Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13995
- Subject:
- NM_003624.3
- Aligned Length:
- 1706
- Identities:
- 1144
- Gaps:
- 535
Alignment
Query 1 ATGGTGGACCTGGCGAACGAAGAAAAGCCTGCCATTGCTCCGCCCGTCTTTGTGTTTCAGAAGGATAAAGGACA 74
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGACCTGGCGAACGAAGAAAAGCCTGCCATTGCTCCGCCCGTCTTTGTGTTTCAGAAGGATAAAGGACA 74
Query 75 AAA----------------------------------------------------------------------- 77
|||
Sbjct 75 AAAGTCCCCTGCAGAGCAAAAAAACTTGTCGGATTCGGGAGAGGAGCCTCGGGGGGAGGCTGAGGCCCCCCACC 148
Query 78 -------------------------------------------------------------------------- 77
Sbjct 149 ATGGCACGGGTCACCCCGAGTCAGCTGGCGAGCATGCCCTAGAACCTCCTGCCCCTGCTGGCGCCTCAGCCAGC 222
Query 78 -----------------------------------------------------------GAGGTCAGCTGGCGG 92
|||||||||||||||
Sbjct 223 ACTCCTCCGCCTCCCGCTCCTGAAGCCCAGCTTCCTCCTTTTCCGCGAGAACTGGCAGGGAGGTCAGCTGGCGG 296
Query 93 CTCCAGTCCTGAAGGCGGAGAAGATTCTGACAGAGAAGATGGAAATTACTGCCCTCCTGTCAAGCGAGAAAGAA 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTCCAGTCCTGAAGGCGGAGAAGATTCTGACAGAGAAGATGGAAATTACTGCCCTCCTGTCAAGCGAGAAAGAA 370
Query 167 CATCCTCTTTAACCCAGTTCCCACCCTCACAGTCAGAGGAAAGGAGCAGTGGCTTCCGGTTGAAGCCACCAACG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CATCCTCTTTAACCCAGTTCCCACCCTCACAGTCAGAGGAAAGGAGCAGTGGCTTCCGGTTGAAGCCACCAACG 444
Query 241 CTGATCCACGGCCAAGCCCCCAGCGCAGGTCTGCCAAGCCAGAAGCCCAAGGAGCAGCAGCGGAGCGTGCTTCG 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTGATCCACGGCCAAGCCCCCAGCGCAGGTCTGCCAAGCCAGAAGCCCAAGGAGCAGCAGCGGAGCGTGCTTCG 518
Query 315 CCCGGCAGTGTTACAAGCTCCGCAGCCAAAGGCGCTGTCCCAGACTGTCCCCAGCAGTGGCACCAACGGGGTCA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCCGGCAGTGTTACAAGCTCCGCAGCCAAAGGCGCTGTCCCAGACTGTCCCCAGCAGTGGCACCAACGGGGTCA 592
Query 389 GCCTCCCAGCAGACTGCACGGGGGCAGTGCCCGCAGCATCCCCTGACACTGCTGCATGGAGAAGTCCTTCCGAA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCCTCCCAGCAGACTGCACGGGGGCAGTGCCCGCAGCATCCCCTGACACTGCTGCATGGAGAAGTCCTTCCGAA 666
Query 463 GCTGCCGATGAGGTGTGTGCACTTGAGGAGAAAGAGCCCCAGAAAAATGAGTCCAGCAATGCCTCTGAAGAGGA 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCTGCCGA---------------TGAGGAGAAAGAGCCCCAGAAAAATGAGTCCAGCAATGCCTCTGAAGAGGA 725
Query 537 AGCCTGTGAGAAAAAAGACCCCGCCACACAGCAAGCCTTTGTATTTGGGCAGAACTTGAGGGACAGAGTTAAGC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGCCTGTGAGAAAAAAGACCCCGCCACACAGCAAGCCTTTGTATTTGGGCAGAACTTGAGGGACAGAGTTAAGC 799
