGGA------  336

Query  786  GATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG-----TAAGCAAAATATT  854
                                                ||.||.|| ||||    |||     |  ||  |.||.|
Sbjct  337  ------------------------------------CGATGGAA-TTAT----GAGGGGACT--GC--ATTAGT  365

Query  855  GAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATGAAAATTTCTCCAA  928
            ||.||    .|||||.|||        |||||                        ||.|||||||.|...|||
Sbjct  366  GACAG----TTGGAGAAGA--------TGGAC------------------------AAGTGAAAATCTGGTCAA  403

Query  929  A---AAGGATG------TCATGTT---CCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCA  990
            |   |.|||||      |||..||   ||..||..||||||||||||||.||||||||.|||||||||||||||
Sbjct  404  AGACAGGGATGCTCAGATCAACTTTAGCCCAGCAAGGAACACCAGTGTACTCAGTAGCCTGGGGCCCTGATTCA  477

Query  991  GAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTG  1064
            ||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct  478  GAAAAGGTTCTTTATACAGCAGGCAAACAGCTCATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTACAGTG  551

Query 1065  GAAAGCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAG  1138
            ||||||.|||||||||||.|||||||||||.||.||||||||.||.|||||.||||||||||||||.|||||||
Sbjct  552  GAAAGCCCATGATGGCATCATTTTAAAAGTCGACTGGAACTCAGTGAATGACCTTATTTTATCTGCGGGTGAAG  625

Query 1139  ACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACT  1212
            |||||||.||||||||.|||||||||||.||||||...||||||...||.||.|||||||||||.|||||.||.
Sbjct  626  ACTGTAAGTATAAGGTTTGGGATAGTTATGGCCGCGTGCTGTACGGCTCCCAGCCTCATGAGCACCCCATCACC  699

Query 1213  TCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAAC  1286
            |||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.||||||||||||||||||||
Sbjct  700  TCAGTGGCCTGGGCTCCAGATGGGGAGTTATTTGCCGTTGGATCGTTTCATACGTTACGCTTGTGTGATAAAAC  773

Query 1287  TGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTC  1360
            |||||||||||||||.|||||.||||||||||||||||||||||||||.|||||.||||||||.||||||||||
Sbjct  774  TGGGTGGTCATATGCTTTAGAGAAACCCAACACTGGCAGCATATTTAACATTGCGTGGTCTATTGATGGCACTC  847

Query 1361  AGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAAT  1434
            ||||.||.|||||||||||.||.||.|||||.||.|||||||||||||||||.||.|..|||||||||||||||
Sbjct  848  AGATCGCGGGAGCCTGTGGGAACGGGCATGTTGTCTTTGCACATGTGGTGGAGCAGCGCTGGGAGTGGAAAAAT  921

Query 1435  TTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGA  1508
            |||||||||||..|||||||.|||||..|||||||||||||.||.|||||.||||||||.||||||.|.|||||
Sbjct  922  TTTCAAGTAACGCTAACGAAGAGAAGGACCATGCAGGTTCGCAACGTTCTCAATGATGCCGTGGATCTCCTGGA  995

Query 1509  ATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACG  1582
            .|||||.||.|||||||||||||||||.||.|||.|.||||||||.||.||.||.|||||.||.||.||.||||
Sbjct  996  GTTCCGGGACAGAGTCATTAAAGCATCCTTAAACCACGCACACTTGGTGGTCTCCACGTCCCTGCAGTGCTACG  1069

Query 1583  TGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAG  1656
            |||||||                                                                   
Sbjct 1070  TGTTCTC-------------------------------------------------------------------  1076

Query 1657  GCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATC  1730
                    ||||||||||||.||.|||||..|..|||||||..|..|.||.||||||||||||||.|||||.||
Sbjct 1077  --------ACATTTTCTTCTGGTGGATGGCGGGGGTATCTACCTGCACTCTTATGAAGGGCGCTTCATTTCTTC  1142

Query 1731  TCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAA  1804
            ||||||.||||||||.|||||||||||.||.|||||.||.||||||||||||.||||.|||||.||.|||||||
Sbjct 1143  TCCAAAGTTTCCTGGCATGAGAACAGACATCCTGAACGCTCAGACTGTGTCTCTGAGCAATGACACGATAGCAA  1216

Query 1805  TAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAG  1878
            |||..|||||||||||.||.||.||||||||||||||||||||.|||||.|||||.||..||||.|||||.||.
Sbjct 1217  TAAAGGACAAAGCTGACGAGAAGATAATCTTCCTCTTTGAGGCGTCAACTGGAAAACCCCTAGGGGATGGGAAA  1290

