Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13802
Subject:
NR_126435.1
Aligned Length:
4678
Identities:
700
Gaps:
3946

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTGCCTCTGCCATGTTAGAAGTGCCTTTCGCCTCCCACCATGACTCTGAGGCCTACACAGCCACGTCGAACTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAAGTCCACTTAAACCTCTTTTCGTTCCCAGTTTCAGTGTGGTGGAAAAGGAAGAGAGAGCTGAGGCAGACGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTAAGATCTGCTGTTACTTCTTGCTGTGTGACCTTGGGTGAAGTGAAGTGGGTGTGCCTGGGATCACACACAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGAGACGGGGTTTCACTGTGTTCACCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCTGCCTCAGCCTCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCTGCAACTCTGTTTTTTGCTTTCAGGAAAATCAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCCATGTTTGTGTCCACAAACAAGAGTGAAGATAATCTCTCCTATCTGAGAAATCCAGGAGTGGAGGAATCCAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGGGAACTCTGGCCAAGCTAAAAGAAGGTCTCAAGAGCCACAGATGTCTTGGATATTTCTGTATTTCAGACTCT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACTACCCAGACACCAAAAGAAGAAATGATTAACCCTGGAGGCTGCCTTGGTCTAGGTGAAAAAATATATGTACG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATGACAGTGCAATCATACTAGAACTCAGGATTAAGAAACTCACTCAAAACTGCTCAACTACATGGAAACTGAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AACCTGCTCCTGAATGACTACTGGGTACATAACGAAATGAAGGCAGAAGTAAAGATGTTCTTTGAAACCAACGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAACAAAGACACAACATACCAGAATCTCTGGGACACATTCAAAGCAGTGTGTAGAGGGAAATTTATAGCACTAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATGCCCACAAGAGAAAGCAGGAAAGATCTAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAGAAGCAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GAGGAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGAC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ACACAAGAACCCTTCAAAAAATCAATGAATCCAGGGGCTGGTTTTTTGAAAAGATCAATAAAATTGATAGACCG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTAGCAAGATTAATAAAGAAGAAAAGAGAGAAGAATCAAATAGACTCAATAAAAAATGACAAAGGGGATATCAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CACCAATCCCTCAGAAATACAAACTACCATCAGAGAATACTATAAACACCTCTACGCAAATAAACTAGAAAATC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TAGAAGAAATGGATAAATTCCTCGACACATACACTGTCCCAAGACTAAACCATGAAGAAGTTGAATCTCTGAAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACACCAATAACAGGCTCCGAAATTGAGGCAATAATTAATAGCTTACCAATGAAAAAAAGTCCAGGACCAGATGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATTCACAGCCAAATTCTACCAGAGGTACATGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AAAAAGAGGGAATCCTCCCTAATTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCTGGCAGAGACACA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACCAAAAAGAATTTTAGACCAATATCCTTGATGAACACTGATGCAAAAATCCTCAATAAAATACTGGCAAACCG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AATCCAGCAACACATCAAAAAGCTTATCCACCATGATTAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ACATACGAAAATCAATAAACGTAATCCAGCATATAAACAGAACCAAAGACAAAAACCACATGATTATCTCAATA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GACACAGAAAAGGCCTTTGAAAAATTCAACAACCATTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ACCTATTTCAAAATAATAAGAGCTGTCTATGACAAACCCACAGCCAATATCACACTGAATGGACAAAAACTGAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGCATTCCCTTTGAAAACTGGCACAACACATGGATGCCCTGTCTCACCACTCCTATTCAACATAGTGTTGGAAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTCTGGCCACAGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CTGTTTGCAGATGACATGATTGTATATCTAGAAAACCCCATTGCCTCAGCCCAAAATCTCCTTAAGCTGATAAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTGCAAAAATCACAAGCATTCTTATACACCAATAACAGAC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AAACAGAAAGCCAAATCATGAGTGAACTCTCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGATACAAA  2294

Query    1  ----------------------------------------------------ATGGCCATACTGCCCAAGGTAA  22
                                                                ||||||||||||||||||||||
Sbjct 2295  CAAATGGAAGAAAAGTCCATGCTCATGGACAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAA  2368

Query   23  TTTATAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAG  96
            ||||||.|||||||||||||||||||||||||.||||||||||||||||||||||||||||||.||||||||||
Sbjct 2369  TTTATAAATTCAATGCCATCCCCATCAAGCTATCAATGACTTTCTTCACAGAATTGGAAAAAAGTACTTTAAAG  2442

Query   97  TTCATATGGAACCAAAAAAGAGCCTGCATCACCAAGTCAATCCTAAGGCAAAAGAAAAAAGCTGGAGGCATCAC  170
            ||||||||||||||||||||||||..|||..||||||||||||||||.||||||||.||||||||||||||||.
Sbjct 2443  TTCATATGGAACCAAAAAAGAGCCCACATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAT  2516

