Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13986
- Subject:
- NM_009582.4
- Aligned Length:
- 2711
- Identities:
- 1505
- Gaps:
- 1055
Alignment
Query 1 ATGGCTTGCCTCCATGAGACCCGAACACCCTCTCCTTCCTTTGGGGGCTTTGTGTCTACCCTAAGTGAGGCATC 74
|||||.|||||||||||.||||||||||||||.||||||||||||||||||||||||||.|||||||||||.||
Sbjct 1 ATGGCCTGCCTCCATGAAACCCGAACACCCTCCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGGCTTC 74
Query 75 CATGCGCAAGCTGGACCCAGACACTTCTGACTGCACTCCCGAGAAGGACCTGACGCCTACCCAGTGTGTACTTC 148
.|||||.||||||||.|||||||||||.||||||||.||||||||.|||||||||||.|||||.||||||||||
Sbjct 75 TATGCGAAAGCTGGATCCAGACACTTCAGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTC 148
Query 149 GAGATGTGGTACCCCTTGGTGGGCAGGGTGGGGGAGGGCCCAGCCCCTCCCCAGGTGGAGAGCCGCCCCCTGAG 222
|||||||.||.||.||.||||||||||||||.|||||.||||||||||||||||||||||||||.|||||.|||
Sbjct 149 GAGATGTTGTGCCTCTCGGTGGGCAGGGTGGAGGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCCCCAGAG 222
Query 223 CCTTTTGCCAACAGTGTCCTGCAGCTACATGAGCAGGATGCAGGGGGCCCAGGGGGAGCAGCTGGGTCACCTGA 296
|||||||||||.||||||||.||||||||||||||||||.||||.||.|||||||||||..|||||||||||||
Sbjct 223 CCTTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACCTGA 296
Query 297 GAGTCGGGCATCCAGAGTTCGAGCTGACGAGGTGCGACTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAGGGCC 370
||||||.|||||.||||||||||||||.|||||.||.||||||||||||||||||||||||||||||||.||.|
Sbjct 297 GAGTCGAGCATCTAGAGTTCGAGCTGATGAGGTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTC 370
Query 371 TCTTTGGCTGCCTGCGCCCTGTCTGGACCATGATTGGCAAAGCCTACTCCACTGAGCACAAGCAGCAGCAGGAA 444
|.||||||||||||||||||||||||||.|||||||||||||||||||||||.||.||||||||.|||||||||
Sbjct 371 TTTTTGGCTGCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAA 444
Query 445 GACCTTTGGGAGGTCCCCTTTGAGGAAATCCTGGACCTGCAGTGGGTGGGCTCAGGGGCCCAGGGTGCTGTCTT 518
|||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||.||
Sbjct 445 GACCTTTGGGAAGTCCCCTTTGAGGAAATCCTGGACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCTGTTTT 518
Query 519 CCTGGGGCGCTTCCACGGGGAGGAGGTGGCTGTGAAGAAGGTGCGAGACCTCAAAGAAACCGACATCAAGCA-C 591
||||||.||||||||||||||||||||.||||||||||||||.|||||.|||||.||.||.||||||||||| |
Sbjct 519 CCTGGGACGCTTCCACGGGGAGGAGGTAGCTGTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATC 592
Query 592 TTGCGAAAGCTGAAGCACCCCAACATCATCACTTTCAAGGGTGTGTGCACCCAGGCTCCCTGCTACTGCATCCT 665
|| |||||||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||||||||||||||
Sbjct 593 TT-CGAAAGCTGAAGCACCCCAACATCATCACTTTCAAGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCT 665
Query 666 CATGGAGTTCTGCGCCCAGGGCCAGCTGTATGAGGTACTGCGGGCTGGCCGCCCTGTCACCCCCTCCTTACTGG 739
.|||||.||||||||.||.||.|||||.||||||||.||..|.||.|||||||||||||||||||||||.||||
Sbjct 666 TATGGAATTCTGCGCTCAAGGACAGCTATATGAGGTGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGG 739
Query 740 TTGACTGGTCCATGGGCATCGCTGGTGGCATGAACTACCTGCACCTGCACAAGATTATCCACAGGGATCTCAAG 813
||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||.||.|||
Sbjct 740 TTGACTGGTCCATGGGCATCGCTGGTGGCATGAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAG 813
Query 814 TCACCCAACATGCTAATCACCTACGACGATGTGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGA 887
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TCACCCAACATGCTAATCACATACGACGATGTGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGA 887
Query 888 CAAGAGCACCAAGATGTCCTTTGCAGGGACAGTAGCCTGGATGGCCCCTGAGGTGATCCGCAATGAACCTGTGT 961
|||||||||||||||||||||||||||.|||||||||||||||||.|||||.||||||.|.|||||||||||||
Sbjct 888 CAAGAGCACCAAGATGTCCTTTGCAGGAACAGTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGT 961
Query 962 CTGAGAAGGTCGACATCTGGTCCTTTGGCGTGGTGCTATGGGAACTGCTGACTGGTGAGATCCCCTACAAAGAC 1035
||||||||||.|||||||||||||||||.|||||||||||||||||.||||||||.|||||.|||||||||||.
