Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14358
- Subject:
- XR_873743.2
- Aligned Length:
- 5426
- Identities:
- 980
- Gaps:
- 4329
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTGTGAACAGGCCTGGAAGAGTCGCGTTTCGGGTCACGCCTGCTCTCGGCAGGCGGTCCAGGCCGGCTGGCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTTGTGACCGACTGCACTGCCTGAGTCTTGCAGGCGACACTGGGCGTTCCCTCCCTTTCCGGCCTTGGACAGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTGTTTTGGATCTTACTTCCCAGTCAAGGAGAGGCTCCCTGTTGACCAAAGGTTTCCCAGTCTCCTTGGGGTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCGGCTGCCAAGTTTCCTTAGTCCCAGTCTGCCAGGACCTGGGACTGCTGGAGATCCTAGAAGGCCAGGACGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGACGCGAGGGGGCGTGGCCCTATTAGCTCCGCCCCCCGGGCCTGCGGGTAGCTCGACTCCCGCCAGCCCCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGGCTCGCGCAGACTAAGCTCTGTACCATTCCTTGCGAACGCTCGGACCCGGACAGGCTGCGCGCACGCGCACT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGGAGCGACAGTCAGGCTCTCGCCCCGTGGTGGCGGCGGCCGCGCCTGCCGCTAGGTGGCGCATGCGCCCTAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGGGCGCGGGCGGTCTCTGGGAAGAAGGCGGCGGCGGCGAGAGGCGGGGGCGCCGTAGGGGCCGGTCCGTGTTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACACAGCGGCGGGCGGGTGCGGACGCGGAACCCGGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAAGATGGTC 666
Query 1 ATGGCGTATTTCATCGAGAATTTTTGGGGGGAAAAAAATAGTGGCTTTGATGTCCTCTACCATAATATGAAACA 74
||||||.|||||.|.||||||||.||||||||||||||||.||||||||||||.||.||||||||||||||.||
Sbjct 667 ATGGCGCATTTCGTGGAGAATTTCTGGGGGGAAAAAAATAATGGCTTTGATGTACTGTACCATAATATGAAGCA 740
Query 75 TGGACAGATATCGACAAAAGAACTAGCAGATTTTGTAAGGGAACGAGCTACCATAGAGGAGGCATACTCCAGGT 148
||||||||||||.||.|||||||||||||||||||||||.|||.|||||||.|||||.||||||||||||||.|
Sbjct 741 TGGACAGATATCAACTAAAGAACTAGCAGATTTTGTAAGAGAAAGAGCTACAATAGAAGAGGCATACTCCAGAT 814
Query 149 CAATGACAAAACTAGCAAAATCTGCAAGCAATTATTCACAACTTGGAACATTTGCACCAGTATGGGATGTATTC 222
||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|.||||||||||||
Sbjct 815 CAATGACAAAACTAGCGAAATCTGCAAGCAATTATTCACAACTTGGAACATTTGCACCAATGTGGGATGTATTC 888
Query 223 AAAACATCTACAGAGAAATTAGCAAATTGTCACTTGGATCTTGTTAGAAAATTACAAGAATTAATAAAGGAAGT 296
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||
Sbjct 889 AAAACATCTACAGAGAAATTAGCAAATTGTCATTTGGATCTTGTTAGAAAATTACAGGAATTAATAAAGGAAGT 962
Query 297 TCAGAAGTATGGAGAAGAACAAGTAAAGTCTCATAAAAAGACTAAAGAAGAAGTTGCAGGAACTCTGGAAGCTG 370
|||||||||||||||.||.|||||.|||||||||||.|||||||||||||||||.|||||.|||||||||||.|
Sbjct 963 TCAGAAGTATGGAGAGGAGCAAGTCAAGTCTCATAAGAAGACTAAAGAAGAAGTCGCAGGGACTCTGGAAGCAG 1036
Query 371 TCCAAACCATTCAGAGCATAACTCAGGCCCTCCAGAAATCCAAGGAAAATTACAATGCCAAGTGTGTAGAACAG 444
|||||.|||||||||..|||||||||||.||||||||.||.|||||||||||||.||||||.||||||||||||
Sbjct 1037 TCCAAGCCATTCAGAATATAACTCAGGCACTCCAGAAGTCGAAGGAAAATTACACTGCCAAATGTGTAGAACAG 1110
Query 445 GAGCGTTTGAAAAAGGAAGGAGCTACACAAAGAGAAATAGAAAAGGCAGCTGTTAAATCTAAGAAAGCTACAGA 518
||.|||.|||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 1111 GAACGTCTGAAAAAGGAAGGAGCTACACAAAGAGAAATAGAAAAGGCAGCTGTTAAGTCTAAGAAAGCTACAGA 1184
Query 519 TACTTATAAACTCTATGTGGAAAAATATGCATTAGCAAAAGCTGATTTCGAACAGAAAATGACAGAAACAGCTC 592
||||||||||||.|||||||||||.|||||||||.|||||||.|||||.||.|||||.||||||||||||||.|
Sbjct 1185 TACTTATAAACTTTATGTGGAAAAGTATGCATTAACAAAAGCAGATTTTGAGCAGAAGATGACAGAAACAGCCC 1258
Query 593 AGAAATTTCAAGATATTGAAGAAACTCATCTCATTCACATAAAGGAAATTATAGGATCCTTGTCAAATGCTATA 666
||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||||.|.
