Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14163
- Subject:
- XR_001781877.1
- Aligned Length:
- 5725
- Identities:
- 850
- Gaps:
- 4814
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCCGCTCGCCCGCGCGGCAGCGGGTCTCAAGAGCCGAGCGCTTTGCAAGGGCCTTCGCGGGTTGTGGCGGCGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGGTGGAAGAAGAAAGGTGCCACTTTGGCATGAAGATAGACTCACTTAGACGTCAATCTTTTAAGCTGAGTGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATTGTGATTTCCAATAATTGAGGCAGTGGTTCTAAAAGCTGTCTACATTAATGAAAAGAGCAATGTGGCCAGCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGACTAAGCCGCCAGTGTGTACAGCGCGGGCAGGACGACACCGGGTCTCGACGGACTTGTGCATGTTAGCAGTA 296
Query 1 -------------------------------------------------------------ATGGAGACAGATG 13
|||||||||.|||
Sbjct 297 TAGATTTATGTAAGGTGGTTTAAAACTCTGGTCTTTTAAAGTAGTCTTAACTGCTCATAATATGGAGACATATG 370
Query 14 AGAGCCCCTCTCCGCTCCCGTGTGGGCCCGCAGGAGAAGCGGTGATGGAGAGCCGAGCTCGCCCCTTCCAAGCG 87
||||.||||||||.||||||.|||.||||||||||||||||.|||||||||.|||||||.||||||||||||.|
Sbjct 371 AGAGTCCCTCTCCTCTCCCGCGTGAGCCCGCAGGAGAAGCGATGATGGAGAACCGAGCTTGCCCCTTCCAAGTG 444
Query 88 CTGCCCCGTGAGCAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGGTGCAGAGGTAATGGACGTTGGCTCTGG 161
|||||||.|||.||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 445 CTGCCCCATGAACAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTGGCTCTGG 518
Query 162 TGGTGATGGACAGTCCGAACTCCCTGCTGAGGACCCCTTCAACTTCTACGGAGCTTCTCTTCTCTCCAAAGGAT 235
||||||||||||||||||||..|||||.||.|||||.|||||||||||||||||||||||||||||||||||||
Sbjct 519 TGGTGATGGACAGTCCGAACCTCCTGCCGACGACCCATTCAACTTCTACGGAGCTTCTCTTCTCTCCAAAGGAT 592
Query 236 CCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACCGCCCGGCACGCACCT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 593 CCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACTGCCCGGCACGCACCT 666
Query 310 GCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACCGAGAGCTG 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 667 GCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACTGAGAGCTG 740
Query 384 CAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGCAGAGCGCGACGTGCGGGCGGAGTGCGGTCTGCTCCTTA 457
|||||||||||||||||||||||||||||||||||.|||.|||..|...|||.|.|||||.||.|.||||||||
Sbjct 741 CAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGTAGAACGCAGCACTCGGCCTGAGTGTGGCCAGCTCCTTA 814
Query 458 GCCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTGACGGGGTAGGCATAGGGGGTGAG 531
|.||||||||||||||||||||||||||||||||||||||||||||||||.|.|||||||||.|||||||||||
Sbjct 815 GTCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTAATGGGGTAGGCCTAGGGGGTGAG 888
Query 532 AGTGCTGATAAGAAGGATGAGGAGAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCGATGAGTT 605
|||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGTGCAGATAAGAAGGATGAGGAAAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCGATGAGTT 962
Query 606 AGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAGCAGGCAGGTTCACGGCTAAAGCAATCGTTCAGA 679
||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||.|
Sbjct 963 AGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAACAGGCGGGTTCACGGCTAAAGCAATCGTTCAAA 1036
Query 680 GAGACAGAGTGGATGAAGAGGCCTTGAATTTCCCCTACGAGGATGACTTTGACAACGATGTGGATGCTCTGCTG 753
||||||||||||||||||||||||||||||||.||||.|||||||||||||||||.||||||||.|||.|.||.
