Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13802
Subject:
XR_001750784.2
Aligned Length:
5204
Identities:
509
Gaps:
4638

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGCTATCTATGATGTCTTCACTTATGGATATATTTATTAACAAGTACTTATTAGCTATTTAACATTTCCTCTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGAGTGTTATTAATTACAGATGCTGTATTAGTTTCCTAAGGCTGCTGTAACAAATTACCACAAACGTGGTGACT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TAAAACAACAGAAATTTATTCTCTCACGGTTCTGGAGGCCAGAAGTTCAAAATACAGCTGGGACCAAAGGCATC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCTAAGGAAGGATACAGTCCTTGCCTCTTCCAGGGTTCTGTGCCTCCTGTTGGAATGAGCTCACTAACCAGTGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAACAAACTGTTTATCCTTCTATGATGTTGCAACTGCCTGGGCTTTCTAATGCGTCTTCAGATTTCGGTTTGTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCAGAACAAGTGAGAAAAGTTTTACAGCAACTCCACGAAACAAAGCAGACAGGCTCTCCTGAAGCCAAGGAGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TATGAAAAAGGCAGGCATCGCGCATTGAATCAAGTATGCCATTACCCTCACTCCCATGAACCTGTCTTTCAGCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAATCCATGACAGCAAGAAGACAAAGGCTTTGTTACAACAGAACAGAGCGGAGACATCCGTGGCCGTCAGCTTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTAAAGCCAGTAAATAAAGGTAATTAGTCAAAGTCCATAGAATAGAAAAGGGAGCAGTTCTTTTAAGAAAGAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTTCAGCGTCAGACCATCTTCACCAAAAATCCGACTGCATTCCCTAGGAAAGAAAAGAGAAGTTAATATCCAGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TACTGATGGTGACACCTCTTGTCTTATCTGACTCATCGCAGCCATTTTCAGGTCTGGCTCTCTTACCCAGGCTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAATGCGGTAGCATGATCTTGGCTCACTGCAACCTCCGCCTCCCAGACTCGAGCCATCCTCACACCTCAGCCTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGAGTAGCTGGGACTACAGGCACGCACCACCATGCCAGGCTAGTTTTTGAAATTTTTTTGTAGAGACAGACAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GATTTCACTCTGTTGCCTAGGCTGGTCTCAAACTCTTAAGCTCAGGTGATCTGCTCACCTTGGCCTCCCAAAGT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCTGAGATTACAGGCAAGAGCCACTGCACCTGGCTCTGAGGGGCCATTTTAATAAAAATGTTCAAGCTAGCAAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACATACAGGCAATAATGGAAGTGATACAATGACTGTACCTATACGACTATGGACTGAAGACAGACTTACCACTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGAGAATTTTAATTTTTTTCCCACTCGATTGTTCATGAACATTCAAGTATTTATGGGGTAACTGTCATGCTCCA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GGCATTGTATTTTCATGAGTAGTATATGTTTATAATGAAATCTATTTACAGGACTCTAGTACTAGTTTCTTTTC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAGTTTTAACTGAAATTAGTGTGCCTCAAAGTATTGCAAATCAAAGTAAATTCTAGCCAATGTTTGCCTCACAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAATAACCCCAAAAAAGGACCACGTGGAGAGGAGGAGTGACAAAGAATTAGGCACAGGGAGTATAGCCTTAAAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ATTAAGTTTCATAGTAAATGTGACTTTCAACTGGATGAGAATGTTGGGAGTTGCAGGTCACCGGTTCCAGGAAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GTTAAAGACATGTGTTGCACACACAGAAACTTGTATTGAAATTTGTTTACTTTCATGTAAGGAGGCTTCCAAAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGGAAGGATTTTTGTAAAATGAAAGTAAGATTTCCCAAAGATAAATTTTAACTTTAAAGCCTTCTGTAATGTAA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ACAGAAATTACACACGCTCACATACACAGGAAAGTGAACAGTCTCTTTGAAGCCCCACAGCCAATGGGATATTC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGAATTAGCACCATACATAGAACCAGAGGAAGTTTTCATAGAGCATCCTGGGCACAAAGTTCATTTTCTGTACT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TATAAGGCGATCTGCTCCGTGAGAAAGCTGCCGTGTAGAGCTGGAGTTGAGAGTCGTGGGTTTATCCCATCATT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TACAACTACTGATTGCCTTTTAAAATATGAACACATTTATTAAGAACCACAACAAAACCCATTCCTGATTAAAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GATATCTTTTTCTTATCACTGGCCCTAGCCAGTGATTGTTCTTCAACCAAGAGCTGGGAGGAGTGCTCCTAAGC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AAAGATTTTGGATGCAGGAAAGGAACACTCCAATCCCACAGGGAAGACCAACAGATGTGTATTCCAGACAGACA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GAGCCTCACTGGCAGAGCAGCTGGGAAGACGCTGCTGACTGACAGGTGGAGACTGTTCTCACCTGGCTCAACCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GTCTTCCAGGTGTTCATTCCCTCGTTCTTCCCCTTTCTTTCCCCTTCTCTCACTGCCGACCTTCTCCCCTTTGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TACTGTTGTTGTAGAAATTAAAAATGCTCTCCATCTAAATGCCAGGTCACTTGTGTAAAATCCCATACTATTTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGCATTAAACTCTAAGAAACATGAAAACTGAAAAAAAAATATGGATTTTTATGGAGAAGCGAATAACAGTGGGT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTCTCTTTGGGATGATGAGATCAGACTTTCTGGGCAAGTGGCATTGACAGGTGGTATAGCTTGAAATGAAGCAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AGAAGTTGGAGGACACTAATAATTTAGTTATGCTTATTATTAAAACAGCAGCCACTAGTTGTTGAACCCTGTCT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATGTTAAATAGCATCTTAAGCATATTTTATAGTAAGCATATTTTATAGGTGCCTGACATAGGCAAATATGTC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTTGGCTCCAGTTTGATGCTATCTAAGATTTTTCCCCTAAGAAAACGTCCTTGTTAATAATATGGTATATATTT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTTTCTTCCTAAATTTCAAATTCACTTGAGGCAATTGAATTCTCTTGTAGTATATAAATGATTATAAAAAACTA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CTTCTAAATACAGTCCTTACCATCTAGATTTGATACTTCATTGAAAATTATTTTGATATTACTGATAAAAAAAT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  ACTGGAAATGCTTTCATACCATTCTAGAGAAAATAGATTCTGGTGCTATGGGACAAATTCTATTTCCAGTCTTA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CACACTAACTCTATTCTTCCCTTGTTCAGTCATGAGAGCTTCGGGAGTAACTTCTGGAGTAACTTCTTGGCAGA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TGGTATTAATGAGTCTACAGGGAAAAAAAGATCGAGAATCTAAGAATTGTCTGACAATTTTACCTCTCATATGG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AGGAGGCCATTGGAGAACATTCCCTTCAGAGATAGTATTTTCTGCTTGACAATAAAAGCTCTGATTCTATTTCA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GAAATGGTCAGCTTCACTCTACATGCACTATAGGTAGAGTGCTAAATCAGATTTTACTAAGTTCAGAGTTAGTC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGACATGAGAGATGTGGAAAAAATGAAGTGCATTCCCAAAACAACACTTCTGCTAGCAGCAGTCTCTTGTTTTA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AATCAGTTATCTTAAACTGACTTAACTTGCTTTGAGGTATTCTTGAGATACTTCTTTTTATATAAAACTTTTGT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  TGTTTTAAATCAATGTGTGTCTAAACCATGGAAGCATTCAAGTAGAACACACACACTGTACAGGTGCACATAGG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TATCTTCAAACAGGAACAACTGTAGTCTGATAATCACATTCCCCTATAAATACTGTTTAAAAATTTTACAATGC  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  AAGATCATGTCTATTTGGATGGGAATCAAATATAAAATATCTTTAGTAATCTCAAATAGTCATAGGGCTCTCCC  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  CCAATCCAGTAAGCATTTACTCTCTTTGAATTGCTTTTTAATTCTTTAATTATAGCTGAGTTTTCATAGACACA  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TATAGAAAATCAACTCACGGTGAGAATTAATATTCCCAAGCACTTGCAAAGTGGTGATAGGAAATTATAGCTCA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TGCCTATAATCCCAGCACTTTGGGAGGCCAAAAACCGCATGATTATCTCAATAGATGCAGAAAAGGCCTTCGAC  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  AAAATTCAACACCCCTTCATACTAAAAGTTCTTAAACTAGGTATGGATGGAACGTATCTATCTCAAAATAATAA  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  GACCTATTTATGACAGACTCACAGCCAATATCATACTGAATGGGCAAAAGCTAGAAGCATTCCCTTTGAAAACC  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  GGTCCAAGAAAAGGATGCCATCTCTTACCACTCCTATTCAACATAGTATTGGAAGTTCTGGCCAGGGCGATCAG  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  GCAAGAGAAAAAAATAAAGGGTATCCAAGTAGGAAAAGAGGAAGTCAAATTGTCTCTGTTTGCAGATGACATGA  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  TTATCTATTAAGAAAACCCTACCGCCTCAGCCTAAAATCTCCTTAAGCTGATAAGGAACTTCAGCAAAATCTCA  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  GGACACAAAATCAATGTGCAAATATCACAAGCATTCCTATACACCAGTAATAGCCAAATCATGAGTGAACAGCT  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  ATTTACAATTGCTACAAAGAGAATAAAATACCTAAGAATACAACTTACTTACAAGGGATTTGAAGGACCTCATC  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  AACAAACCACTGCTCAAGGAAATAAGAGAGGACACAAACGGGTGGGAAAATATTCTATGCTCATTGATAGGAAG  4440

