Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14427
Subject:
NM_177045.3
Aligned Length:
2567
Identities:
1361
Gaps:
994

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCCAGGGCCAAGACCTCGGAAGGGCCCTAAGACCAGTGGCCAGGGTGCTGAGACTGCCAAGCAGCTGGGGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTTTGTGGAGTTCAACCCTGAGGACATGCTCCTGGGGGTGGATGAGACTGAAGATGATGGAGACCTGGAGGCTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGTTACTGGCACTCACAGGGGAAACAGCGAGCAGGAGCAGGAAGCCAGCACCCAAGGGGCAGGCTCCACTGCCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATGGCCCACATTGAGAAGCTGGCAGCAGACTGTATGCGAGATGTGGAGGAGGATGAAGAAGAGGAAGGGCTGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGACGATGCAGACCTTCTGACAGAGCTGCAGGAGGTCCTGGGTGAGGATGAAGAAGCGGGTCTGCTGGACGGCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTGAGGCAGCAAGTCCAGACCTCTGTGAGGAGAAGACTTGGGACAACACTGAACTACCTGTAGAGCAGGCAGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGCCAACAGGCAGTACCTGCTGCAGCTCAGGCTGGAGGGCCTCGGGGGCTGCAGGCTTTGCTGGAGGAACGGAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCGTAACTACCGGGAGGCCGCAGCCAGTGCCAAGGAGGCTGGTGAAGCTGCCAAAGCCCGGCGCTGTGAGCGAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCTAAAGACTCTGCAGTCCCAGCTTGCCACTGTGAGGAAAGGCGGGAAGATCTGTGAGGATGAGATCCCACCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCAGTAGCCTTGGGCAAAAGGCCCCCAGCCCCCCAGGAAAGAGCCATCAAGAACCCTGAGATAGACTCTCCAGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCCCTGTGCCATGGAGCCAGGCAACCTTTCCCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CAGACCCAGACCCACAAGCCCTGCTGTTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGG  888

Query    1  ------------------------------ATGAGGATTGGGAAGAGATTCGGTGCTGTCCTGGAGGCCCTGGA  44
                                          ||||||||.|||||||||||.|||.|||||||.|||||||||||
Sbjct  889  GCTGGAGATCTAGACCGTGCTCGGGAGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGA  962

Query   45  GAAGGGGCAGCCCGTGGATCTGAGTGCCATGCCCCCGGCACCTGAGGATCTGAAG-----CCCCAGCAGGCTTC  113
            .|||||.|||||.|||||.|||||||.|||||||||.|||||||.||||||||||     ||||  ||||||||
Sbjct  963  AAAGGGTCAGCCTGTGGACCTGAGTGGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCC--CAGGCTTC  1034

Query  114  TCAGGCTCCCACAGCACCCTCAGTCATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGACGTCC  187
            |.||||..||.|||||.||..||.|.|..|||||||.||.||||.|.|||||||||||||||||.|||||.|||
Sbjct 1035  TAAGGCCTCCTCAGCAACCCAAGGCCTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCC  1108

Query  188  CAGCAACCCCAGTGGCCCCTACAGAGTC-ACAGACAGTGCTGGATGCCCTGCAGCAGAGGCTGAACAAGTACCG  260
            ||||.|||||||||||||||.|.|||.| ||| ||||||||||||||..|.|||||.||||||||||||||.||
Sbjct 1109  CAGCCACCCCAGTGGCCCCTGCGGAGCCAACA-ACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCG  1181

Query  261  CGAGGCGGGCATCCAGGCCCGGAGTGG----TGGGGACGAGCGCAAGGCTCGGATGCATGAGCGCATTGCCAAG  330
            .|||||.||||||||||||||    ||    ||||||.|||||||||||..|||||||.||.||||||||||||
Sbjct 1182  TGAGGCAGGCATCCAGGCCCG----GGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAG  1251

