Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13986
- Subject:
- XR_001781537.1
- Aligned Length:
- 4189
- Identities:
- 1448
- Gaps:
- 2574
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCACCCCCTTAGCATATGTTAGTTACACATTTTAATGGGTTTCACTGTTACATTTTCATACGTGTGTGTAATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACTTGATCACCCATATTCCCCATAACTCTGGTTCCATCGTTCCCATAGCCTCCTTGTCTCCTTACATTGTCAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCGGTTTTTGTTTTGTTTTTTGTTTTGTTTTTGTGACCCACAGAGTTTAACTAGGTTTGCAAATAGGATCATG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATGAGGGTTAATTTACAGTATCACTAGCACCTTATCAATGGCTATACCATCAAAGAAAATGGCTTTCCTTCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCAGCAACCATTAGCTGCATGTATAGTCTCAACAATAGAGGACCAGAGGGAGGGAAGAGGTGATGTGGTGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCCTCCATATCTCAGGATTGCATGTTCACATATCCAATATGTGATAATCACTATATTTTATGCTGATAATCAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATATCCCTAGAGTTTATGGGTTTGTTTGTTTGTTTGTTTGTTTTTAAGACAAACTTTCACTCTATAGCCTAGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTGGCCTGAAACTCACTATGAAGCCAGAGATGACCTTGAACTTCTGATCCTCTCACCTCCATCCCTGAGTGCTG 592
Query 1 -------------------------------------------ATGGCTTGCCTCCATGAGACCCGAACACCCT 31
|||||.|||||||||||.|||||||||||||
Sbjct 593 GGACTGCTGGGCCCGCTGCTCAGCACACCTGGCTCCAGAGGCCATGGCCTGCCTCCATGAAACCCGAACACCCT 666
Query 32 CTCCTTCCTTTGGGGGCTTTGTGTCTACCCTAAGTGAGGCATCCATGCGCAAGCTGGACCCAGACACTTCTGAC 105
|.||||||||||||||||||||||||||.|||||||||||.||.|||||.||||||||.|||||||||||.|||
Sbjct 667 CCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGGCTTCTATGCGAAAGCTGGATCCAGACACTTCAGAC 740
Query 106 TGCACTCCCGAGAAGGACCTGACGCCTACCCAGTGTGTACTTCGAGATGTGGTACCCCTTGGTGGGCAGGGTGG 179
|||||.||||||||.|||||||||||.|||||.|||||||||||||||||.||.||.||.||||||||||||||
Sbjct 741 TGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTGG 814
Query 180 GGGAGGGCCCAGCCCCTCCCCAGGTGGAGAGCCGCCCCCTGAGCCTTTTGCCAACAGTGTCCTGCAGCTACATG 253
.|||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.||||||||||
Sbjct 815 AGGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGCTACATG 888
Query 254 AGCAGGATGCAGGGGGCCCAGGGGGAGCAGCTGGGTCACCTGAGAGTCGGGCATCCAGAGTTCGAGCTGACGAG 327
||||||||.||||.||.|||||||||||..|||||||||||||||||||.|||||.||||||||||||||.|||
Sbjct 889 AGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACCTGAGAGTCGAGCATCTAGAGTTCGAGCTGATGAG 962
Query 328 GTGCGACTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAGGGCCTCTTTGGCTGCCTGCGCCCTGTCTGGACCAT 401
||.||.||||||||||||||||||||||||||||||||.||.||.||||||||||||||||||||||||||.||
Sbjct 963 GTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTCTTTTTGGCTGCCTGCGCCCTGTCTGGACAAT 1036
Query 402 GATTGGCAAAGCCTACTCCACTGAGCACAAGCAGCAGCAGGAAGACCTTTGGGAGGTCCCCTTTGAGGAAATCC 475
|||||||||||||||||||||.||.||||||||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 1037 GATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAAGACCTTTGGGAAGTCCCCTTTGAGGAAATCC 1110
Query 476 TGGACCTGCAGTGGGTGGGCTCAGGGGCCCAGGGTGCTGTCTTCCTGGGGCGCTTCCACGGGGAGGAGGTGGCT 549
||||||||||||||||.|||||||||||.|||||||||||.||||||||.||||||||||||||||||||.|||
Sbjct 1111 TGGACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCTGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGCT 1184
Query 550 GTGAAGAAGGTGCGAGACCTCAAAGAAACCGACATCAAGCA-CTTGCGAAAGCTGAAGCACCCCAACATCATCA 622
|||||||||||.|||||.|||||.||.||.||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1185 GTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATCTT-CGAAAGCTGAAGCACCCCAACATCATCA 1257
Query 623 CTTTCAAGGGTGTGTGCACCCAGGCTCCCTGCTACTGCATCCTCATGGAGTTCTGCGCCCAGGGCCAGCTGTAT 696