Sbjct 1037 GAGACAGAGTGGATGAAGAGGCCTTGAATTTCTCCTATGAGGATGACTTTGACAATGATGTGGACGCTTTACTA 1110
Query 754 GAAGAAGGCCTTTGTGCCCCCAAAAAGAGGCGAACAGAGGAAAAATATGGCGGAGACAGCGACCATCCGTCCGA 827
||||||||.||.|||||.|||||.||||||||||..|||||||||||||||||||||||.||.|||||.||.||
Sbjct 1111 GAAGAAGGTCTCTGTGCTCCCAAGAAGAGGCGAATGGAGGAAAAATATGGCGGAGACAGTGATCATCCATCTGA 1184
Query 828 TGGAGAGACAAGTGTGCAGCCGATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGCCCACCTACAG 901
|||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1185 TGGAGAGACAAGTGTACAGCCAATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGTCCACCTACAG 1258
Query 902 AGCC--TGTTCTG------------------------------------------------------------- 912
|||| || .|||
Sbjct 1259 AGCCATTG-CCTGATGGATGGATCATGACTTTTCATAATTCTGGAGTCCCTGTATACCTGCACAGAGAGTCTCG 1331
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1332 AGTGGTCACTTGGTCCAGACCCTACTTCTTGGGAACAGGAAGCATACGGAAACATGATCCTCCTCTAAGCAGTA 1405
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1406 TCCCCTGCCTACATTATAAGAAAATGAAGGACAATGAGGAACGAGAACAAAACTGTGATCTTGCCCCCAGTGGA 1479
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1480 GAGGTGTCACCTGTCAAGCCCTTGGGTCGGTCTGCAGAGTTGGATTTCCCTCTGGAAGAGCCTGACTCCATGGG 1553
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1554 TGGAGACTCAGGGTCCATGGATGAGAAGGACCCATTGGGGGCTGAGGCAGCCGCTGGAGCCCTGGGACAAGTGA 1627
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1628 AGGCTAAAGTTGAGGTGTGCAAAGATGAATCAGTTGATCTGGAGGAATTTCGTAATTACCTTGAGAAGCGTTTT 1701
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1702 GACTTTGAACAAGTAACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGTCAGTTCAACCGTGAGATGAAGCG 1775
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1776 GAAGCAGGCCGAGTCAGAGAGGCCCATCCTGCCAGCCAACCAGAAGCTGATCACTCTATCTGTACAAGATGCAC 1849
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1850 CCACAAAGAAAGAGTTTGTCATCAATCCCAATGGGAAGTCTGAGGTTTGCATCCTGCACGAATACATGCAGCGT 1923
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1924 GTCCTCAAGGTCCGCCCTGTTTATAATTTCTTTGAATGTGAGAATCCAAGTGAGCCTTTTGGTGCCTCCGTGAC 1997
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1998 CATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGCCA 2071
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2072 CCCTGGAAATTCTCATCCCTGACTTTGTTAAACAGACCTCTGAGGAGAAGCCTAAAGACAGTGAAGAACTGGAG 2145
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2146 ATTCTCTTCTGCTTTCAAGAAGCTCTGTTTGGCCTTCAGTTGGATGAGTCTACAAACAGATGCTATTTTAACCA 2219
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2220 CATCAGTATTGAGGATTCACGAGTCTATGAGCTGACAAGCAAGGCTGGGCTGTTGTCTCCATATCAGATCCTCC 2293
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2294 ATGAGTGCCTTAAAAGAAACCATGGAATGGGTGACACATCCATCAAGTTTGAAGTGGTTCCTGGGAAAAACCAG 2367
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2368 AAGAGTGAATATGTTATGGCATGCGGCAAACACACAGTGCGCGGGTGGTGTAAGAATAAACGAGTTGGGAAACA 2441
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2442 ATTAGCATCTCAGAAAATCCTTCAGCTACTGCACCCACATGTCAAGAACTGGGGTTCCTTACTACGCATGTATG 2515
