Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14427
Subject:
XM_006503152.3
Aligned Length:
2468
Identities:
1361
Gaps:
895

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTCCTGGGGGTGGATGAGACTGAAGATGATGGAGACCTGGAGGCTGAGTTACTGGCACTCACAGGGGAAAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCGAGCAGGAGCAGGAAGCCAGCACCCAAGGGGCAGGCTCCACTGCCCATGGCCCACATTGAGAAGCTGGCAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGACTGTATGCGAGATGTGGAGGAGGATGAAGAAGAGGAAGGGCTGGAGGACGATGCAGACCTTCTGACAGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGCAGGAGGTCCTGGGTGAGGATGAAGAAGCGGGTCTGCTGGACGGCAGTGAGGCAGCAAGTCCAGACCTCTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGAGGAGAAGACTTGGGACAACACTGAACTACCTGTAGAGCAGGCAGCCTGCCAACAGGCAGTACCTGCTGCAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCAGGCTGGAGGGCCTCGGGGGCTGCAGGCTTTGCTGGAGGAACGGATCCGTAACTACCGGGAGGCCGCAGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGTGCCAAGGAGGCTGGTGAAGCTGCCAAAGCCCGGCGCTGTGAGCGAGGCCTAAAGACTCTGCAGTCCCAGCT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGCCACTGTGAGGAAAGGCGGGAAGATCTGTGAGGATGAGATCCCACCTCCAGTAGCCTTGGGCAAAAGGCCCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAGCCCCCCAGGAAAGAGCCATCAAGAACCCTGAGATAGACTCTCCAGGTCCCTGTGCCATGGAGCCAGGCAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTTCCCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATTCAGACCCAGACCCACAAGCCCTGCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGGGCTGGAGATCTAGACCGTGCTCGGG  814

Query    1  -----ATGAGGATTGGGAAGAGATTCGGTGCTGTCCTGGAGGCCCTGGAGAAGGGGCAGCCCGTGGATCTGAGT  69
                 ||||||||.|||||||||||.|||.|||||||.|||||||||||.|||||.|||||.|||||.||||||
Sbjct  815  AGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGAAAAGGGTCAGCCTGTGGACCTGAGT  888

Query   70  GCCATGCCCCCGGCACCTGAGGATCTGAAG-----CCCCAGCAGGCTTCTCAGGCTCCCACAGCACCCTCAGTC  138
            |.|||||||||.|||||||.||||||||||     ||||  |||||||||.||||..||.|||||.||..||.|
Sbjct  889  GGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCC--CAGGCTTCTAAGGCCTCCTCAGCAACCCAAGGC  960

Query  139  ATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGACGTCCCAGCAACCCCAGTGGCCCCTACAGA  212
            .|..|||||||.||.||||.|.|||||||||||||||||.|||||.|||||||.|||||||||||||||.|.||
Sbjct  961  CTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCCCAGCCACCCCAGTGGCCCCTGCGGA  1034

Query  213  GTC-ACAGACAGTGCTGGATGCCCTGCAGCAGAGGCTGAACAAGTACCGCGAGGCGGGCATCCAGGCCCGGAGT  285
            |.| ||| ||||||||||||||..|.|||||.||||||||||||||.||.|||||.||||||||||||||    
Sbjct 1035  GCCAACA-ACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCGTGAGGCAGGCATCCAGGCCCG----  1103

Query  286  GG----TGGGGACGAGCGCAAGGCTCGGATGCATGAGCGCATTGCCAAGCAATATCAAGATGCTATTCGAGCAC  355
            ||    ||||||.|||||||||||..|||||||.||.||||||||||||||||||||.||||||.|||||||.|
Sbjct 1104  GGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAGCAATATCAGGATGCTGTTCGAGCTC  1177

Query  356  ACCGAGCAGGACGGAAAGTCAACTTTGCTGAATTGCCTGTTCCTCCAGGATTTCCCCCCATCCCTGGCCTGGAG  429
            |.|..|||||||.||||||..|||||||.||.||.||||||||||||||||||||.||||||||||||||||||
Sbjct 1178  ATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGGATTTCCTCCCATCCCTGGCCTGGAG  1251

