Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14163
- Subject:
- XR_001781878.1
- Aligned Length:
- 5738
- Identities:
- 850
- Gaps:
- 4827
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGGCCCGCCTTCCGCTCGCCCGCGCGGCAGCGGGTCTCAAGAGCCGAGCGCTTTGCAAGGGCCTTCGCGGGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCGGCGCCGGGGTCGGTGAGGGTCGACCGGCTGTGGTCGGGCTGCGGGCGGCTCGGGCAGGTCGCGGGCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACAGGTGGAAGAAGAAAGGTGCCACTTTGGCATGAAGATAGACTCACTTAGACGTCAATCTTTTAAGCTGAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCATTGTGATTTCCAATAATTGAGGCAGTGGTTCTAAAAGCTGTCTACATTAATGAAAAGAGCAATGTGGCCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTGACTAAGCCGCCAGTGTGTACAGCGCGGGCAGGACGACACCGGGTCTCGACGGACTTGTGCATGTTAGCAG 370
Query 1 ---------------------------------------------------------------ATGGAGACAGA 11
|||||||||.|
Sbjct 371 TATAGATTTATGTAAGGTGGTTTAAAACTCTGGTCTTTTAAAGTAGTCTTAACTGCTCATAATATGGAGACATA 444
Query 12 TGAGAGCCCCTCTCCGCTCCCGTGTGGGCCCGCAGGAGAAGCGGTGATGGAGAGCCGAGCTCGCCCCTTCCAAG 85
||||||.||||||||.||||||.|||.||||||||||||||||.|||||||||.|||||||.||||||||||||
Sbjct 445 TGAGAGTCCCTCTCCTCTCCCGCGTGAGCCCGCAGGAGAAGCGATGATGGAGAACCGAGCTTGCCCCTTCCAAG 518
Query 86 CGCTGCCCCGTGAGCAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGGTGCAGAGGTAATGGACGTTGGCTCT 159
.||||||||.|||.||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 519 TGCTGCCCCATGAACAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTGGCTCT 592
Query 160 GGTGGTGATGGACAGTCCGAACTCCCTGCTGAGGACCCCTTCAACTTCTACGGAGCTTCTCTTCTCTCCAAAGG 233
||||||||||||||||||||||..|||||.||.|||||.|||||||||||||||||||||||||||||||||||
Sbjct 593 GGTGGTGATGGACAGTCCGAACCTCCTGCCGACGACCCATTCAACTTCTACGGAGCTTCTCTTCTCTCCAAAGG 666
Query 234 ATCCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACCGCCCGGCACGCAC 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 667 ATCCTTCTCTAAGGGCCGCCTCCTCATAGACCCGAACTGTAGTGGCCACAGCCCGCGCACTGCCCGGCACGCAC 740
Query 308 CTGCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACCGAGAGC 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 741 CTGCGGTCCGGAAGTTCTCCCCTGACCTTAAGTTGCTTAAGGATGTAAAGATTAGCGTGAGCTTTACTGAGAGC 814
Query 382 TGCAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGCAGAGCGCGACGTGCGGGCGGAGTGCGGTCTGCTCCT 455
|||||||||||||||||||||||||||||||||||||.|||.|||..|...|||.|.|||||.||.|.||||||
Sbjct 815 TGCAGGAGTAAGGACAGGAAGGTGCTGTACACAGGAGTAGAACGCAGCACTCGGCCTGAGTGTGGCCAGCTCCT 888
Query 456 TAGCCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTGACGGGGTAGGCATAGGGGGTG 529
|||.||||||||||||||||||||||||||||||||||||||||||||||||.|.|||||||||.|||||||||
Sbjct 889 TAGTCCTGTCAGTGGGGACGTGCATGCTTGTCCCTTTGGCGGGAGTGTTGGTAATGGGGTAGGCCTAGGGGGTG 962
Query 530 AGAGTGCTGATAAGAAGGATGAGGAGAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCGATGAG 603
|||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGAGTGCAGATAAGAAGGATGAGGAAAATGAGCTGGATCAGGAAAAGAGAGTGGAGTATGCAGTGCTCGATGAG 1036
Query 604 TTAGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAGCAGGCAGGTTCACGGCTAAAGCAATCGTTCA 677
||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||
Sbjct 1037 TTAGAAGATTTTACTGACAATTTGGAGCTAGATGAAGAAGGAACAGGCGGGTTCACGGCTAAAGCAATCGTTCA 1110
Query 678 GAGAGACAGAGTGGATGAAGAGGCCTTGAATTTCCCCTACGAGGATGACTTTGACAACGATGTGGATGCTCTGC 751
.|||||||||||||||||||||||||||||||||.||||.|||||||||||||||||.||||||||.|||.|.|
Sbjct 1111 AAGAGACAGAGTGGATGAAGAGGCCTTGAATTTCTCCTATGAGGATGACTTTGACAATGATGTGGACGCTTTAC 1184
Query 752 TGGAAGAAGGCCTTTGTGCCCCCAAAAAGAGGCGAACAGAGGAAAAATATGGCGGAGACAGCGACCATCCGTCC 825
|.||||||||.||.|||||.|||||.||||||||||..|||||||||||||||||||||||.||.|||||.||.