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2516 GTCGTGAGAGCAGCAAAATGGTCAAGCAGGTAACCAGACTGTCACATCTTTTGGCAGTTGCTCTGCTTCCCTGT 2589
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2590 TTTTGCTTTGGCTTGGGGCTTGCTGTCAAGGTCAGGCTTGGCAGCACTACTTTTAATTATGACTGTCTCTGCTG 2663
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2664 TGCTGTGCTGTGCTATGGAAGTGATTGTGCAAGCCAAGGGTGGGAGTACCCAAGCCACATTTTCCTCATGAATC 2737
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2738 TGCCAGGCAGTTAAGTATGAACCATTAGGGAGCAGTCCTAGACTATCAGGCCTGACACAAACCAGACAGTAGAT 2811
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2812 GCAGGCAGTGAACACTACCTGATGTTGAATTGTGTGAAGGCTTGCAAACCAGCCCTTTGGCAGTCCTCAAGACT 2885
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2886 GTATCCTTGTTTAGTTGAAGGTTCTCAGTGACTTAAAGAATATGGGTATTATCTGTTTTGTTTCTGAGGGTTTT 2959
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2960 GCCCAGATCTCAGAATTTAAATAAGTCTAAACCTAATGGGTATGGGAAGTAATGGGAAATTATGTTGGGTAGTG 3033
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3034 ATGGAACTCAGCTGTATCACAAGCATTTTTTTACATTTTCCCCTAATATATGCCGAAACTACCTGGATCATCAG 3107
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3108 GATCTCATTGTTTAAACGAGTACAGGTAGAGACCCTGAAGTCTGTGCTCTGGACCCTTGAGCTACCCTGCCTTG 3181
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3182 AGCTGAGCTAATAGTCTAGAGCAACGAAGCACCCCTTCAGATTCTCCAAGACTCAAACTTGTCCCTGTCCTTGC 3255
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3256 TCAAGGCAGGAGGAGTCCAGGAGCCACATGGAGAACGTAAATAATATAAGAGTACTTCTTTTTTCTGATTCCTC 3329
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3330 TCCCTCCTACTGCTGGGGATCATACATGGGGCTTTGTACAGGCCAAACAAGGACTGAGTTGCATCTTCAGCCTG 3403
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3404 AAAAGAAGCATTTTTCATGAGTTGAAATGTAGGTACCGTGTAGGTACGTAGTCTGGGACTGAGACAGAGGGAAC 3477
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3478 GTTGCTGCAACCATGGACAGAGGTTTCCTTCAACTGGAGAGTGAATGGCCCTTGTCTGGCACAGGAGTTCTGGC 3551
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3552 ATTCTAAGACATAGTGAGCATCCTTACTGTGGCCTCCAAGCCAAGAAGGGAAGAGAACCAAAGAGAACAGCTGG 3625
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3626 GCAGACTGTTTTGGTTGTGTTATGTCTCAGTTGGCTTCAGCCACTGTCAGAGGGTTCCTGGCATAGTGAGTACT 3699
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3700 TGACTTTCATACTCAGCTAGTAAACACACAGAGGTGTGATCATGGAGGAAGGAAGGAACTGTCTGGGAGACCAG 3773
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3774 GGAGCACAGGGCTGTGCTTATACCCTATATTTATATGTCAGCTGCAAATGCTTTATCACAGGTAGGCCACTGGT 3847
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3848 GTGGACTTGTGCCTTGCCAAGCCCTTGCACTCTTGATTTGGGTGGATACTGCTACTTGAGCATACTGCTACTTG 3921
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3922 GCAGTTCTGAGAGCAGGCTTTGGGTCCCTAGGAGACCTCTGACAAGAGTGTGATAGAGCTACAGCAGTATGCCA 3995
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3996 AGAAGAACAGGCCCAACCTTCACATCCTGAGCAAGCTACAAGAAGAGATGAAGAGGCTGGCTGCAGAGCGGGAG 4069
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4070 GAGACTCGGAAGAAACCCAAGATGTCAATTGTAGCATCTGCCCAGCCTGGTGGTGAGCCCTTGTGCACAGTCGA 4143