Sbjct 962 CTGAGAAGGTTGACATCTGGTCCTTTGGGGTGGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGAT 1035
Query 1036 GTAGATTCCTCAGCCATTATCTGGGGTGTGGGAAGCAACAGTCTCCATCTGCCCGTGCCCTCCAGTTGCCCAGA 1109
|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||.||||||||.||||||||
Sbjct 1036 GTAGATTCCTCAGCCATCATCTGGGGTGTGGGAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGA 1109
Query 1110 TGGTTTCAAGATCCTGCTTCGCCAGTGCTGGAATAGCAAACCACGAAATCGCCCATCATTCCGACAGATCCTGC 1183
||||||.||.||.||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||.|||
Sbjct 1110 TGGTTTTAAAATTCTACTTCGCCAGTGCTGGAACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGC 1183
Query 1184 TGCATCTGGACATTGCCTCAGCTGATGTACTCTCCACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGG 1257
||||.||||||||.|||||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGCACCTGGACATCGCCTCCGCTGATGTGCTCTCTACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGG 1257
Query 1258 CGGGAAGAAGTAAAACTGCACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGAACT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CGGGAAGAAGTAAAACTGCACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGAACT 1331
Query 1332 GGTGATGAGGAGGAGGGAGGAGCTCAGACACGCCCTGGACATCAGGGAGCACTATGAAAGGAAGCTGGAGAGAG 1405
|||||||.||||.|||||||||||||||||.|||||||||||||||||||||||||||.|||||.|||||||||
Sbjct 1332 GGTGATGCGGAGAAGGGAGGAGCTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGAGAGAG 1405
Query 1406 CCAACAACCTGTATATGGAACTTAATGCCCTCATGTTGCAGCTGGAACTCAAGGAGAGGGAGCTGCTCAGGCGA 1479
|||||||||||||.||||||||.||||||||||||.||||.||.||||||||.||||||||..|||||||||||
Sbjct 1406 CCAACAACCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGA 1479
Query 1480 GAGCAAGCTTTAGAGCGGAGGTGCCCAGGCCTGCTGAAGCCACACCCTTCCCGGGGCCCCC------------- 1540
|||||.||||||||..||.||||.||.||.||.||.|||.||||||||||.|||||||.||
Sbjct 1480 GAGCAGGCTTTAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCCTCCTACATGGAAACAC 1553
Query 1541 --------AGCTTCCCTCCCTCCATGAAA--------GCCAC--------TCGTATTCCTTGTACATAGAGAA- 1589
|||| |..||.|||| ||||| ||| || .||.||..||
Sbjct 1554 TATGGAGAAGCT-------CATCAAGAAAAGGAACGTGCCACAGAAACTGTCG----CC----CCACAGCAAAA 1612
Query 1590 ------ATATTTATATAAATNTNATATATATATACATA--------TATATATA-TATATGC-GCCACATAATC 1647
|||| |.|.| |.|||.| ||..||.| ||.|||| |||..|
Sbjct 1613 GGCCAGATAT---------TCTCA-------AGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCTA----- 1665
Query 1648 AACAGAAAGATGGGGC--------TGTCCCAGCCGTAAG---------TCAGGCTCGAGGGAGACTG------- 1697
||...|.|||||| ||||| |||| ||| .||.||.||||.|.|
Sbjct 1666 ---AGTGGGGTGGGGCTTCCTGGGTGTCC------TAAGGGCCCCCCTTCA-CCTGGAAGGAGTCGGCGTGGCA 1729
Query 1698 ATCCCC-------------------------------------------------------------------- 1703
|..|||
Sbjct 1730 AGACCCGTCACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCC 1803
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 1804 CATGAGCCTGGAGGACTAGGAAGCCCAGGGGGCCTAGGAGTGGGCCCTTCAGCTTGGGATGCTTGCCCCCCTGC 1877
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 1878 TCTCCGTGGACTCCACCATGACCTTCTACTCCGAAAGATGTCATCATCATCCCCAGACCTGCTATCAGCAGCGC 1951
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 1952 TGGGAGCCCGAGGCCGAGGGGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACT 2025
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2026 CCTCCAAGTGAGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGAGCTAAAGGGGAACCCCCTCC 2099
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2100 ACCAGTAGGGCCTGGAGAAGGTGTGGGGCTGCTGGGAACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAACC 2173
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2174 GGGCTGGGTCCCAGCACTTGACCCCCGCTGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGAAACGTGGT 2247
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2248 ATCTCATCTGAAGAAGAAGAAGGAGAGGTAGACAGTGAAGTAGAGCTACCCCCAAGTCAAAGGTGGCCTCAGGG 2321
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2322 CCCGAACATGCGTCAGTCACTATCTACATTCAGCTCAGAGAACCCATCAGATGTGGAGGAAGGTACAGCTAGTG 2395
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2396 AGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGATGAACGATCTGATGAC 2469
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2470 ATGTGCTCACAGGGCTCAGAAATTCCACTGGACCTACCTACTTCAGAGGTGGTCCCTGAACGTGAAGCCAGCTC 2543
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2544 CTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAGCACTGAATTGGACA 2617
Query 1704 ----------------------------------------------- 1703
Sbjct 2618 ACTCCAACAGCATTGATGCCTTGCGGCCCCCAGCCTCCCTTCCTCCA 2664
