Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14392
Subject:
NM_001178003.2
Aligned Length:
3468
Identities:
2802
Gaps:
651

Alignment

Query    1  ATGTCAGATGCAGCAGAAGCTCCCCGAGAAGCAACAGGAGAAAATGGAGAAACAGAAATGAAAGAAGAGGAGGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTCAGATGCAGCAGAAGCTCCCCGAGAAGCAACAGGAGAAAATGGAGAAACAGAAATGAAAGAAGAGGAGGA  74

Query   75  ACCTAATCCAAATTATAAAGAAGTAGAAGATCCACAACAGGAATCAAAAGATGACACAATAGCATGGAGAGAGT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  ACCTAATCCAAATTATAAAGAAGTAGAAGATCCACAACAGGAATCAAAAGATGACACAATAGCATGGAGAGAGT  148

Query  149  CTCAGGAGGAGGAGAGGAAAACGGGCGAGGAGGAAGGGGAGGAGGAGGAGAAAGAGGAGGAGGGGAAGGAGGAC  222
            ||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||
Sbjct  149  CTCAGGAGGAGGAGAGGAAAACGGGCGAGGAGGAAGGG---------------GAGGAGGAGGGGAAGGAGGAC  207

Query  223  AAAAAGATTGTCATGGAAGAAACTGAGGAAAAGGCTGGAGAAGTCCAAGAGAAGGAGGCTTCAGGAATACAGGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  208  AAAAAGATTGTCATGGAAGAAACTGAGGAAAAGGCTGGAGAAGTCCAAGAGAAGGAGGCTTCAGGAATACAGGA  281

Query  297  AGAAACCACAGTAGAGCCCCAAGAAGTCACAGCGTCCATGATCCGTTTGGAGACACAGATTACTGATTCCCAGT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  AGAAACCACAGTAGAGCCCCAAGAAGTCACAGCGTCCATGATCCGTTTGGAGACACAGATTACTGATTCCCAGT  355

Query  371  CAATCACATCAGGAATTTTCCCAAAAACCCAAAGAGGTAGCAAGTCAAAGCTTTCCTTACAATTGGAGGATGCA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  CAATCACATCAGGAATTTTCCCAAAAACCCAAAGAGGTAGCAAGTCAAAGCTTTCCTTACAATTGGAGGATGCA  429

Query  445  GAAACAGATGAGCTTTTAAGAGACCTGAGCACACAAATTGAATTTCTTGATTTGGATCAAATCAGTCCTGAGGA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  430  GAAACAGATGAGCTTTTAAGAGACCTGAGCACACAAATTGAATTTCTTGATTTGGATCAAATCAGTCCTGAGGA  503

Query  519  ACAACAGATTAGTTCCCCTGAAAGGCAGCCCTCAGGAGAGCTTGAGGAGAAAACCGACCGGATGCCCCAAGATG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  504  ACAACAGATTAGTTCCCCTGAAAGGCAGCCCTCAGGAGAGCTTGAGGAGAAAACCGACCGGATGCCCCAAGATG  577

Query  593  AACTGGGACAAGAAAGAAGGGACTTGGAGCCAGAAAACAGAGAGGAGGGACAAGAAAGGAGAGTATCCGACATC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  578  AACTGGGACAAGAAAGAAGGGACTTGGAGCCAGAAAACAGAGAGGAGGGACAAGAAAGGAGAGTATCCGACATC  651

Query  667  CAGTCCAAAGCAGGGATCTCCCGGGAGTCACTGGTGTCCAGCACCACAGAGGACATTCTGTTTCAAAAGGATAA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  652  CAGTCCAAAGCAGGGATCTCCCGGGAGTCACTGGTGTCCAGCACCACAGAGGACATTCTGTTTCAAAAGGATAA  725

Query  741  AAGCACCCCGGTGTATCCCTTGACCATGACCTGGTCGTTTGGATGGAACAGTTCTCTTCCTGTTTACTATATTC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  726  AAGCACCCCGGTGTATCCCTTGACCATGACCTGGTCGTTTGGATGGAACAGTTCTCTTCCTGTTTACTATATTC  799

