Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14337
- Subject:
- NR_158609.1
- Aligned Length:
- 3514
- Identities:
- 1541
- Gaps:
- 1937
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGCACCGCGGGGCAGCGGCGCCGCAGCCTGGGCTGGCGGAACCTCGCGCTCCGACTCGCCCCCCGCCTGTAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCGGTCGGCGTTGCGGGCAGGCGCCGCTCCGCTGGGGATTGCTATGCTATGCCTTGTATGACTAAGACCTCTTA 148
Query 1 -----------------------------------------------------ATGAAACAGCCCAACAGGAAA 21
|||||||||||||||||||||
Sbjct 149 CCAAGAATACGTGTCAGACCATAAAACCACTGCCAAGGAGTGCGGGGGTGGCAATGAAACAGCCCAACAGGAAA 222
Query 22 AGGAAGCTTAATATGGATTCCAAAGAGCGTTTGGATCAGGACGGACGCTTGGAGCAAGCTGAAGAGGAAAAGAA 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGGAAGCTTAATATGGATTCCAAAGAGCGTTTGGATCAGGACGGACGCTTGGAGCAAGCTGAAGAGGAAAAGAA 296
Query 96 GCCCAAGGATAGCACAACCCCTTTGAGTCACGTCCCTTCAGCGGCTGCACAGGGAGCATGGTCTTGGGAGTGGT 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCCCAAGGATAGCACAACCCCTTTGAGTCACGTCCCTTCAGCGGCTGCACAGGGAGCATGGTCTTGGGAGTGGT 370
Query 170 ACTTGAAAGAACAGAAGGCTGTCGCAGCACCTGTTGAGCTGTTTTCCAAGGATCAGTCCTTTCCAGAGCATGAA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACTTGAAAGAACAGAAGGCTGTCGCAGCACCTGTTGAGCTGTTTTCCAAGGATCAGTCCTTTCCAGAGCATGAA 444
Query 244 AATGGTTTTCAGATTGGAATGAGATTAGAAGGCATTGATCCCCGACATCCATCGGTATTCTGTGTGCTTTCTGT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AATGGTTTTCAGATTGGAATGAGATTAGAAGGCATTGATCCCCGACATCCATCGGTATTCTGTGTGCTTTCTGT 518
Query 318 AGCGGAGGTTTGTGGTTACCGTCTAAGACTTCATTTTGATGGTTATTTAAGTTGCTATGATTTTTGGACCAATG 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGCGGAGGTTTGTGGTTACCGTCTAAGACTTCATTTTGATGGTTATTTAAGTTGCTATGATTTTTGGACCAATG 592
Query 392 CTGGTTCCCCTGACATTCATCCAGTAGGATGGTGTGAAAAGACCAAACATGAACTGCACATCCCTAAGGGTTAT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGGTTCCCCTGACATTCATCCAGTAGGATGGTGTGAAAAGACCAAACATGAACTGCACATCCCTAAGGGTTAT 666
Query 466 AGAAAAGATAAATTTGTTTGGATGGATTACTTGAAGGCCTGCAAATTGCAAAATGCTCCAAAGAAATTATTCAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGAAAAGATAAATTTGTTTGGATGGATTACTTGAAGGCCTGCAAATTGCAAAATGCTCCAAAGAAATTATTCAG 740
Query 540 AAACAGAAGTCCTAATGGGCCAATGTCTAAAGAATTTCAGGTTGGAATGAAGCTGGAGGCCGTGGACAGGAAGA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAACAGAAGTCCTAATGGGCCAATGTCTAAAGAATTTCAGGTTGGAATGAAGCTGGAGGCCGTGGACAGGAAGA 814
Query 614 ACCCTTCCTTGGTGTGTGTGGCGACCATAGCAGATATTGTTGAAGATCGCTTACTAGTGCATTTTGACAACTGG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ACCCTTCCTTGGTGTGTGTGGCGACCATAGCAGATATTGTTGAAGATCGCTTACTAGTGCATTTTGACAACTGG 888
Query 688 GATGATAGTTACGATTACTGGTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGG 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATGATAGTTACGATTACTGGTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGG 962
Query 762 AAGAACTCTGATAGCACCCCAAGGTTATCCCAATCCAGAAAATTTTTCCTGGACAGAATACCTGGAAGCTACTC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGAACTCTGATAGCACCCCAAGGTTATCCCAATCCAGAAAATTTTTCCTGGACAGAATACCTGGAAGCTACTC 1036