Sbjct 1185 TAGAAGAAGGTCTCTGTGCTCCCAAGAAGAGGCGAATGGAGGAAAAATATGGCGGAGACAGTGATCATCCATCT 1258
Query 826 GATGGAGAGACAAGTGTGCAGCCGATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGCCCACCTAC 899
|||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1259 GATGGAGAGACAAGTGTACAGCCAATGATGACCAAGATTAAAACAGTGCTCAAAAGTCGTGGCCGTCCACCTAC 1332
Query 900 AGAGCC--TGTTCTG----------------------------------------------------------- 912
|||||| || .|||
Sbjct 1333 AGAGCCATTG-CCTGATGGATGGATCATGACTTTTCATAATTCTGGAGTCCCTGTATACCTGCACAGAGAGTCT 1405
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1406 CGAGTGGTCACTTGGTCCAGACCCTACTTCTTGGGAACAGGAAGCATACGGAAACATGATCCTCCTCTAAGCAG 1479
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1480 TATCCCCTGCCTACATTATAAGAAAATGAAGGACAATGAGGAACGAGAACAAAACTGTGATCTTGCCCCCAGTG 1553
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1554 GAGAGGTGTCACCTGTCAAGCCCTTGGGTCGGTCTGCAGAGTTGGATTTCCCTCTGGAAGAGCCTGACTCCATG 1627
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1628 GGTGGAGACTCAGGGTCCATGGATGAGAAGGACCCATTGGGGGCTGAGGCAGCCGCTGGAGCCCTGGGACAAGT 1701
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1702 GAAGGCTAAAGTTGAGGTGTGCAAAGATGAATCAGTTGATCTGGAGGAATTTCGTAATTACCTTGAGAAGCGTT 1775
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1776 TTGACTTTGAACAAGTAACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGTCAGTTCAACCGTGAGATGAAG 1849
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1850 CGGAAGCAGGCCGAGTCAGAGAGGCCCATCCTGCCAGCCAACCAGAAGCTGATCACTCTATCTGTACAAGATGC 1923
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1924 ACCCACAAAGAAAGAGTTTGTCATCAATCCCAATGGGAAGTCTGAGGTTTGCATCCTGCACGAATACATGCAGC 1997
Query 913 -------------------------------------------------------------------------- 912
Sbjct 1998 GTGTCCTCAAGGTCCGCCCTGTTTATAATTTCTTTGAATGTGAGAATCCAAGTGAGCCTTTTGGTGCCTCCGTG 2071
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2072 ACCATTGATGGTGTGACTTACGGATCTGGAACTGCAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGC 2145
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2146 CACCCTGGAAATTCTCATCCCTGACTTTGTTAAACAGACCTCTGAGGAGAAGCCTAAAGACAGTGAAGAACTGG 2219
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2220 AGTATTTTAACCACATCAGTATTGAGGATTCACGAGTCTATGAGCTGACAAGCAAGGCTGGGCTGTTGTCTCCA 2293
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2294 TATCAGATCCTCCATGAGTGCCTTAAAAGAAACCATGGAATGGGTGACACATCCATCAAGTTTGAAGTGGTTCC 2367
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2368 TGGGAAAAACCAGAAGAGTGAATATGTTATGGCATGCGGCAAACACACAGTGCGCGGGTGGTGTAAGAATAAAC 2441
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2442 GAGTTGGGAAACAATTAGCATCTCAGAAAATCCTTCAGCTACTGCACCCACATGTCAAGAACTGGGGTTCCTTA 2515
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2516 CTACGCATGTATGGTCGTGAGAGCAGCAAAATGGTCAAGCAGGTAACCAGACTGTCACATCTTTTGGCAGTTGC 2589
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2590 TCTGCTTCCCTGTTTTTGCTTTGGCTTGGGGCTTGCTGTCAAGGTCAGGCTTGGCAGCACTACTTTTAATTATG 2663