Query  815  GAGAGGAAAGGCAGAGAGTTCTTCTGTATGTTTGTGCTCACACTGCGATCATCTACAATGTGTTCAGGAACAAT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  800  GAGAGGAAAGGCAGAGAGTTCTTCTGTATGTTTGTGCTCACACTGCGATCATCTACAACGTGTTCAGGAACAAT  873

Query  889  CAATACCACCTTCAGGGCCACGCCAATATTATCTCCTGCCTCTGCGTCAGTGAAGACAGGCGGTGGATCGCCAC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  874  CAATACCACCTTCAGGGCCACGCCAATATTATCTCCTGCCTCTGCGTCAGTGAAGACAGGCGGTGGATCGCCAC  947

Query  963  AGCAGACAAAGGGCCAGACTGCCTGGTGATTATATGGGACTCCTTCACAGGTATTCCTGTGCACACAATATTTG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  948  AGCAGACAAAGGGCCAGACTGCCTGGTGATTATATGGGACTCCTTCACAGGTATTCCTGTGCACACAATATTTG  1021

Query 1037  ACAGCTGCCCTGAAGGGAATGGCATCATGGCCATGGCCATGACCCACGACGCCAAGTATCTGGCAACCATCTCA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022  ACAGCTGCCCTGAAGGGAATGGCATCATGGCCATGGCCATGACCCACGACGCCAAGTATCTGGCAACCATCTCA  1095

Query 1111  GATGCTGAAGTCCAGAAGGTATGCATCTGGAAGTGGACTTTGGCAGTGGAAACGCCAGCATGCACTCTCGAACT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096  GATGCTGAAGTCCAGAAGGTATGCATCTGGAAGTGGACTTTGGCAGTGGAAACGCCAGCATGCACTCTCGAACT  1169

Query 1185  CCCCACAGAGTACGGTGTTCAGAACTACGTTACTTTTAACCCAACAAATAATAAAGAATTGGTGAGCAATAGTA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170  CCCCACAGAGTACGGTGTTCAGAACTACGTTACTTTTAACCCAACAAATAATAAAGAATTGGTGAGCAATAGTA  1243

Query 1259  AAACACGGGCAATATATTATGCATGGTATGAAGAGAGGGATACACTGGCTCACAGTGCCCCACTTTTAACTGAA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244  AAACACGGGCAATATATTATGCATGGTATGAAGAGAGGGATACACTGGCTCACAGTGCCCCACTTTTAACTGAA  1317

Query 1333  AAAACCTTCAACAAGCTTGTGGGAAAGTTTAGCCAGTCCATCTTTCACTTGAATTTAACACAAATACTCTCAGC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318  AAAACCTTCAACAAGCTTGTGGGAAAGTTTAGCCAGTCCATCTTTCACTTGAATTTAACACAAATACTCTCAGC  1391

Query 1407  CACAATGGAAGGGAAGCTGGTTGTCTGGGACATACACCGCCCACCCTCATCTGCCTCCACCTTTTTGGGCTTTC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392  CACAATGGAAGGGAAGCTGGTTGTCTGGGACATACACCGCCCACCCTCATCTGCCTCCACCTTTTTGGGCTTTC  1465

Query 1481  CCTATATCAAGCCTTGTAAATTGGTTCATTTGCAGAAAGAGGGTATCACGGTACTTACCACAATTGATAGCTAC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466  CCTATATCAAGCCTTGTAAATTGGTTCATTTGCAGAAAGAGGGTATCACGGTACTTACCACAATTGATAGCTAC  1539

Query 1555  ATTGTCACAGGTGACATTAAGGGGAACATTAAGTTCTATGATCACACCCTGTCTATTGTTAACTGGTACAGTCA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540  ATTGTCACAGGTGACATTAAGGGGAACATTAAGTTCTATGATCACACCCTGTCTATTGTTAACTGGTACAGTCA  1613

Query 1629  CTTGAAACTGGGCGCCATAAGAACTCTGTCCTTTTCAAAGACCCCAGCAACTCCTCCTACTGAAAAATCAAACT  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614  CTTGAAACTGGGCGCCATAAGAACTCTGTCCTTTTCAAAGACCCCAGCAACTCCTCCTACTGAAAAATCAAACT  1687