|||||||||||||.|||||.|||||.|||||||||||||||||.|||||.||||||||.||.||.|||||.|||
Sbjct 1258 CTTTCAAGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCGCTCAAGGACAGCTATAT 1331
Query 697 GAGGTACTGCGGGCTGGCCGCCCTGTCACCCCCTCCTTACTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT 770
|||||.||..|.||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1332 GAGGTGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT 1405
Query 771 GAACTACCTGCACCTGCACAAGATTATCCACAGGGATCTCAAGTCACCCAACATGCTAATCACCTACGACGATG 844
|||.|||||||||||||||||||||||||||||.||.||.|||||||||||||||||||||||.||||||||||
Sbjct 1406 GAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAGTCACCCAACATGCTAATCACATACGACGATG 1479
Query 845 TGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGGACA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1480 TGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGAACA 1553
Query 919 GTAGCCTGGATGGCCCCTGAGGTGATCCGCAATGAACCTGTGTCTGAGAAGGTCGACATCTGGTCCTTTGGCGT 992
||||||||||||||.|||||.||||||.|.|||||||||||||||||||||||.|||||||||||||||||.||
Sbjct 1554 GTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGTCTGAGAAGGTTGACATCTGGTCCTTTGGGGT 1627
Query 993 GGTGCTATGGGAACTGCTGACTGGTGAGATCCCCTACAAAGACGTAGATTCCTCAGCCATTATCTGGGGTGTGG 1066
|||||||||||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 1628 GGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGATGTAGATTCCTCAGCCATCATCTGGGGTGTGG 1701
Query 1067 GAAGCAACAGTCTCCATCTGCCCGTGCCCTCCAGTTGCCCAGATGGTTTCAAGATCCTGCTTCGCCAGTGCTGG 1140
||||||||||||||||.|||||.||.||||||||.||||||||||||||.||.||.||.|||||||||||||||
Sbjct 1702 GAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAATTCTACTTCGCCAGTGCTGG 1775
Query 1141 AATAGCAAACCACGAAATCGCCCATCATTCCGACAGATCCTGCTGCATCTGGACATTGCCTCAGCTGATGTACT 1214
||.||||||||||||||||||||||||||||||||||||.|||||||.||||||||.|||||.||||||||.||
Sbjct 1776 AACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCTGGACATCGCCTCCGCTGATGTGCT 1849
Query 1215 CTCCACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGGCGGGAA-----------GAAGTAAAACTGCA 1277
|||.||||||||||||||||||||||||||||| ||.|||| |.||| ||
Sbjct 1850 CTCTACACCCCAGGAGACTTACTTTAAGTCCCA---------GCAGGAACCATTCATCATGGAGT-------CA 1907
Query 1278 CTTTGAAAAG------ATTAAGTCAGAAGGGA--CCTGTCTGCACCGCCT-AGAAGAGGAACTGGTGATGAGGA 1342
|...|||.|| .||..|.||.|||.|| ||.| || ||||| | .|||.|..|.||
Sbjct 1908 CAGAGAACAGGGTCCATTTCGGCCACAAGCGAACCCAG-CT-CACCG--TGGGAAAATCATCT----------- 1966
Query 1343 GGAGGGAGGAGC----TCAGACACGCCCTGGACATCAGGGAGCACTATGAAAGGAAGCTGGAGAGAGCCAACAA 1412
|| |||||||.|||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct 1967 ----------GCCCTTTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGAGAGAGCCAACAA 2030
Query 1413 CCTGTATATGGAACTTAATGCCCTCATGTTGCAGCTGGAACTCAAGGAGAGGGAGCTGCTCAGGCGAGAGCAAG 1486
||||||.||||||||.||||||||||||.||||.||.||||||||.||||||||..||||||||||||||||.|
Sbjct 2031 CCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGAGAGCAGG 2104
Query 1487 CTTTAGAGCGGAGGTGCCCAGGCCTGCTGAAGCCACACCCTTCCCGGGGCCCCC-------------------- 1540
|||||||..||.||||.||.||.||.||.|||.||||||||||.|||||||.||
Sbjct 2105 CTTTAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCCTCCTACATGGAAACACTATGGAG 2178
Query 1541 -AGCTTCCCTCCCTCCATGAAA--------GCCAC--------TCGTATTCCTTGTACATAGAGAA-------A 1590
|||| |..||.|||| ||||| ||| || .||.||..|| |
Sbjct 2179 AAGCT-------CATCAAGAAAAGGAACGTGCCACAGAAACTGTCG----CC----CCACAGCAAAAGGCCAGA 2237
Query 1591 TATTTATATAAATNTNATATATATATACATA--------TATATATA-TATATGC-GCCACATAATCAACAGAA 1654
||| |.|.| |.|||.| ||..||.| ||.|||| |||..| ||..