Query 1879  TTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGC  1952
            .||||||||||||||||||||||||..|||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1291  CTTCTTTCTCATAAGAATGAAATCTCAGAAATTGCTCTGGATCAAAAAGGACTTACCAATGACAGAAAAATTGC  1364

Query 1953  TTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGC  2026
            |||||||||.||.||.||||||||||..|||||.||||||||||||||||||||.||||||||.|||||.||.|
Sbjct 1365  TTTCATTGACAAGAACAGAGATCTCTACATCACCTCTGTGAAACGATTTGGGAAAGAAGAACAGATTATTAAAC  1438

Query 2027  TTGGAACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTT  2100
            |||||||.|||||.|||||||||||||||...|||||||||||||||||.||||||.||||||||||||||||.
Sbjct 1439  TTGGAACCATGGTACATACTTTGGCATGGTGTGATACATGCAATATCCTCTGTGGAATTCAAGATACTCGATTC  1512

Query 2101  ATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGC  2174
            |.|||.|||||||||||.|||||..||||||||||||||||||||.|||||||||||||.||.|||||.|||||
Sbjct 1513  ACAGTATGGTATTACCCTAATACCATTTATGTGGACAGAGACATTCTGCCTAAAACATTGTACGAAAGAGATGC  1586

Query 2175  AAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCT  2248
            ||||||||.|||||||||.||.|||||.||||||||||||||||||||.||||||||.||||||||||||||||
Sbjct 1587  AAGTGAATATAGTAAAAACCCGCATATAGTGAGTTTTGTTGGAAATCAGGTAACTATAAGAAGAGCTGATGGCT  1660

Query 2249  CCCTGGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGAT  2322
            |||||||.||||||||||||.||||.||.||.||.||.||||||||.|||||.|||||.||.||.||||||||.
Sbjct 1661  CCCTGGTGCACATCAGCATATCACCGTACCCCGCCATCCTCCATGAGTATGTGAGCAGCTCCAAGTGGGAAGAG  1734

Query 2323  GCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCG  2396
            |||||.||.|||||.|||||||||||||||||||.||||||||||||.|||||.||||||||.|||||||||||
Sbjct 1735  GCTGTAAGGCTTTGCCGCTTTGTTAAGGAGCAAAGCATGTGGGCTTGCCTAGCGGCTATGGCTGTTGCTAATCG  1808

Query 2397  AGATATGACTACTGCAGAAGTAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAA  2470
            |||||||...|||||||||.||||||||||||||.||||.|||||||||||.||||.||||||||||.||||||
Sbjct 1809  AGATATGGTCACTGCAGAAATAGCCTATGCAGCAGTTGGGGAAATTGATAAAGTTCGGTACATCAATGCTATAA  1882

Query 2471  AAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATA  2544
            ||.||||||||||||.|||.||||||||||||||||||||..||||||||||||||||.|||||||||||||.|
Sbjct 1883  AAGATCTTCCATCTAGAGAGTCAAAAATGGCCCACATACTCATGTTTAGTGGGAACATCCAGGAGGCTGAAACA  1956

Query 2545  GTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACT  2618
            ||.||.||.|||||||||||||||||||||||.||.||||||||.|||||||||||.||||||||||||||.||
Sbjct 1957  GTCCTGCTCCAGGCTGGCCTTGTTTATCAAGCCATACAGATCAACATTAATCTCTATAACTGGGAAAGGGCGCT  2030

Query 2619  GGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTG  2692
            |||.||||||||||||||||||||.||.|||||||||||.||.|||||.|||||.|||||.|||||.|||||||
Sbjct 2031  GGAGTTGGCTGTAAAATACAAAACCCACGTTGATACAGTGCTCGCTTATCGTCAGAAGTTCTTGGACACATTTG  2104

Query 2693  GTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCC  2766
            |||||||||||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||
Sbjct 2105  GTAAACAGGAAACTAATAAACGATATTTACAATATGCAGAGGGCCTCCAAATAGACTGGGAGAAAATCAAAGCC  2178

Query 2767  AAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAA  2840
            ||||||||||||||||||||.||||||.||||.|.||||||.|||.||||.||||||||||||.|.||.|||||
Sbjct 2179  AAAATTGAGATGGAAATTACTAAAGAACGAGACCGATCATCCAGCGGCCAGTCCAGCAAGAGTGTGGGCTTAAA  2252

Query 2841  GCCC  2844
            ||.|
Sbjct 2253  GCAC  2256

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