Query 1703  ATCCTCCTGACTGCACTTTAAAAGGTGACCTTTTTGTCTTAAGGAATTTTATCATTGGAACATCTGATGCCGCG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688  ATCCTCCTGACTGCACTTTAAAAGGTGACCTTTTTGTCTTAAGGAATTTTATCATTGGAACATCTGATGCCGCG  1761

Query 1777  GTGTACCACTTAACAACAGATGGGACCAAACTTGAGAAGTTATTTGTAGAGCCCAAGGATGCCATTTGTGCCAT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762  GTGTACCACTTAACAACAGATGGGACCAAACTTGAGAAGTTATTTGTAGAGCCCAAGGATGCCATTTGTGCCAT  1835

Query 1851  CTCCTGCCACCCATATCAACCCCTCATTGCCATCGGGAGCATCTGTGGGATGATCAAAGTGTGGAATTATGAAA  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836  CTCCTGCCACCCATATCAACCCCTCATTGCCATCGGGAGCATCTGTGGGATGATCAAAGTGTGGAATTATGAAA  1909

Query 1925  ACAAACAATATCTTTTCAGCAGGGTTTTTGAGAAGGGGTTTGGAGTCCAGAGTCTGACCTACAACCCCGAAGGA  1998
            ||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1910  ACAAACAATATCTTTTCAGCAGGGTTTTTGAGAAGGGGCTTGGAGTCCAGAGTCTGACCTACAACCCCGAAGGA  1983

Query 1999  GCCCTTCTTGGAGCTGGCTTTACAGAGGGGACAGTTTACATTCTTGATGCAATGTCTTTAGAAAATGAAAGCCC  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1984  GCCCTTCTTGGAGCTGGCTTTACAGAGGGGACAGTTTACATTCTTGATGCAATGTCTTTAGAAAATGAAAGCCC  2057

Query 2073  AGAGCCTTTCAAATATTCCAGAACCAGTGTGACTCATATAAGCTTTTCCCATGACTCCCAGTATATGGCAACTG  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2058  AGAGCCTTTCAAATATTCCAGAACCAGTGTGACTCATATAAGCTTTTCCCATGACTCCCAGTATATGGCAACTG  2131

Query 2147  CTGATAGAAGTTTTACTGTGGCTGTTTACATGCTGGTGGTCAGAAATGGACAGAGGGTCTGGGAGTACTTAGCA  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2132  CTGATAGAAGTTTTACTGTGGCTGTTTACATGCTGGTGGTCAGAAATGGACAGAGGGTCTGGGAGTACTTAGCA  2205

Query 2221  AGACTTCGCTCTCATCGCAAAAGCATTCGAAGTCTCCTGTTTGGGGTTTACCTGGACAGCAATGAGCCTAGACT  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206  AGACTTCGCTCTCATCGCAAAAGCATTCGAAGTCTCCTGTTTGGGGTTTACCTGGACAGCAATGAGCCTAGACT  2279

Query 2295  GCTGAGCCTTGGGACAGACAGGCTCTTGATAGAGTATGATCTTCTCAGGAGCTACAAAGACCACCTGGAAGTCC  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280  GCTGAGCCTTGGGACAGACAGGCTCTTGATAGAGTATGATCTTCTCAGGAGCTACAAAGACCACCTGGAAGTCC  2353

Query 2369  TGGACATTCACCACACCGACCAGGGCTGCTATCCCACCTGCATGGTCTGGTACCCACCACTCACCAGGGAACTC  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2354  TGGACATTCACCACACCGACCAGGGCTGCTATCCCACCTGCATGGTCTGGTACCCACCACTCACCAGGGAACTC  2427

Query 2443  TTCCTGCTTATTTGCAACAGTGGCTACAAAGTGAAGCTTTTTAATGCTACTACCAAAATGTGCAGAAAGACGCT  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2428  TTCCTGCTTATTTGCAACAGTGGCTACAAAGTGAAGCTTTTTAATGCTACTACCAAAATGTGCAGAAAGACGCT  2501