Query    1  ----------------ATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAA  58
                            |||||||||||||||||.||||||||||||||||||||..|.||||||||||||.||.
Sbjct 4441  AATCAATATCGTCAAAATGGCCATACTGCCCAAAGTAATTTATAGATTCAATGCTCTTCCCATCAAGCTATCAT  4514

Query   59  TGACTTTCTTC-ACAGAATTGG-AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATCACCA  130
            ||||||||||| |||||||||| ||||||||||||||||.|||||.||.||||.|||||||||||||||..|||
Sbjct 4515  TGACTTTCTTCTACAGAATTGGAAAAAAACTACTTTAAACTTCATCTGAAACCTAAAAAGAGCCTGCATAGCCA  4588

Query  131  AGTCAATCCTAAGGCAAAAGAAAAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACACGGCTACA  204
            ||.||||||||||..|||||||.|||||||||||||||||||.|||||||.|||||||||||||||.|||||||
Sbjct 4589  AGACAATCCTAAGTAAAAAGAACAAAGCTGGAGGCATCACACGACCTGACATCAAACTATACTACAAGGCTACA  4662

Query  205  GTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT  278
            |||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||.||||||||||
Sbjct 4663  GTAACCAAAACAGCATGATACTGGTACCAAAACAGAGATATAGACCAATGGAACAGAACAGAGGCCTCAGAAAT  4736

Query  279  AATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGG-GGAAAGGATTCCCTA  351
            ||..||.||.|||||||||.||||..||||||||||.||||||||||||||||||||| ||||| |||.|||||
Sbjct 4737  AACACCACACATCTACAACCATCTAGTCTTTGACAAGCCTGACAAAAACAAGCAATGGAGGAAA-GATGCCCTA  4809

Query  352  TCTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAAAAAGCTGAAACTGGATCCCTTCCTTACACCTTA  425
            |.||||||||||||.||||||||.||||||||||||||.|.|||.|||||||||||.|||||||||||||||||
Sbjct 4810  TTTAATAAATGGTGTTGGGAAAATTGGCTAGCCATATGCAGAAAACTGAAACTGGACCCCTTCCTTACACCTTA  4883

Query  426  TACAAAAATTAATTCAAGGTGGATTAAAGACTTAAACATTAGACCTAAAACCATAAAAACCCTAGAAGAAAACC  499
            ||||||||||||.||||||||||||||||||||||||.|.||||||||||||||||||||.|.|||||||||||
Sbjct 4884  TACAAAAATTAACTCAAGGTGGATTAAAGACTTAAACGTAAGACCTAAAACCATAAAAACTCGAGAAGAAAACC  4957

Query  500  TTGGCATTACCATTCAGGACATAGGAATGGGCAAGCACTTCATGTCTAAAACACCAAAAGCAA-------TGGC  566
            |.||||.||||||||||||.|||.|.|||||.||..||||||||.||          |.||.|       ||||
Sbjct 4958  TAGGCAATACCATTCAGGATATATGCATGGGTAAAGACTTCATGACT----------AGGCCAGGCGTGGTGGC  5021

Query  567  AACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCA  640
                           |.|||..||     ||                                           
Sbjct 5022  ---------------TTACACCTG-----TA-------------------------------------------  5032

Query  641  GAGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGA  714
                                                                                      
Sbjct 5033  --------------------------------------------------------------------------  5032

Query  715  ATTTACAATGAACTCAAACAAATT  738
                                    
Sbjct 5033  ------------------------  5032

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