Sbjct 1259 AGAAATTTCAAGATATTGAAGAAACTCACCTCATTCACATAAAGGAAATTATCGGATCCTTGTCAAATGCTGTC 1332
Query 667 AAGGAAATTCATTTGCAGATAGGCCAGGTCCATGAAGAATTTATAAATAACATGGCTAATACTACAGTTGAAAG 740
|||||.||.||.||.|||||.||||||||.||||||||.|||||||||||||||||||||||||||.|||||||
Sbjct 1333 AAGGAGATCCACTTACAGATCGGCCAGGTTCATGAAGAGTTTATAAATAACATGGCTAATACTACAATTGAAAG 1406
Query 741 TTTGATACAAAAATTTGCTGAGTCAAAAGGCACTGGGAAGGAAAGACCTGGCCTCATTGAATTTGAAGAATGTG 814
||||||.||.||||||||.||||||||||||||.|||||||||||||||||.||.||||||||||||||.||||
Sbjct 1407 TTTGATTCAGAAATTTGCCGAGTCAAAAGGCACAGGGAAGGAAAGACCTGGTCTTATTGAATTTGAAGAGTGTG 1480
Query 815 ACACTGCTAGTGCAGTTGAAGGTATAAAACCAAGGAAAAGAAAGACCTTTGCTTTGCCAGGAATCATTAAAAAG 888
||.|||||||||||||||||||.|||||||||||||||||||||||.|||||||||||.|||||.|||||||||
Sbjct 1481 ACCCTGCTAGTGCAGTTGAAGGCATAAAACCAAGGAAAAGAAAGACTTTTGCTTTGCCTGGAATAATTAAAAAG 1554
Query 889 GAAAAAGATGCAGAATCTGTATGGAGTTTCACTGTTGTTGCCCAGGTTGG------AATGCAATGGCGCGATCT 956
|||||.||.|||||||||| ||||.|.|| |||.|| |||.||.| |.|.|| |||.|
Sbjct 1555 GAAAAGGACGCAGAATCTG--TGGAATGTC-CTGATG-----CAGATTCGCTTAATATTCCA-------GATGT 1613
Query 957 TG--------GCTTACTGCATTCTCCACC------------------TCCCAGGTTCAAGCGA-----TTCTCC 999
.| |.||.|.|.|| |..||| |.||| |||.|| ||||.|
Sbjct 1614 AGATGAAGAAGGTTTCAGTAT--TAAACCAGAAGCAAATCAGAATGATACCA-----AAGAGAACCATTTCTAC 1680
Query 1000 TCCTAC-----CTCAGCCTC-------------CCAA----GTAGCTGGA-----ATTA---CGGCGC--CCA- 1040
||.|.| |||.|.||| |||| ||| |.||| ||.| |.|||| |||
Sbjct 1681 TCATCCAGTGACTCTGACTCTGAAGATGAAGAACCAAAGAGGTA-CCGGATAGAGATCAAGCCCGCGCATCCAA 1753
Query 1041 -------CCACCACATC--TGGCTAATTTTTTGTAT----TTTTAGTAGAGACAGGG----------TTTCACC 1091
.||.|||| | |||| ||.||||.|| |...||||...|.|||| |.||.||
Sbjct 1754 ATAACTTGCATCACA-CAATGGC---TTCTTTGGATGAACTGAAAGTATCCATAGGGAATATAACATTGTCCCC 1823
Query 1092 A----TAT--------TGGCCAG-GCTG----GTCGCGAACTCCTGACCT---CAGG----------------- 1128
| ||| .|.|||| ||.| .||| |||.|| |.|| .|||
Sbjct 1824 AGCAGTATCTAGACACAGTCCAGTGCAGATGAATCG-GAATTC---ATCTAGAAAGGGACCAATGATTTACTTG 1893
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1894 CTTGGGATCCCCTGTTCGGATCGTCGCTTGAGTCATCTTCAGCTCCACTAACTTCGTCATCATCGGCCAGACCC 1967
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1968 ACGACACCTCTCTCTTTAGGCACCCTTGTTCCACCTCCAAGGCCTGCTTCCAGACCAAAGCTTGCTTCAGGAAA 2041
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2042 ACTGAGTGGGATCAATGAAATACCCAGGCCATTCAGCCCACCTGTAACTTCCAACACCAGCCCACCTCCTACTG 2115
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2116 CTCCCTTAGCCCGAGCCGAGAGCAGCTCCTCTATCTCCTCGTCTGCCTCGTTGAGTGCTGCCAACACTCCAACA 2189
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2190 GTAGGTGTATCACGGGGTCCCAGCCCGGTCAGCCTTGGAAACCAGGACACTTTACCTGTGGCAATCGCCCTTAC 2263
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2264 AGAATCTGTCAACGCCTACTTTAAAGGAGCAGATCCTACCAAGTGTATTGTGAAGATCACGGGAGACGTGACAA 2337
