Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14270
Subject:
XR_001781569.1
Aligned Length:
2133
Identities:
767
Gaps:
1295

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTCCAGACTACAGCTCCCGGCATGCCCTGCACCTGGTACTCGCCCGCGGCGTGCGGAGGGAAGGATGCAGACA  74

Query    1  ------------ATGAGGATGGAGGCCGGTGAGGCAGCGCCGCCGGCGGGGGCGGGCGGCCGCGCCGCAGGCGG  62
                        |||||||||||||||||.|||||||||||.||||.||||||||||||||||.|||..|||||
Sbjct   75  ACGCGGCCGGCGATGAGGATGGAGGCCGGGGAGGCAGCGCCACCGGTGGGGGCGGGCGGCCGCCCCGGGGGCGG  148

Query   63  CTGGGGCAAGTGGGTGCGGCTCAACGTGGGGGGCACGGTGTTCCTGACCACCCGGCAGACGCTGTG-CGGCGAG  135
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||||| ||| |||
Sbjct  149  CTGGGGCAAGTGGGTGCGGCTGAACGTGGGGGGCACGGTGTTCCTGACCACCCGCCAGACGCTGTGTCGG-GAG  221

Query  136  CAGAAGTCCTTCCTCAGCCGCCTGTGCCAGGGGGAAGAGCTGCAGTCGGACCGGGATGAGACCGGGGCCTACCT  209
            ||||||||||||||||||||||||||.|||||.||||||||.||.||||||.||||||||||||||||||||||
Sbjct  222  CAGAAGTCCTTCCTCAGCCGCCTGTGTCAGGGCGAAGAGCTTCAATCGGACAGGGATGAGACCGGGGCCTACCT  295

Query  210  CATTGACCGTGACCCCACCTACTTCGGGCCCATCCTGAACTTCCTCCGGCATGGCAAGCTGGTGCTGGACAAGG  283
            |||||||||||||||||||||||||||||||||||||||.||||||.|||||||.||..|||||||||||||||
Sbjct  296  CATTGACCGTGACCCCACCTACTTCGGGCCCATCCTGAATTTCCTCAGGCATGGAAAATTGGTGCTGGACAAGG  369

Query  284  ACATGGCTGAGGAGGGGGTCCTGGAGGAAGCCGAGTTCTACAACATCGGCCCGCTGATCCGCATCATCAAAGAC  357
            |||||||.|||||||||||||||||||||||.||||||||||||||.||.||.|||||.||.||||||||||||
Sbjct  370  ACATGGCCGAGGAGGGGGTCCTGGAGGAAGCAGAGTTCTACAACATTGGTCCTCTGATTCGAATCATCAAAGAC  443

Query  358  CGGATGGAAGAGAAGGACTACACGGTCACCCAGGTCCCACCCAAGCATGTGTACCGCGTGCTGCAGTGCCAGGA  431
            .|||||||.|||||.||||||||.||..|||||||.|||||.||||||||.|||||.||||||||||||||.||
Sbjct  444  AGGATGGAGGAGAAAGACTACACAGTGGCCCAGGTGCCACCTAAGCATGTATACCGAGTGCTGCAGTGCCAAGA  517

Query  432  GGAGGAGCTCACGCAAATGGTCTCAACCATGTCTGATGGCTGGCGCTTCGAGCAGCTGGTGAACATCGGCTCGT  505
            ||||||||||||.||.|||||.||.||.|||||.||.|||||||||||||||||||||||||||||||||||.|
Sbjct  518  GGAGGAGCTCACACAGATGGTATCCACTATGTCCGACGGCTGGCGCTTCGAGCAGCTGGTGAACATCGGCTCCT  591

Query  506  CCTACAACTACGGCAGCGAGGACCAGGCAGAGTTCCTGTGTGTGGTGTCCAAGGAGCTCCACAGCACCCCAAAC  579
            ||||||||||.||.||.|||||||||||.||||||||||||||||||||.|||||||||||||||.|||||.||
Sbjct  592  CCTACAACTATGGGAGTGAGGACCAGGCCGAGTTCCTGTGTGTGGTGTCTAAGGAGCTCCACAGCTCCCCACAC  665

Query  580  GGGCTGAGCTCAGAGTCCAGCCGCAAAACCAAGAGCACGGAGGAGCAGCTGGAGGAGCAGCAGCAGCAGGAGGA  653
            ||.||||||||.|||||||..|||||..||                                            
Sbjct  666  GGCCTGAGCTCCGAGTCCACTCGCAAGGCC--------------------------------------------  695

Query  654  GGAGGTGGAGGAGGTGGAGGTGGAACAGGTGCAGGTGGAGGCAGATGCACAGGAGAAAGCCCAGTCATCTCAGG  727
                                                                    ||||||.|||||||||||
Sbjct  696  --------------------------------------------------------AAGCCCTGTCATCTCAGG  713