Query  331  CAATATCAAGATGCTATTCGAGCACACCGAGCAGGACGGAAAGTCAACTTTGCTGAATTGCCTGTTCCTCCAGG  404
            ||||||||.||||||.|||||||.||.|..|||||||.||||||..|||||||.||.||.||||||||||||||
Sbjct 1252  CAATATCAGGATGCTGTTCGAGCTCATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGG  1325

Query  405  ATTTCCCCCCATCCCTGGCCTGGAGTCCACTATGGGTGTTGAGGAGGACGCAGTGGCAGCGACATTGGCAGCTG  478
            ||||||.||||||||||||||||||.|||..|..|||..||||.||||..||||||||||.||.||.|||.|||
Sbjct 1326  ATTTCCTCCCATCCCTGGCCTGGAGCCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTG  1399

Query  479  CAGAGAAACTGGCCTCTGCAGAGGATTCAGCCCCGGCTGATAAAGACGAGGACGAGGGTGAGCCCCCAGCACAG  552
            |..|.||||||||||   ||||.|||.||||||.||..|||   |||||.||.|||.||||..|.|||||||||
Sbjct 1400  CCCAAAAACTGGCCT---CAGAAGATGCAGCCCTGGTAGAT---GACGACGAGGAGAGTGACACTCCAGCACAG  1467

Query  553  GCCCCAGTGGCCAAGAAACCTGCACGGCCCACAGTCCCTTCATCCCAGCGCCTGCCTGAGCCCAGGGCCTCAAG  626
            ||||||.||||||||||.||.||.|.|.|....|||.||.|||||||.|..|||.|||||||||.|||.|||||
Sbjct 1468  GCCCCATTGGCCAAGAAGCCAGCGCAGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAAG  1541

Query  627  TTCTAAGGAGTCACCGAGTCCATCTGTGCGGGAGCAGCTGGCACTGCTGGAGGCACGGAAACTGCAGTATCAGC  700
            ||||||||||||||.||||||||||||.|||||||||.||.|||||||||||||.|||||||||||.||.||||
Sbjct 1542  TTCTAAGGAGTCACTGAGTCCATCTGTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATACCAGC  1615

Query  701  GGGCAGCCCTGCAGGCCAAGCGCAGCCAGGACCTGGAGCAGGCCAAAGCCTATCTGCGGGTAGCCAAATGGCTT  774
            |.|||||.|||||.|||||||||||.|||||.||.||||||||||||.||.|..|.||.|||||.|||.|.|||
Sbjct 1616  GAGCAGCTCTGCAAGCCAAGCGCAGGCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCTAAAAGTCTT  1689

Query  775  GAGGCTCAGATCATCCAGGCCCGATCTGG-CAGACCTGTTGATCTGTCCAAGGTGCCTTCGCCCTTGACGGATG  847
            ||||||||||||||||||||||||.|||| || |||..|||||||.||||||||||||||.||.|||||.||||
Sbjct 1690  GAGGCTCAGATCATCCAGGCCCGAGCTGGTCA-ACCCATTGATCTCTCCAAGGTGCCTTCACCGTTGACAGATG  1762

Query  848  AGGAGGGTGACTTCATCCTCATCCACCATGAGGACCTGCGACTCTCCCAGAAGGCGGAGGAGGTGTATGCCCAG  921
            |.|||||.||||||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct 1763  AAGAGGGGGACTTCATCCTCATTCACCATGAGGATCTGCGACTCTCCCAGAAGGCTGAGGAGGTGTATGCCCAG  1836

Query  922  CTGCAAAAAATGCTTCTGGAGCAACAAGAGAAGTGCCTGCTGTTCTCCAAGCAGTTCATGCACCAGGGCAACGT  995
            ||.||.||||||||.|.||||||.||||.||||||||||||.|||||||||||||.||||||||||||.||.||
Sbjct 1837  CTACAGAAAATGCTCCAGGAGCAGCAAGCGAAGTGCCTGCTATTCTCCAAGCAGTACATGCACCAGGGAAATGT  1910

