Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13957
- Subject:
- XR_427107.3
- Aligned Length:
- 4535
- Identities:
- 1280
- Gaps:
- 3247
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GATGTAAGAGGCAGGGCACTCGGCTGCGGATGGGTAACAGGGCGTGGGCTGGCACACTTACTTGCACCAGTGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGAGAGGGGGTGCAGGCTGAGGAGCTGCCCAGAGCACCGCTCACACTCCCAGAGTACCTGAAGTCGGCATTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATGACAGGTGACAAGGGTCCCCAAAGGCTAAGCGGGTCCAGCTATGGTTCCATCTCCAGCCCGACCAGCCCGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCAGCCCAGGGCCACAGCAAGCACCTCCCAGAGAGACCTACCTGAGTGAGAAGATCCCCATCCCAGACACAAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCGGGCACCTTCAGCCTGCGGAAGCTATGGGCCTTCACGGGGCCTGGCTTCCTCATGAGCATTGCTTTCCTGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCAGGAAACATCGAGTCAGATCTTCAGGCTGGCGCCGTGGCGGGATTCAAACTTCTCTGGGTGCTGCTCTGGG 444
Query 1 -----------------------------------------------------------------ATGGTGCGA 9
.||| ||||
Sbjct 445 CCACCGTGTTGGGCTTGCTCTGCCAGCGACTGGCTGCACGTCTGGGCGTGGTGACAGGCAAGGACTTGG-GCGA 517
Query 10 TGTCAGCTCACTGCAACCTCTACCTCCC--AGGTGCCCCGCACCGTCCTCTGGCTGACCATCGAGCTAGCCATT 81
.|| ||||.|.||||||..||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GGT-------CTGCCATCTCTACTACCCTAAGGTGCCCCGCACCGTCCTCTGGCTGACCATCGAGCTAGCCATT 584
Query 82 GTGGGCTCCGACATGCAGGAAGTCATCGGCACGGCCATTGCATTCAATCTGCTCTCAGCTGGACGAATCCCACT 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GTGGGCTCCGACATGCAGGAAGTCATCGGCACGGCCATTGCATTCAATCTGCTCTCAGCTGGACGAATCCCACT 658
Query 156 CTGGGGTGGCGTCCTCATCACCATCGTGGACACCTTCTTCTTCCTCTTCCTCGATAACTACGGGCTGCGGAAGC 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGGGGTGGCGTCCTCATCACCATCGTGGACACCTTCTTCTTCCTCTTCCTCGATAACTACGGGCTGCGGAAGC 732
Query 230 TGGAAGCTTTTTTTGGACTCCTTATAACCATTATGGCCTTGACCTTTGGCTATGAGTATGTGGTGGCGCGTCCT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TGGAAGCTTTTTTTGGACTCCTTATAACCATTATGGCCTTGACCTTTGGCTATGAGTATGTGGTGGCGCGTCCT 806
Query 304 GAGCAGGGAGCGCTTCTTCGGGGCCTGTTCCTGCCCTCGTGCCCGGGCTGCGGCCACCCCGAGCTGCTGCAGGC 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GAGCAGGGAGCGCTTCTTCGGGGCCTGTTCCTGCCCTCGTGCCCGGGCTGCGGCCACCCCGAGCTGCTGCAGGC 880
Query 378 GGTGGGCATTGTTGGCGCCATCATCATGCCCCACAACATCTACCTGCACTCGGCCCTGGTCAAGTCTCGAGAGA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GGTGGGCATTGTTGGCGCCATCATCATGCCCCACAACATCTACCTGCACTCGGCCCTGGTCAAGTCTCGAGAGA 954
Query 452 TAGACCGGGCCCGCCGAGCGGACATCAGAGAAGCCAACATGTACTTCCTGATTGAGGCCACCATCGCCCTGTCC 525
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TAGACCGGGCCCGCCGAGCAGACATCAGAGAAGCCAACATGTACTTCCTGATTGAGGCCACCATCGCCCTGTCC 1028
Query 526 GTCTCCTTTATCATCAACCTCTTTGTCATGGCTGTCTTTGGGCAGGCCTTCTACCAGAAAACCAACCAGGCTGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 GTCTCCTTTATCATCAACCTCTTTGTCATGGCTGTCTTTGGGCAGGCCTTCTACCAGAAAACCAACCAGGCTGC 1102
Query 600 GTTCAACATCTGTGCCAACAGCAGCCTCCACGACTACGCCAAGATCTTCCCCATGAACAACGCCACCGTGGCCG 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GTTCAACATCTGTGCCAACAGCAGCCTCCACGACTACGCCAAGATCTTCCCCATGAACAACGCCACCGTGGCCG 1176
Query 674 TGGACATTTACCAGGGGGGCGTGATCCTGGGCTGCCTGTTCGGCCCCGCGGCCCTCTACATCTGGGCCATAGGT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TGGACATTTACCAGGGGGGCGTGATCCTGGGCTGCCTGTTCGGCCCCGCGGCCCTCTACATCTGGGCCATAGGT 1250
Query 748 CTCCTGGCGGCTGGGCAGAGCTCCACCATGACGGGCACCTACGCGGGACAGTTCGTGATGG------------- 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CTCCTGGCGGCTGGGCAGAGCTCCACCATGACGGGCACCTACGCGGGACAGTTCGTGATGGAGGCTGGAGTGCA 1324