Query  728  ATCCCGCTAACCTTTTCTCCCTCCCACCACTG---CCTCCTCCTCCGCTTCCCGCTGGAGG-------------  785
            ||||||||||||||||||||||||||||||.|   |||||||||||||||||.||||||||             
Sbjct  714  ATCCCGCTAACCTTTTCTCCCTCCCACCACCGCCTCCTCCTCCTCCGCTTCCTGCTGGAGGTCCTGCTTCATCT  787

Query  786  ---------------------------------------------TTCCC------------------------  790
                                                         |||||                        
Sbjct  788  TCATCCACCTCCTCTTCCTCCTGGATCTCATCTGCACCCTGCCTCTTCCCTCTCTGCCCCTGCCCAGGTTTCCT  861

Query  791  --------------------------------------------------------------------------  790
                                                                                      
Sbjct  862  CTCCGCCTGCTCCCGTCTCCACCCTGGGGCTGCCCTAGTCCCAGTCTCCCGCGCCCTCTCCCCAAGCCCCCTCG  935

Query  791  --------------------------------------------------------------------------  790
                                                                                      
Sbjct  936  CCCTGCATCCCCAAGCATCCTGCCTGCCGCCTCCTTCGCCCCTTCCAGCCCCTCCTGCCTCCTGGCCTGGGGAG  1009

Query  791  --------------------------------------------------------------------------  790
                                                                                      
Sbjct 1010  GAGGGGCGTGGCCGCATCTGCTCTTTGTCCTCCAACCCAGCAGAGCACCTCTGAGGCTGGCCTTGGCCACAGGC  1083

Query  791  -----------------------------------------------GTCCGCACCCTCTCAGACCTGAGGCTG  817
                                                           ||||||||||||.||||||..||.|||
Sbjct 1084  CCCACTCTTCCCACTTGCCTCCTCACGTTTCCTCCTTGCAGGTCCCTGTCCGCACCCTCCCAGACCCAAGCCTG  1157

Query  818  AGCTTGCAGTGAGGGCTTCTCCTCGGCCCCTCGCCCGCCCCCAGAGCTGCCATCCCTGCTGTTACAAGCCAGAG  891
            |||||||||||||.|   ||||||||||||.||||||||||||||||||||..|||||||.|||||||||||||
Sbjct 1158  AGCTTGCAGTGAGAG---CTCCTCGGCCCCGCGCCCGCCCCCAGAGCTGCCGCCCCTGCTATTACAAGCCAGAG  1228

Query  892  GCACCCGGATGTGAGGCCCCAGATCACCTCCAGGGACTTGGGGTTCCCATC-----------------------  942
            |||||||||||||||.|||||||||||||||||||||||||||||||.|||                       
Sbjct 1229  GCACCCGGATGTGAGCCCCCAGATCACCTCCAGGGACTTGGGGTTCCGATCTGAAATCCTTTATTTTTGTACCA  1302

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1303  CGGGGTGGGCCCCTGGCCCGAGGAGGAAGACAAGCCCTCTACCTTGTCAGTGCTGCCTGCATCTGCCGGGCTGA  1376

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1377  GACTCACTCCTGCCTTGGGGCCCAGGCCTGGGGCCCTCTGGGACCTTGGAAGGCCTGACATGGGTCCTGGGGTC  1450

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1451  TCCAGGCAGAGACGCCAAGGCCAAACTGTGGCACTACCTACCCATATCTTCCAGGCCCTTTTGTCCCCTCACCT  1524

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1525  GGGCGCCCTTGCTGCATGGCGGATACACTCCCTCCCAGTCCCATCATAGCACCTCTTAGAGCCTCAGTCTCTAT  1598

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1599  GGCACCATAGGGTCATCCTCTCCTCCCACCTACCTCACAGGGTTGTTGTGAGAATCAGGGAGGATCATGGGGTT  1672

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1673  CCTGGGAGCCCTGAGTGTGTTGGGGCTACAATCATTACCTTCTTAGGGGAAGGGCTCTAGCCCCGCCCCTGTAT  1746

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1747  GGGACACTATGGCCTCAGATACTGGTGGGGGACAATGTGAGGACTTTGCCAGGCAGGAAGGAAGTTACAGGCTT  1820

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1821  AACAGCACCTTGGCCACCACTTCTCTGTGCCACCGTGTGTTTGGCAGCAGAGTACAGTGTCCAGGGACTTGGGA  1894

Query  943  --------------------------------------------------------------------------  942
                                                                                      
Sbjct 1895  TGGGGAAGGGGACAGGTGTAACGGGTTGAGCTGTCCCGCCCGTGTCTTGACCACCCCGGGATGGGCACATGTCT  1968

Query  943  -------------------------------------------------------------  942
                                                                         
Sbjct 1969  GTCAGTTGTGTCCCACCCGCCATGAAATAAAGCTGAACAAACAGGCTTGGCCTGGCTGCCA  2029

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.