Query 836 AAACCAATGCAGTTCCTGCCAAAGTTTTTAAAATGAGGTTGCCTCATGGTTTTCTGCCAAATATGAAACTTGAA 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAACCAATGCAGTTCCTGCCAAAGTTTTTAAAATGAGGTTGCCTCATGGTTTTCTGCCAAATATGAAACTTGAA 1110
Query 910 GTTGTGGATAAACGGAACCCCAGGTTAATTCGTGTTGCTACGATTGTAGATGTTGATGACCAAAGAGTAAAGGT 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTGTGGATAAACGGAACCCCAGGTTAATTCGTGTTGCTACGATTGTAGATGTTGATGACCAAAGAGTAAAGGT 1184
Query 984 TCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACCCGATCGGAT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACCCGATCGGAT 1258
Query 1058 GGTGTGATGTCACAGGGCATCCACTGGAAGTGCCACAGCGAACGAATGACCTGAAGATCCTTCCAGGTCAAGCT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGTGTGATGTCACAGGGCATCCACTGGAAGTGCCACAGCGAACGAATGACCTGAAGATCCTTCCAGGTCAAGCT 1332
Query 1132 GTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGGACATCACAGTGCTTT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGGACATCACAGTGCTTT 1406
Query 1206 TGGCTGCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGTTTGAGAGAACAAACACAGG 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGGCTGCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGTTTGAGAGAACAAACACAGG 1480
Query 1280 CAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTTTGAACTTCAATGGAAAACATGAA 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTTTGAACTTCAATGGAAAACATGAA 1554
Query 1354 AAGGTGAACAGTCAGCCCAGACT------TGTA-------CAGCAGG-------------------------CA 1389
|||||||||||||||||||||.| ||.| ||||||| ||
Sbjct 1555 AAGGTGAACAGTCAGCCCAGAATACTCGGTGGAGCAGGCGCAGCAGGTGCTTCACCAGTCAGTGTCCATGTCCA 1628
Query 1390 AAGTGT----------TT-----------------------GAAAATCA----AAG------------------ 1408
..|||| || ||..|.|| |||
Sbjct 1629 CGGTGTCAGCCCACCCTTTTCGGGACCTTCCCCTCGGCAGGGAGCAACACTGCAAGTTGCTTCCAGGCGTGGCT 1702
Query 1409 GAAA--------AG--AAG----ATATT-GACT-TGGAT-------------------AATCTCTTC------- 1440
||.| || ||| |..|| |||| ||||| |.|||||||
Sbjct 1703 GACATCCGGGCCAGCCAAGTGGCACGTTGGACTGTGGATGAGGTGGCTGAGTTTGTACAGTCTCTTCTGGGCTG 1776
Query 1441 ---AGAG---GCCGAGTG------------------CGGTGGC-------TCATGCCT---------------- 1467
|||| |||.|||| ||.|||| ||.|||.|
Sbjct 1777 TGAAGAGCATGCCAAGTGCTTTAAGAAAGAGCAGATCGATGGCAAAGCCTTCCTGCTTCTGACACAGACGGACA 1850
Query 1468 --------GTAAT---------------CCCAGCACT-----TT----------------------GGGAGGCC 1491
||.|| ||||||||| || ||.|..||
Sbjct 1851 TTGTCAAAGTGATGAAGATCAAACTGGGCCCAGCACTGAAGATTTACAACTCTATCCTGATGTTCAGGCATTCC 1924
Query 1492 GAGG------------------------CAGGCAGATCACGAGATCAGGAGATCAA----------GACCATC- 1530
.||| ||||| ||.||..|||||.|||.|| ||.|.||
Sbjct 1925 CAGGAACTCCCTGAAGAAGATATTGCCTCAGGC----CAAGAAGTCAGGGGATGAATGGGCTCCCTGAACTTCC 1994
Query 1531 -CTGGCCAACGCAGTGAAACC-CCGTCTCTACCAAAAATACAAAA------------AATTAG----------- 1579
||||| ||..|| ||| .|| ||||..||..||| |||| ||||.|