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2664 ACTGTCTCTGCTGTGCTGTGCTGTGCTATGGAAGTGATTGTGCAAGCCAAGGGTGGGAGTACCCAAGCCACATT 2737
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2738 TTCCTCATGAATCTGCCAGGCAGTTAAGTATGAACCATTAGGGAGCAGTCCTAGACTATCAGGCCTGACACAAA 2811
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2812 CCAGACAGTAGATGCAGGCAGTGAACACTACCTGATGTTGAATTGTGTGAAGGCTTGCAAACCAGCCCTTTGGC 2885
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2886 AGTCCTCAAGACTGTATCCTTGTTTAGTTGAAGGTTCTCAGTGACTTAAAGAATATGGGTATTATCTGTTTTGT 2959
Query 913 -------------------------------------------------------------------------- 912
Sbjct 2960 TTCTGAGGGTTTTGCCCAGATCTCAGAATTTAAATAAGTCTAAACCTAATGGGTATGGGAAGTAATGGGAAATT 3033
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3034 ATGTTGGGTAGTGATGGAACTCAGCTGTATCACAAGCATTTTTTTACATTTTCCCCTAATATATGCCGAAACTA 3107
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3108 CCTGGATCATCAGGATCTCATTGTTTAAACGAGTACAGGTAGAGACCCTGAAGTCTGTGCTCTGGACCCTTGAG 3181
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3182 CTACCCTGCCTTGAGCTGAGCTAATAGTCTAGAGCAACGAAGCACCCCTTCAGATTCTCCAAGACTCAAACTTG 3255
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3256 TCCCTGTCCTTGCTCAAGGCAGGAGGAGTCCAGGAGCCACATGGAGAACGTAAATAATATAAGAGTACTTCTTT 3329
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3330 TTTCTGATTCCTCTCCCTCCTACTGCTGGGGATCATACATGGGGCTTTGTACAGGCCAAACAAGGACTGAGTTG 3403
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3404 CATCTTCAGCCTGAAAAGAAGCATTTTTCATGAGTTGAAATGTAGGTACCGTGTAGGTACGTAGTCTGGGACTG 3477
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3478 AGACAGAGGGAACGTTGCTGCAACCATGGACAGAGGTTTCCTTCAACTGGAGAGTGAATGGCCCTTGTCTGGCA 3551
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3552 CAGGAGTTCTGGCATTCTAAGACATAGTGAGCATCCTTACTGTGGCCTCCAAGCCAAGAAGGGAAGAGAACCAA 3625
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3626 AGAGAACAGCTGGGCAGACTGTTTTGGTTGTGTTATGTCTCAGTTGGCTTCAGCCACTGTCAGAGGGTTCCTGG 3699
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3700 CATAGTGAGTACTTGACTTTCATACTCAGCTAGTAAACACACAGAGGTGTGATCATGGAGGAAGGAAGGAACTG 3773
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3774 TCTGGGAGACCAGGGAGCACAGGGCTGTGCTTATACCCTATATTTATATGTCAGCTGCAAATGCTTTATCACAG 3847
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3848 GTAGGCCACTGGTGTGGACTTGTGCCTTGCCAAGCCCTTGCACTCTTGATTTGGGTGGATACTGCTACTTGAGC 3921
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3922 ATACTGCTACTTGGCAGTTCTGAGAGCAGGCTTTGGGTCCCTAGGAGACCTCTGACAAGAGTGTGATAGAGCTA 3995
Query 913 -------------------------------------------------------------------------- 912
Sbjct 3996 CAGCAGTATGCCAAGAAGAACAGGCCCAACCTTCACATCCTGAGCAAGCTACAAGAAGAGATGAAGAGGCTGGC 4069
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4070 TGCAGAGCGGGAGGAGACTCGGAAGAAACCCAAGATGTCAATTGTAGCATCTGCCCAGCCTGGTGGTGAGCCCT 4143
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4144 TGTGCACAGTCGATGTATGAGGTAGGCAGCATGGGCCAACAGTGCTACCCAGGAGAGACCATCAGCCACACATC 4217