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2338 TATCATTTCCCAGTGGGATTATTAAAGTCTTCACCAGCAACCCCTCCCCAGCTGTGCTGTGCTTTAGGGTGAAG 2411
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2412 AACATCAGCAGGCTGGAGCAGATCCTTCCAAACTCCCAGCTTGTGTTCAGTGATCCATCACAGTGTGATTCCAA 2485
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2486 CACAAAAGATTTTTGGATGAACATGCAAGCTGTTACTATCTACCTCAAGAAGCTATCAGAACAAAATCCAGCTG 2559
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2560 CTTCTTATTATAATGTAGATGTATTAAAATACCAGGTATCATCAAATGGCATTCAGTCCACTCCTCTAAATCTT 2633
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2634 GCAACCTACTGGAAATGTAGTGCCAGCACCACAGATCTGAGAGTGGATTATAAGTACAACCCAGAAGCTATGGT 2707
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2708 CGCTCCGAGTGTGCTTTCCAACATACAGGTGGTGGTTCCCGTGGATGGAGGTGTCACAAATATGCAGTCCCTTC 2781
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2782 CTCCTGCAATATGGAATGCAGAGCAAATGAAAGCTTTTTGGAAATTATCTGGGATTTCGGAGAAATCAGACAGT 2855
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2856 GGAGGTTCTGGATCCCTCAGAGCAAAATTTGATCTTTCAGAAGGACCCAGCAAACCTACAACACTGGCAGTGCA 2929
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2930 ATTCCTCAGTGAGGGCAATACGCTCTCAGGAGTGGATATTGAGCTTGTGGGTACTGGCTATAGACTTTCCTTAG 3003
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3004 TAAAGAAGCGCTTTGCCACTGGACGATACTTGGCAGATTGTTGATGGACCCCGAATGCGGTTTTCTCAAGGGAA 3077
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3078 TAGTGTGCACCTGCCACTCTGCCTCGCCTGTTCCTTCCAAACACTATTTTTACTTGTATGATGTCTTTCAAATT 3151
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3152 TGCTCTTTGAAAGCTGACTACAAACATTAACTTGCACTTTCAAAGTGTCATTGAAAGAAATAGCACTGAAATGA 3225
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3226 CCTTGTACACAGTAAATGATCAAATGCAATATTCTGGAAGCACATTAATTCAAATTGTCACTAAAATGAAGTCT 3299
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3300 ATTATCTTCAGTGTCTGTGTTCTTAAAAAGGTTAGAATGTAGTAACAAGCCTAACATTTCAGGAGAGCAAGCAC 3373
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3374 AGAAGTTATTTAGCTTTCCATAAGTATTTAGACTCAGAGTTACCTTTGAAGTTTCGTAAGTTTTATGTTGAATA 3447
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3448 AATATAAACAGAACGTGAATTTTTAGGCTTTGAATGTTAACTCAGAGCTCAATCTAATTGAGTTATGTGCCATA 3521
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3522 AGGAAATCAGACCAGAGTCCAAGTTGTATGCAAACAAAAACCATCCCTATAATTTTATTCTCATAAGCATATTA 3595
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3596 ATAAAGTGTAAATGGTGTTTTATATGATCTTTGAGATTCTCAAGTGCAATGTGTTTAAAATAAGCTTACAAAGG 3669
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3670 ACTGCAGAACAACTTACTTCTGCGTTAATTAACTTTATAGAAGTTGTGATTGTTTTGATGAATTAATGCTGTAG 3743
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3744 ATTTAATTTATTTTTATATGGACTACATAATGTGTGCCTTTTAAAACAATAACAAAAACCAGAAATGTGCCTCT 3817
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3818 CTAGTTTGTGTTAATTAATGTGCCTCACTTTCTCCTCACTCTGGATCTTGTATTCAGATTCATACAGTGCTCAA 3891