Sbjct 1995 TCTGGC--ACCAAG----ACCTGCG-CTCTTTCAGCAAT--AAAAGTGGAGCACATTAATTTGATGTGAATGTC 2059
Query 1580 -CCAGGCGTGGTGGCGGGCGCCTA-------------------------------------------------- 1602
||| |||| |.||
Sbjct 2060 CCCA-------TGGC-----CGTATCCACACTGAATCTGGACTTTTTAAAGTGTCTGTGATTTGTTTACATGTT 2121
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2122 TAGAGGATTTTGATGACTGGTCCAGTGCCAATGACTCAGAGGCTTAGGCCCATCTGTGGGTTTGGTTTACGAAC 2195
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2196 ATTGTTATCTTTGGTGGGATCCGCTCAGCTCTGATTTGTTTGCAAGACAGACCAAAGAAGCCCACACATCCACC 2269
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2270 TTTATTCTTCTCCGTCACCAGAAAAGAAACCATTTTCCATCTTACAAGCATAACACTCTCAAGTGGTGAAATAT 2343
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2344 TAGAAAAGCAGTGTTCATGAATACATCGTTAATGTTTTTACCAGAGCAACATCGAGCTTGGCTCAGATCTGCCA 2417
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2418 TGGAGCACAGCTAGTCTAAGAGCTAGAGGCCTGGTGCTTTCAAAAGACTTCATGTGAGATTTTTGTGTACTTTA 2491
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2492 CTCAGGAAAGTGTGAATCTCTAAAAAATAATAATAATAAGCACATGTTTTCATGATTCATTAATTCTCCTTTTT 2565
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2566 GTTCCATTAACCATTTCTTGGTTGTGCTCCCAAGCTTTCCTGGAGCCTCCACAAAGGAGAGTAGCCAGGAGTAA 2639
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2640 TGAGAGGACGGTCAGGTGGGCACTTCCAAAAGCTGGAGAGACCCTTCTGAGGACCCTCCACCATCAGCGGGGCC 2713
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2714 TCAGGGGACCCTGTCCTAACACTGGTGTGGCTGCTGGGCCAGACGCTCACCTGCACAGAACTCCTCCCTGCTCC 2787
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2788 CACTCTGAAGGGCGTTTCAGAATTGACTCATTTCCACTGCAGTCTGCCAGAACCCCTGTAATAAGGAGCTGTGT 2861
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2862 TATATTACATCTGGGGCTGTGTGCATCTTTACAAATGGAGACACACTATTCAAAGGGAAGATCTCTAAAGTAGG 2935
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2936 GAGCGTGGTACTTATTCTTTGTTTGAAACATTCCGATTTGTTGTCAGGCCTTATTTGTTTTTTGTAAGTGATTG 3009
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3010 TATCGGAGGCTTAAGTTGTGTGGAATCAGTCCCACAGTGTTGAAAGACAAGTACCTCTTTTCTGACACTTCTTA 3083
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3084 CTACTTTTACAGGTAGTAACAGCTACAAATACTCTCCCAGAAGTGGAGGGACACCATTTGTGGGTGGGGAGAAA 3157
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3158 GAGGGAGAGGTTCTATGTCCACTTGCTTCATTAAGAATGTTAAGGTTTAAGAAAGTTGATTCTGCTTGGAGAAT 3231
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3232 TTCTCAAGCTTTACATTTTTTTTTCACTGAAGAAAATAAACAAACTCTAAGAGGTGTGCATATATAACATTTCT 3305
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3306 TTAGATCTTTACCTAAAAGGAATTTTAATATATTATTGGTTGATGTAAATTTTGTTTCTGTGGAGTTTTGTTTG 3379
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3380 TTTTGCTTTTTGTAGACTGCCATGTGCAAGTAAAATTCCTGCTTCTGCCATGTTAAAATTTTAATATATTTTAA 3453
Query 1603 ------------------------------------ 1602
Sbjct 3454 ATGATAATAAACAGAGAAAACAAAATTTATACCTCA 3489