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4218 ATCACTCTGCAGCTCCAGGCCTCCAACCTAAGTTCCTTCCCTGTGGCAGGGTCTGGGCTCTGGCTCTGGCACAT 4291
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4292 GGGGACAGCTGTGACTACACAGTACACATGCAAAGAAGCAGTTCTGGACAAGCTGCTCTCAATGTGACTGGATA 4365
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4366 TACTTAAGGATCAGTCATAAGTTAACTGCACAAGTGGAAGCTGATAGACAGCTGTAGATCCTGCTTGTATGTAT 4439
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4440 CTGCTGCGGACCGTTTTTATGAAGGTTTTCATTAATTTTAGTACACTATATGCACTGACAAGAAGTAATACTTC 4513
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4514 GTTGATAGATGAGATGACCAGGTTTTATAGCTTTGGCTGGCCTATGATGCCAGGTAGCCCCTTTGCTATGGTTC 4587
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4588 TTTCTGGTGGAGCCACTGAGACTTGGTCAGAAGATGCAGGTATCCTGTCCTGTAGAATTACCTGCTTTGTGTGT 4661
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4662 TTTGCATTTTCTTCTGAAAAAGTTATAACAGAAAGGAATATTTCAGGCTATTTTGGCTTAAAATAAAACAAAAT 4735
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4736 TTTAGCACCAGAAATACTCTTCCGAGATTGCAGTGAAGATACTGAGTGTTAGTCCGATTGATCCTTTTTCTTAT 4809
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4810 GAAGTCTTAATGTCCTAACAGCCGTCTTCTGGATACTGAAGCTTCCACCTTCGATAAACTTAGCAACAATTTTT 4883
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4884 TACAGAGATTTTTGCACAACCAAGCCCATCTGTTCATCAATTTTTAAAGCTTTTATGATGTTTTAAAATTTGGA 4957
Query 913 -------------------------------------------------------------------------- 912
Sbjct 4958 AAGAAACTTTTACAGTAAGAATGAAAGATGCATTTCAACAGATGAATATGCATAAATAGGGAACTGGCCTTCAA 5031
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5032 TGTAGCCCATCACTGACCAAGAGCTGCCTGGCACATTGTACACGATAAGTAGTTATGGTGTTTTTTGATCTCAA 5105
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5106 GGATAGCTGCTCTGTGCAGCCAGGCCTGATTGCAGGTTTTTGTCTACCTATGCTCATTGGATAGCCCCTGTAAA 5179
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5180 TGGGTATTGAGTAGAGGGGTATTCAGAGCCCTATTACCTGTTCAGAGGGGCTACACTCTACATCCTCAGTGTCT 5253
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5254 CTAACCATGTACCTGAAGATACATGGGTGACATGTGCTGTTAGAAAGATAAGATGGCAACTGTGGGCCTCCCAA 5327
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5328 CAGCATCTTCCTCCTCCTTAATCATGTGTGTGACAGCAGTTAATGTTTATGTTAATCTTGGCAAAAAGAACCCT 5401
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5402 TAATTCAAGTTGGTAGACTTGGACACTTGATTCTTTTCTGCCTCCCATTCAGTTGTGTTCAGTCTTTTGACTAA 5475
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5476 CCATTGCCCTTAAAACATACTTAACATTGAAAAAGCATATGGTAATGGTGGTATCTCTGCAGCCTCACCGACCC 5549
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5550 AGGCACTGTCAACAGGTGCTGCCACACATTCCTGGTCTCCAGTGCCCTCCCTGTCTCTTACAGGTGGGTCTTAT 5623
Query 913 -------------------------------------------------------------------------- 912
Sbjct 5624 ATGTACAGTCATGCTGCAAGGGTGGGGAGCCTGTGCTGATGTGCTTCTGTGTGTTGGCCAAGGCTGTAGGGTGT 5697
Query 913 ---------------------------------------- 912
Sbjct 5698 ACCCTGATGGTCTGAACACATAAAACTGTCCAAAAGGGAA 5737