Query  996  GGCTGAGACCACCCGATTTGAGAAGCTTGCTCAGGACCGCAAGAAACAGCTGGAGATCCTGCAGCTGGCCCAGG  1069
            ||||||||||||.||.|||||||.||||||..|||||||.|||||||||||.||||||||||||||.|||||.|
Sbjct 1911  GGCTGAGACCACTCGGTTTGAGAGGCTTGCGGAGGACCGAAAGAAACAGCTTGAGATCCTGCAGCTAGCCCAAG  1984

Query 1070  CTCAGGGCCTCGACCCTCCCACCCACCACTTTGAGTTGAAGACATTCCAGACTGTGAGGATCTTCTCAGAACTC  1143
            |.||||||||.||||||||.|..||.|||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1985  CCCAGGGCCTTGACCCTCCTAGTCATCACTTTGAGCTGAAGACATTCCAGACTGTGAGGATCTTCTCAGAACTC  2058

Query 1144  AACAGCACAGAAATGCATCTGATCATTGTCCGGGGAATGAACCTCCCAGCCCCTCCAGGGGTGACTCCCGATGA  1217
            ||||||||||||||||||||||||||.||.|||||||||||||||||||||||.|||||.||||||||.|||||
Sbjct 2059  AACAGCACAGAAATGCATCTGATCATCGTGCGGGGAATGAACCTCCCAGCCCCGCCAGGAGTGACTCCGGATGA  2132

Query 1218  CCTGGATGCTTTTGTGCGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAAAAAGCAAAACAGCTGTGG  1291
            |.|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133  CTTGGATGCTTTTGTACGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAAAAAGCAAAACAGCTGTGG  2206

Query 1292  TGAAGAACACAAACTCTCCAGAATTTGATCAACTCTTCAAACTAAACATCAACCGAAACCACCGGGGCTTCAAG  1365
            |.||.||.||.||.||||||||||||||.|||.|.|||||.|||||||||||.|||||||||||.|||||.|.|
Sbjct 2207  TAAAAAATACCAATTCTCCAGAATTTGAACAAGTTTTCAAGCTAAACATCAATCGAAACCACCGAGGCTTTAGG  2280

Query 1366  AGGGTGATCCAGAGCAAAGGCATCAAGTTTGAGATCTTCCACAAAGGGTCCTTCTTCAGAAGCGACAAGCTGGT  1439
            ||.|||||||||||||||||.|||||.||||||||||||||||||||.|||||.||.|||||.|||||||||||
Sbjct 2281  AGAGTGATCCAGAGCAAAGGAATCAAATTTGAGATCTTCCACAAAGGATCCTTTTTTAGAAGTGACAAGCTGGT  2354

Query 1440  TGGCACAGCACACCTGAAACTGGAGCGGCTGGAGAATGAGTGTGAGATCAGAGAAATTGTGGAGGTCCTGGATG  1513
            |||||||||||||.|||||.||||..||||||||||.|||||||||||||||||.||..|||||||..||||||
Sbjct 2355  TGGCACAGCACACTTGAAATTGGAAAGGCTGGAGAAGGAGTGTGAGATCAGAGAGATCATGGAGGTTTTGGATG  2428

Query 1514  GAAGGAAGCCCACCGGGGGGAAGCTGGAGGTGAAGCCGATG--------GCC----AGCA-CCAGGAGATGAGT  1574
            |.||.||||||||.|||||||||||||||||||||..||.|        |||    |||| ||||||..||   
Sbjct 2429  GCAGAAAGCCCACTGGGGGGAAGCTGGAGGTGAAGGTGAGGCTTCGGGAGCCTCTGAGCAGCCAGGACGTG---  2499

Query 1575  CAGGCCGCGACTGTGCAGGAGA-----------------------------  1596
            |||.|.|..|||      ||||                             
Sbjct 2500  CAGACGGTCACT------GAGAACTGGCTGGTCCTGGAGCCTCGGGGCCTG  2544

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