Query 2517  TCTGGGGCCAGCTTATGGTTCCCCTATTGAGCAGACACAAGTCCTCCCAGTGAGAAGCATGGCGGAGCTACAGA  2590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502  TCTGGGGCCAGCTTATGGTTCCCCTATTGAGCAGACACAAGTCCTCCCAGTGAGAAGCATGGCGGAGCTACAGA  2575

Query 2591  AACGCTACTTGGTGTTTATTAACAGAGACAAGTTGGGACTTCAGATCTTACCAGTTGACGGCAATCCACATAAG  2664
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 2576  AACGCTACTTGGTGTTTATTAACAGAGACAAGGTGGGACTTCAGATCTTACCAGTTGACGGCAATCCACATAAG  2649

Query 2665  ACATCTGCTATTGTTTGCCACCCGAACGGGGTGGCCGGCATGGCCGTTTCCTATGATGGCTGCTACGCCTTCAC  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2650  ACATCTGCTATTGTTTGCCACCCGAACGGGGTGGCCGGCATGGCCGTTTCCTATGATGGCTGCTACGCCTTCAC  2723

Query 2739  TGCGGGAGGGCACGATCGCTCGGTGGTGCAGTGGAAAATCACCTTAAG-TGTCCTGG-----AGGCAGCGGTTT  2806
            |||||||||||||||||||||||||||||||||||||||||||||||| ..||||||     |||||.|     
Sbjct 2724  TGCGGGAGGGCACGATCGCTCGGTGGTGCAGTGGAAAATCACCTTAAGCCATCCTGGGAGCCAGGCACC-----  2792

Query 2807  CTCTTGGGGGTGAAGACTTGACCCCATTCTATGGTCTGCTGTCTGGTGGCCGGGAAGGAAAATTCTACAGGGAG  2880
                        ||.| ||..||||||                           .||..|.||    ||.|.||
Sbjct 2793  ------------AATA-TTATCCCCAT---------------------------CAGACACAT----CAAGAAG  2822

Query 2881  CTAGAAGACTACTTCTACTATTCTCAGCTCCGCAGTCAAGGCATCGACACAATGGAGACCAGAAAGGTGTCAGA  2954
            |                                                                         
Sbjct 2823  C-------------------------------------------------------------------------  2823

Query 2955  ACACATTTGCCTGTCAGAGCTTCCTTTTGTCATGAGAGCAATTGGCTTTTACCCATCTGAAGAGAAGATTGATG  3028
                                                                                      
Sbjct 2824  --------------------------------------------------------------------------  2823

Query 3029  ATATATTTAACGAAATCAAATTTGGTGAATATGTGGACACTGGAAAGCTAATCGACAAGATCAACTTACCAGAT  3102
                                                                                      
Sbjct 2824  --------------------------------------------------------------------------  2823

Query 3103  TTCCTAAAAGTGTACCTTAACCACAAGCCACCTTTTGGTAACACCATGAGTGGCATCCACAAGAGCTTTGAGGT  3176
                                                                                      
Sbjct 2824  --------------------------------------------------------------------------  2823

Query 3177  GCTCGGTTATACCAACTCCAAAGGGAAAAAGGCCATTCGAAGAGAGGACTTCCTGAGACTGCTCGTTACTAAAG  3250
                                                                                      
Sbjct 2824  --------------------------------------------------------------------------  2823

Query 3251  GTGAGCATATGACGGAGGAGGAGATGTTGGATTGCTTTGCTTCACTGTTTGGCCTGAATCCCGAGGGATGGAAA  3324
                                                                                      
Sbjct 2824  --------------------------------------------------------------------------  2823

Query 3325  TCCGAGCCTGCAACCTGCTCCGTCAAAGGTTCAGAAATTTGCCTTGAAGAAGAACTTCCAGACGAAATCACTGC  3398
                                                                                      
Sbjct 2824  --------------------------------------------------------------------------  2823

Query 3399  AGAAATATTCGCGACTGAAATTCTTGGCTTAACCATTTCAGAAGATTCCGCCCAGGATTGTCAG  3462
                                                                            
Sbjct 2824  ----------------------------------------------------------------  2823

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