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4144 TGTATGAGGTAGGCAGCATGGGCCAACAGTGCTACCCAGGAGAGACCATCAGCCACACATCATCACTCTGCAGC 4217
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4218 TCCAGGCCTCCAACCTAAGTTCCTTCCCTGTGGCAGGGTCTGGGCTCTGGCTCTGGCACATGGGGACAGCTGTG 4291
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4292 ACTACACAGTACACATGCAAAGAAGCAGTTCTGGACAAGCTGCTCTCAATGTGACTGGATATACTTAAGGATCA 4365
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4366 GTCATAAGTTAACTGCACAAGTGGAAGCTGATAGACAGCTGTAGATCCTGCTTGTATGTATCTGCTGCGGACCG 4439
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4440 TTTTTATGAAGGTTTTCATTAATTTTAGTACACTATATGCACTGACAAGAAGTAATACTTCGTTGATAGATGAG 4513
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4514 ATGACCAGGTTTTATAGCTTTGGCTGGCCTATGATGCCAGGTAGCCCCTTTGCTATGGTTCTTTCTGGTGGAGC 4587
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4588 CACTGAGACTTGGTCAGAAGATGCAGGTATCCTGTCCTGTAGAATTACCTGCTTTGTGTGTTTTGCATTTTCTT 4661
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4662 CTGAAAAAGTTATAACAGAAAGGAATATTTCAGGCTATTTTGGCTTAAAATAAAACAAAATTTTAGCACCAGAA 4735
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4736 ATACTCTTCCGAGATTGCAGTGAAGATACTGAGTGTTAGTCCGATTGATCCTTTTTCTTATGAAGTCTTAATGT 4809
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4810 CCTAACAGCCGTCTTCTGGATACTGAAGCTTCCACCTTCGATAAACTTAGCAACAATTTTTTACAGAGATTTTT 4883
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4884 GCACAACCAAGCCCATCTGTTCATCAATTTTTAAAGCTTTTATGATGTTTTAAAATTTGGAAAGAAACTTTTAC 4957
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4958 AGTAAGAATGAAAGATGCATTTCAACAGATGAATATGCATAAATAGGGAACTGGCCTTCAATGTAGCCCATCAC 5031
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5032 TGACCAAGAGCTGCCTGGCACATTGTACACGATAAGTAGTTATGGTGTTTTTTGATCTCAAGGATAGCTGCTCT 5105
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5106 GTGCAGCCAGGCCTGATTGCAGGTTTTTGTCTACCTATGCTCATTGGATAGCCCCTGTAAATGGGTATTGAGTA 5179
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5180 GAGGGGTATTCAGAGCCCTATTACCTGTTCAGAGGGGCTACACTCTACATCCTCAGTGTCTCTAACCATGTACC 5253
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5254 TGAAGATACATGGGTGACATGTGCTGTTAGAAAGATAAGATGGCAACTGTGGGCCTCCCAACAGCATCTTCCTC 5327
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5328 CTCCTTAATCATGTGTGTGACAGCAGTTAATGTTTATGTTAATCTTGGCAAAAAGAACCCTTAATTCAAGTTGG 5401
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5402 TAGACTTGGACACTTGATTCTTTTCTGCCTCCCATTCAGTTGTGTTCAGTCTTTTGACTAACCATTGCCCTTAA 5475
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5476 AACATACTTAACATTGAAAAAGCATATGGTAATGGTGGTATCTCTGCAGCCTCACCGACCCAGGCACTGTCAAC 5549
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5550 AGGTGCTGCCACACATTCCTGGTCTCCAGTGCCCTCCCTGTCTCTTACAGGTGGGTCTTATATGTACAGTCATG 5623
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5624 CTGCAAGGGTGGGGAGCCTGTGCTGATGTGCTTCTGTGTGTTGGCCAAGGCTGTAGGGTGTACCCTGATGGTCT 5697
Query 913 --------------------------- 912
Sbjct 5698 GAACACATAAAACTGTCCAAAAGGGAA 5724