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1325 ATGGCGCGATCTCCGGCTCACCGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGACC 1398
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1399 AGCTGGGATTACAGGCCACCACACCCAGCTAATTTTGTATTTTCAGTAAAGACGGGGTTTCTCCATGTTGGTCA 1472
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1473 GGGTGGTCTCGAACTCCCAGCCTCAGGTGATCTGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGA 1546
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1547 GCCACCGCGCCCGGCTCTTTCTTTCTTTTTTGAGACAGGATTTCACTCTGTTGCTCAGGCTGGAGTGCAATGGC 1620
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1621 GCCATCACAGCTCGCTGCAGCCTCAACTTCAGCCTCCCGAGTCATTGGGACTACAGGCTCATGCCACCACACCA 1694
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1695 GGCTAATTTTTAAAATTATTTGTAGAGATGTGGTCTTCCTATGTTTCCCAGGCTGGTCTCGAACTCCTGGGCTC 1768
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1769 AAGTGATCTTCCCGCCTTGGCTTCCCAAAGTGCTGGGATTACAGACGTGAGCCACCCCACTCAGCTTTGTTTCC 1842
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1843 TTCATGTAGCCCAGAGGGCGACACTATAAGCCCCATTTTACAGATGAGAAAACAGATCCTGACAGATGAGGTGA 1916
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1917 CTTGCTGGAAGCTGCAGACCCAGGACTAACAGAAGCCTTTTCCCCAAAACTGTTTAGTCTTCAGCAACCAGCTA 1990
Query 809 -------------------------------------------------------------------------- 808
Sbjct 1991 TGGGATGGGAGCTCCCCATTTCTCCCCACCCATCCCCTCTTGCCACCTAGGGACAGAGCTGTCCCAGTTCAACA 2064
Query 809 -------------------------------------------------------------------------- 808
Sbjct 2065 GTGGAAAAACAGAGCATGCCCCCAGGGATAAATCGGTTGAGGGACTACAGAGGATCTCTCCTCTGGAATCCCCA 2138
Query 809 ---------------------------------------AGGGCTTCCTGAGGCTGCGGTGGTCACGCTTCGCC 843
|||||||||||||||||||||||||||||||||||
Sbjct 2139 GTCCTGTCTACTCCTCACCAAGGAGTTCACCCCCACCCCAGGGCTTCCTGAGGCTGCGGTGGTCACGCTTCGCC 2212
Query 844 CGTGTCCTCCTCACCCGCTCCTGCGCCATCCTGCCCACCGTGCTCGTGGCTGTCTTCCGGGACCTGAGGGACTT 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 CGTGTCCTCCTCACCCGCTCCTGCGCCATCCTGCCCACCGTGCTCGTGGCTGTCTTCCGGGACCTGAGGGACTT 2286
Query 918 GTCGGGCCTCAATGATCTGCTCAACGTGCTGCAGAGCCTGCTGCTCCCGTTCGCCGTGCTGCCCATCCTCACGT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 GTCGGGCCTCAATGATCTGCTCAACGTGCTGCAGAGCCTGCTGCTCCCGTTCGCCGTGCTGCCCATCCTCACGT 2360
Query 992 TCACCAGCATGCCCACCCTCATGCAGGAGTTTGCCAATGGCCTGCTGAACAAGGTCGTCACCTCTTCCATCATG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361 TCACCAGCATGCCCACCCTCATGCAGGAGTTTGCCAATGGCCTGCTGAACAAGGTCGTCACCTCTTCCATCATG 2434
Query 1066 GTGCTAGTCTGCGCCATCAACCTCTACTTCGTGGTCAGCTATCTGCCCAGCCTGCCCCACCCTGCCTACTTCGG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2435 GTGCTAGTCTGCGCCATCAACCTCTACTTCGTGGTCAGCTATCTGCCCAGCCTGCCCCACCCTGCCTACTTCGG 2508
Query 1140 CCTTGCAGCCTTGCTGGCCGCAGCCTACCCGGGCCTCAGCACCTACCTGGTCTGGACCTGTTGCCTTGCCCACG 1213
|||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509 CCTTGCAGCCTTGCTGGCCGCAGCCTACCTGGGCCTCAGCACCTACCTGGTCTGGACCTGTTGCCTTGCCCACG 2582
Query 1214 GAGCCACCTTTCTGGCCCACAGCTCCCACCACCACTTCCTGTATGGGCTCCTTGAAGAGGACCAGAAAGGGGAG 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2583 GAGCCACCTTTCTGGCCCACAGCTCCCACCACCACTTCCTGTATGGGCTCCTTGAAGAGGACCAGAAAGGGGAG 2656
Query 1288 ACCTCTGGC----------------------------------------------------------------- 1296
|||||||||
Sbjct 2657 ACCTCTGGCTAGGCCCACACCAGGGCCTGGCTGGGAGTGGCATGTATGACGTGACTGGCCTGCTGGATGTGGAG 2730