Query 611 TGATAAATGAGAGCGTGGACGAAGCCGACATGGAGAATGCTGGACACCCCAGCGCAGACACGCCAACCGCAACG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TGATAAATGAGAGCGTGGACGAAGCCGACATGGAGAATGCTGGACACCCCAGCGCAGACACGCCAACCGCAACG 873
Query 685 AACTATTTCCTCCAGTATATCAGTTCCAGTTTAGAGAACTCAACCAATAGTGCCGACGCCTCCAGCAACAAATT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 AACTATTTCCTCCAGTATATCAGTTCCAGTTTAGAGAACTCAACCAATAGTGCCGACGCCTCCAGCAACAAATT 947
Query 759 TGTATTTGGCCAGAACATGAGCGAGCGAGTTTTGAGCCCCCCAAAATTAAACGAGGTCAGTTCAGATGCCAACA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TGTATTTGGCCAGAACATGAGCGAGCGAGTTTTGAGCCCCCCAAAATTAAACGAGGTCAGTTCAGATGCCAACA 1021
Query 833 GGGAAAATGCAGCTGCCGAGTCAGGGTCTGAGTCCTCGTCCCAGGAGGCCACCCCTGAGAAAGAGTCCCTGGCT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GGGAAAATGCAGCTGCCGAGTCAGGGTCTGAGTCCTCGTCCCAGGAGGCCACCCCTGAGAAAGAGTCCCTGGCT 1095
Query 907 GAGTCGGCAGCCGCCTACACCAAGGCAACAGCGCGGAAGTGTTTGTTGGAAAAAGTGGAAGTCATCACCGGGGA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GAGTCGGCAGCCGCCTACACCAAGGCAACAGCGCGGAAGTGTTTGTTGGAAAAAGTGGAAGTCATCACCGGGGA 1169
Query 981 GGAGGCGGAGAGCAATGTGTTACAGATGCAGTGCAAGCTGTTTGTCTTTGACAAGACCTCACAGTCCT------ 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 GGAGGCGGAGAGCAATGTGTTACAGATGCAGTGCAAGCTGTTTGTCTTTGACAAGACCTCACAGTCCTGGGTGG 1243
Query 1049 ------------GGCTTCTCCG-----------------CCACC--------CACAC----------------- 1068
||||.|||.| ||||| |||||
Sbjct 1244 AGAGAGGCCGGGGGCTGCTCAGACTCAATGACATGGCGTCCACCGATGACGGCACACTACAGTCCCGACTAGTG 1317
Query 1069 -----------------CCT--------TCC----CACCCTGCTGTGGGGCCC----------------TGCCT 1097
||| ||| ||||..||||| |||||| .|||.
Sbjct 1318 ATGCGGACCCAGGGGAGCCTGCGACTGATCCTCAACACCAAGCTGT-GGGCCCAGATGCAGATCGACAAGGCCA 1390
Query 1098 TTGTGGGGAGCA---GC----CAGCCCTCTGCCCC--TGCCCAGGGC----------TCC---------CCAAC 1143
..|.|..||||| || |||||.|...|.|| .|.||||||| ||| |||.|
Sbjct 1391 GCGAGAAGAGCATTCGCATCACAGCCATGGACACCGAGGACCAGGGCGTGAAGGTCTTCCTGATCTCGGCCAGC 1464
Query 1144 T--------ATAGG------------------------------CCTGGGACCCCCGCCCA---GCTTGG---- 1172
| |.||| ||||| |||.||.|| ||.|||
Sbjct 1465 TCCAAGGACACAGGTCAGTTGTATGCAGCCCTGCACCACCGCATCCTGG---CCCTGCGCAGCCGCGTGGAGCA 1535
Query 1173 ----------------------------------GGGGCTGC----TCGTACGAGTG----------------- 1191
|||||.|| ||..||||| |
Sbjct 1536 GGAGCAGGAGGCCAAGATGCCCGCGCCTGAGCCTGGGGCAGCCCCATCCAACGAG-GAGGACGACAGCGACGAT 1608
Query 1192 -------------------------------------------------------------------------- 1191
Sbjct 1609 GACGATGTCCTGGCTCCTTCAGGGGCCACCGCAGCTGGTGCTGGTGACGAAGGGGACGGGCAGACGACCGGGAG 1682
Query 1192 ---- 1191
Sbjct 1683 CACA 1686