Query  171  ACTACCTGACTTCAAACTATACTACACGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATA  244
            .|||||||||||||||||||||.|||.|||||||||||..||||||||||||||||||||||||||||||||||
Sbjct 2517  GCTACCTGACTTCAAACTATACCACAAGGCTACAGTAATAAAAACAGCATGGTACTGGTACCAAAACAGAGATA  2590

Query  245  TAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCT  318
            ||||||||.|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.||
Sbjct 2591  TAGATCAAAGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAAACT  2664

Query  319  GACAAAAACAAGCAATGGGGAAAGGATTCCCTATCTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAA  392
            ||||||||||||||||||||||||||||||||||.||||||||||||||||||||| ||||||||||||||||.
Sbjct 2665  GACAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAA-TGGCTAGCCATATGTAG  2737

Query  393  AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGGTGGATTAAAGACTTAAACATTA  466
            |||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||..|||
Sbjct 2738  AAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGATGGATTAAAGACTTAAATGTTA  2811

Query  467  GACCTAAAACCATAAAAACCCTAGAAGAAAACCTTGGCATTACCATTCAGGACATAGGAATGGGCAAGCACTTC  540
            |||||||||||.||||.|||||||||||||||||.||||.|||.||||||||||||||.|||||||||||||||
Sbjct 2812  GACCTAAAACCGTAAATACCCTAGAAGAAAACCTAGGCAATACTATTCAGGACATAGGCATGGGCAAGCACTTC  2885

Query  541  ATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTT  614
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||
Sbjct 2886  ATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAAT-----TAAAGAGCTT  2954

Query  615  CTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTCACAACCTACT  688
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|||||||||
Sbjct 2955  CTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTTGCAACCTACT  3028

Query  689  CATCTGACAAAGGGCTAATATCCAGAATTTACAATGAACTCAAACAAATT------------------------  738
            ||||||||||||||||||||||||||||.|||||||||||||||||||||                        
Sbjct 3029  CATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCC  3102

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3103  ATCAAAAAGTGGGTGAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGGCAAAAAACACATGAA  3176

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3177  AAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTA  3250

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3251  GAATGGCAATCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTT  3324

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3325  ACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTTGGTGTGGTGATTCCTCAGGGATCTAGAAC  3398

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3399  TAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGATTATAAATCATGCTGCTATAAA  3472

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3473  GACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAAC  3546

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3547  AATGATAGACTGGATTAAGAAAATGTGGCACACACACACCATGGAATACTATGCAGCCATAAAAATTGATGAGT  3620

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3621  TCATGTCCTTTGTAGGGACATGGGTGAAGCTGGAAACCATCATTCTCAACAAACTATTGCAAAAGGACAAAAAA  3694

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3695  CCAAACACCGCATGTTCTCACTCATAGGTGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACATC  3768

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3769  ACACTCTGGGGACTGTTGTGGGGTGGGGGGAGGCGCGAGGGATAGCATTAGGAGATATACCTAATGCTAAACGA  3842

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3843  CGAGTTAATGGGTGTAGCACACCAACATGGCACATGTATACATATGTAACAAACCTGCAGGTTGTGCACATGTA  3916

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3917  CCCTAAAACTTAAAGTATAATAACAATAATAATAATAATAGGAATCTAAAAAAAAAAACAATTTAAATAATGTC  3990

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 3991  ACCTAAGATTTTTTACAATTAGCAAGTGCTGGGGATTCAATCCAGGGAGTCTGACATCCAGAGCCAATACTTTA  4064

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 4065  CTACATGAAACAGCCCTAAAAAGAGCAGAGAATCTGTCTTCACAGATTTTCAAAGAGTAAGGAAACATGGTTAG  4138

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 4139  GCCTAGTGGTCAGGGAATGCTTTGTAGATGCAGTGGGGTGTGGAAAGAGGCCATGAAGAAGAAAGAGGATTTGA  4212

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 4213  AAGAAGAGAGAGGAATGAAGAAAGACTTCTAATAAATATGCTTGCTACGATCAATTCTGTGTCCTCCCTTTTCT  4286

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 4287  ATAAAATATGATCCTTGGCCCCTATAATTTCTTGACTCTAAATGTTTGAAAGAGTGAATCAGCATTATCATGGA  4360

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 4361  ACAATATGTGCTGATGGGTATAGTCTCCCCCTTTGATTGGTACTTTGCAAGTTTCACAAATAACTAACCACCTG  4434

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 4435  AGAACTTGTCTCCCTTGAACTGAATTCCATTTTAATTTTGTTCACCTTCTTGATTCTCTTCTTTTTGTGTCAAA  4508

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 4509  ATTGTACTTTTGCAAAGATGATTTCAAAAGTGTTTTCTTTCTGATTTAGTGCGGCCAGTTTTCAACATTCGGTC  4582

Query  739  --------------------------------------------------------------------------  738
                                                                                      
Sbjct 4583  TGAAATTGAGGAGTTGCTGTATGAAAAGTGAATTTATTTGAATGGTAAAGTTTCCTGTGAACAGAAATAAAGTA  4656

Query  739  ----------------  738
                            
Sbjct 4657  TTGTTTCACTCTGAAA  4672

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