Sbjct 2238 TAT---------TCTCA-------AGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCTA--------AGTG 2287
Query 1655 AGATGGGGC--------TGTCCCAGCCGTAAG---------TCAGGCTCGAGGGAGACTG-------ATCCCC- 1703
.|.|||||| ||||| |||| ||| .||.||.||||.|.| |..|||
Sbjct 2288 GGGTGGGGCTTCCTGGGTGTCC------TAAGGGCCCCCCTTCA-CCTGGAAGGAGTCGGCGTGGCAAGACCCG 2354
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2355 TCACCGAAAGGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATGAGC 2428
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2429 CTGGAGGACTAGGAAGCCCAGGGGGCCTAGGAGTGGGCCCTTCAGCTTGGGATGCTTGCCCCCCTGCTCTCCGT 2502
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2503 GGACTCCACCATGACCTTCTACTCCGAAAGATGTCATCATCATCCCCAGACCTGCTATCAGCAGCGCTGGGAGC 2576
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2577 CCGAGGCCGAGGGGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCCAA 2650
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2651 GTGAGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGAGCTAAAGGGGAACCCCCTCCACCAGTA 2724
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2725 GGGCCTGGAGAAGGTGTGGGGCTGCTGGGAACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAACCGGGCTGG 2798
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2799 GTCCCAGCACTTGACCCCCGCTGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGGTAAAGTATGGGGATG 2872
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2873 TTCTTCTACCCCACACCAAATTAAAATCCTTTAATCTCCTCATGGGTCCAAGTGCTAACTATACCCCAACCCCA 2946
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 2947 CTCAACTATGTATCCTTGCCCAATTCTTAATGACTTACCATTTTTTGACTGGTTTACTTACACCTACCCACACC 3020
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3021 CATCTCTACTGTAGAAACGTGGTATCTCATCTGAAGAAGAAGAAGGAGAGGTAGACAGTGAAGTAGAGCTACCC 3094
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3095 CCAAGTCAAAGGTGGCCTCAGGGCCCGAACATGCGTCAGTCACTATCTACATTCAGCTCAGAGAACCCATCAGA 3168
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3169 TGTGGAGGAAGGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGC 3242
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3243 GACCAGATGAACGATCTGATGACATGTGCTCACAGGGCTCAGAAATTCCACTGGACCTACCTACTTCAGAGGTG 3316
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3317 GTCCCTGAACGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGA 3390
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3391 CTGTGACAGCACTGAATTGGACAACTCCAACAGCATTGATGCCTTGCGGCCCCCAGCCTCCCTTCCTCCATGAA 3464
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3465 AGACACTCTTATTCCTTGTACATAGAGAAATATTTATATAAATAATATATATGCGCCACATAATCAACAGATAG 3538
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3539 ATGGGGCTTTCTTAGCCTTAAGCCAGGCTTGAGAGTGAACGACGCCCCTGACCAATTACCGAATAAGTTCTGGG 3612
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3613 GACACTGGCAGCTGTGGAAATGAATGACTCCGAGTACTACCCTAGAGCTATAAAGAAAGGAAGCTGGCCCCTTC 3686
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3687 TTGCTTCACCCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTCTCTATACTGTCTA 3760
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3761 TCCCTGAACACTGGAGGGGCAGGTAGAGGATTCACTTAAAACTGCACTTTTATTTTCCGTTTACTGTTTACACA 3834
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3835 TTTTGCACTTGGGAGGAGGGAAAGAAACTAAGGCTGGGTCATCCCTCTGAGGTTTCTCAGGTGGCAATGTAACT 3908
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3909 CATTTCTTTGTTCCTGTTTCTCTGCCCAAACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGG 3982
Query 1704 -------------------------------------------------------------------------- 1703
Sbjct 3983 CTGAAGAACTGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCCTGGTAGGGGTGGGGACTGTCATATTGTAA 4056
Query 1704 --------------------------------------------- 1703
Sbjct 4057 CCCCTGTGAACAACCTTGAAATATAACCACTCCATGCAGGCCCAA 4101