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2731 GGGGCGCGTGCAGGCAGCAGGATAGAGTGGGACAGTTCCTGAGACCAGCCAACCTGGGGGCTTTAGGGACCTGC 2804
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2805 TGTTTCCTAGCGCAGCCATGTGATTACCCTCTGGGTCTCAGTGTCCTCATCTGTAAAATGGAGACACCACCACC 2878
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2879 CTTGCCATGGAGGTTAAGCACTTTAACACAGTGTCTGGCACTTGGGACAAAAACAAACAAACGAAAAACATTTC 2952
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 2953 AAAAGGTATTTATTGAGCACCTGCAGGCGTGACCTGACAGCCCAAGGGTGGGTGGGGTGAGGGCTTGAGGACTT 3026
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3027 GGGCGGGACACAGGCTCCAAACTGGAGCTTGAAATAGTGTCTGATGAATGTTAAATTATCTATCTATCTATTTA 3100
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3101 TTTATTTATTTGAGACAGGGAAAGGGTCTCCCTCTGTTGCCAAGGCTGGAGTGCAGTGGCGCAATCTTAACTCA 3174
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3175 TTGCAACCTCCACCTTCTGGGTTCAAGCGATTCTCTTTATTCAGCCCCGGGAGTGGCGCGCGCCACCACGCCCA 3248
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3249 GCTAATTTGTGTATTTTCAGCAGAGACGGGGTTTGCCATGCTGGCCAGGCTGGTCTCGAACTGCTGGATTCAAG 3322
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3323 TGATCCGCCCATCTCCGTCTCCCAAAGTGCTGGGAATTACAGGCGTGAGCCACCAAACCCGGCCTGATTAAAGT 3396
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3397 TAAATAAATACTAGTTCCCTTCTCGTCCAAAGGAGCAGGGAATGGGAACCGGGAAGGCACGAAGTCTCTAAAGC 3470
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3471 ATCCAGAAGACCCCTACACCAGGGTCTGGTCCGCTCCTATTCGCCGCAGCCTTTCTGTTCCGCCTGCAACCCAT 3544
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3545 TTTCCAGACAGTAAAACGGCGGCGCACTTCTTTCTCCGTCAGGCACCAGGTCATAAGGAACCCAAGAGTCTGTG 3618
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3619 CCTCTGAGGCCCAAATTATTTGCTGTTTCCTCAGGGGAGCCGGCGGCCGCGACTCCCACGCCGCGCCGTTACCG 3692
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3693 CTCCCTCTCTGCTGACTGCTCCCCCTAGGGGCAGAGACGGTCCCGACGCCCGCCATCCCGCCCCGGCCTCACCC 3766
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3767 CTCCCCGCCAGGCGGAACGACGCGGGGAGGCGGGCGCTCGGGGCTCGCGCCAGGGGCCCCAGAATCCTTCGGGG 3840
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3841 AGAGTGGGTGGGAGGAAGCTGTGTGGGCGGGGAGCCCCCTCTGCCTTAGGGAGCGGCTGGGCACCCATTCGCCC 3914
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3915 CATTCAGGGGCTGCACTTTATAGACGTTCCCTAGGCTGTTTCTAGGCTCCCCCAAGTCCCTCCTCCAGCCTCGT 3988
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 3989 CGGGTCCCTCAGACCCCAGCCCAGGACCTGCGGAGGGCCGCAGCGAGGAGAGGCCAACAGGCCTTTCCCTAGAG 4062
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 4063 TTGAACCTGGGCCGGGTGTTGCACCTGGAAGAACCCCCGATTTCCTGGGGACCCAGCAGGGCAGGCGGCCTGGC 4136
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 4137 TCCGCGCTCAGGTCCGGACGCTTGTTTATGAGAAGAATTTCCTCTTTCTTAAAAGGGCAACGATGCGAGTGGGT 4210
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 4211 CCCTCAAGGAGAGAAGAGATGGGACCGGTCTGGTGCGACCTGGGCAAGCGCTGCAGAGGGTACCTGGGCAAGAG 4284
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 4285 GGCCGCCCGCCTCCTCTGGGTTTGGCACTGGAGAAGATGGGTCCATGCCAGCTGAAGGAGGAGATGGATGGGGG 4358
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 4359 ACGTTTAGCGAAGAAAGGCATCTCCCAGATCCTTTAGCCTCCTGGAAGTGCCCCCGTTGTACCCCCTACACACC 4432
Query 1297 -------------------------------------------------------------------------- 1296
Sbjct 4433 CCTCTTGGCATTGAGTGCCAGTCCTCTGCCAGGCTCTGTGTTACAAGTTGGGGAGGGCGGCAAAGTCCCGAATT 4506
Query 1297 --------------------- 1296
Sbjct 4507 AAAGATGTCAGTTCTCAAGGA 4527