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3892 GCATATTTAAAAGATATTTGCAATTTTTAAAATACTTTTGGCTTGTAATTGAGAAGAAAATTCAAAATAACTAA 3965
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3966 AAGATAATTTATACTTAAAAATCCTGTCTCATTTCTTTAGTGATGTACCGTAGCCACTAGAAAAACAAATCAGC 4039
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4040 CTAATGGAATATGTTTACTGGGAATAAAATTACCTTTAGATATTCAACATTGACCTCATTATAAATGCGTGAAG 4113
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4114 CAGACAAGCTCTGAAACTGTGGTGATAAATTGGTAACTGGTATTTTAACTGTAATTTAGCATTTCCCTTGACCC 4187
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4188 TACTTATCAAAGAGAATTTACACATTATTGTGTTGTAAACACAAGTTTCCTAGCATTTTATAAATAATTTTTTG 4261
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4262 AAAAGATTCATTTTAGCAGTGAGAGAAGTACTGTCACTTGTTTTATTTTAACAATTAGAAAGTTGTCAGATTCC 4335
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4336 CATATGGTAAAAATAGGTCAAGTATGTGAAGTGGTGAAGGATTGGATTAAGAGATTCTGAAAATGAACTGTTCA 4409
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4410 TACAGAGTAGTAGCTTTCTAGCAAATTCCGATTAACAAAAGAAATATATGTTTTAGACAAAGTTTCATAATTTA 4483
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4484 CAAATGGGAATTTATGATAAATACCAACGTCTTTTTCATTTTTCATGGAAATGATAGCTTGTGTTATATCTGGT 4557
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4558 AAACCATTATATAAAACACTAATTTTGTTAATTTTGTTAAGCTTTACAGAAAATAATATCCCTATTACTAGACA 4631
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4632 TTAATATAACGTCTTGCTATACTAAACACAGCAGAAATCTATTCCTTTTCACAGTATGTAATACAAAATGAGCA 4705
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4706 TTTTATAGTCAGTGTTACTCCAATTCTAAATTTAGGTTTGACTTAGGTAGACATAAGACAATTTGATCTTTACT 4779
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4780 AACTAGCAAAATTAGAATTTCTAACTCTTATGTTCTTTAAAATGCCAGTTACAATTACACTTACTAAAATCTGA 4853
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4854 CTAAATCTGCTTTTATTGGGCAGTTGATGCTTTAGTATTTGAAGTTTGACACTGCTGCAATGTCTGTTTTTAAT 4927
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4928 CAGGTGTTACCTTGAGATGTTAAACTGCTTGGAATGGTTAACCTTGTGCACTTTCTTAATCCCCATAGCCTTTA 5001
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 5002 TACTGAGTGTCAACATGCAAGTTTATATTGGGTACAGGTTACAATTTTAAAGCCATATGAGTTTATAGTGATTC 5075
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 5076 TTTTTTCCATTTAAAAATTCACTAATGTTAAAAAAAATTTAAAAAAAGAGGCCCAGTAGATTCAGTGGGAGACT 5149
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 5150 ATCTTATCTAGCAAGCTGGTTCTTGCTTGTGTACAGTGATAACTTTGTAGCTGCTTCTTTAACTAAGAATTTGT 5223
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 5224 AAACACAGAACTCTTAACACATGTGAGCTTTTAAGGATCGTTATTTACTACTTTGGGTTGTAATTAGAGCACAT 5297
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 5298 CTATCTTCCAAAATTTTGTAAATATTTTTGATTTTTTTCATAACATGTAAATATTACATAAAAGTTGTATTCCT 5371
Query 1129 ------------------------ 1128
Sbjct 5372 AATAAACATGTAATATATAATTTA 5395