Query  430  TCCACTATGGGTGTTGAGGAGGACGCAGTGGCAGCGACATTGGCAGCTGCAGAGAAACTGGCCTCTGCAGAGGA  503
            .|||..|..|||..||||.||||..||||||||||.||.||.|||.||||..|.||||||||||   ||||.||
Sbjct 1252  CCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTGCCCAAAAACTGGCCT---CAGAAGA  1322

Query  504  TTCAGCCCCGGCTGATAAAGACGAGGACGAGGGTGAGCCCCCAGCACAGGCCCCAGTGGCCAAGAAACCTGCAC  577
            |.||||||.||..|||   |||||.||.|||.||||..|.|||||||||||||||.||||||||||.||.||.|
Sbjct 1323  TGCAGCCCTGGTAGAT---GACGACGAGGAGAGTGACACTCCAGCACAGGCCCCATTGGCCAAGAAGCCAGCGC  1393

Query  578  GGCCCACAGTCCCTTCATCCCAGCGCCTGCCTGAGCCCAGGGCCTCAAGTTCTAAGGAGTCACCGAGTCCATCT  651
            .|.|....|||.||.|||||||.|..|||.|||||||||.|||.|||||||||||||||||||.||||||||||
Sbjct 1394  AGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAAGTTCTAAGGAGTCACTGAGTCCATCT  1467

Query  652  GTGCGGGAGCAGCTGGCACTGCTGGAGGCACGGAAACTGCAGTATCAGCGGGCAGCCCTGCAGGCCAAGCGCAG  725
            ||.|||||||||.||.|||||||||||||.|||||||||||.||.|||||.|||||.|||||.|||||||||||
Sbjct 1468  GTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATACCAGCGAGCAGCTCTGCAAGCCAAGCGCAG  1541

Query  726  CCAGGACCTGGAGCAGGCCAAAGCCTATCTGCGGGTAGCCAAATGGCTTGAGGCTCAGATCATCCAGGCCCGAT  799
            .|||||.||.||||||||||||.||.|..|.||.|||||.|||.|.|||||||||||||||||||||||||||.
Sbjct 1542  GCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCTAAAAGTCTTGAGGCTCAGATCATCCAGGCCCGAG  1615

Query  800  CTGG-CAGACCTGTTGATCTGTCCAAGGTGCCTTCGCCCTTGACGGATGAGGAGGGTGACTTCATCCTCATCCA  872
            |||| || |||..|||||||.||||||||||||||.||.|||||.|||||.|||||.||||||||||||||.||
Sbjct 1616  CTGGTCA-ACCCATTGATCTCTCCAAGGTGCCTTCACCGTTGACAGATGAAGAGGGGGACTTCATCCTCATTCA  1688

Query  873  CCATGAGGACCTGCGACTCTCCCAGAAGGCGGAGGAGGTGTATGCCCAGCTGCAAAAAATGCTTCTGGAGCAAC  946
            |||||||||.||||||||||||||||||||.||||||||||||||||||||.||.||||||||.|.||||||.|
Sbjct 1689  CCATGAGGATCTGCGACTCTCCCAGAAGGCTGAGGAGGTGTATGCCCAGCTACAGAAAATGCTCCAGGAGCAGC  1762

Query  947  AAGAGAAGTGCCTGCTGTTCTCCAAGCAGTTCATGCACCAGGGCAACGTGGCTGAGACCACCCGATTTGAGAAG  1020
            |||.||||||||||||.|||||||||||||.||||||||||||.||.||||||||||||||.||.|||||||.|
Sbjct 1763  AAGCGAAGTGCCTGCTATTCTCCAAGCAGTACATGCACCAGGGAAATGTGGCTGAGACCACTCGGTTTGAGAGG  1836

Query 1021  CTTGCTCAGGACCGCAAGAAACAGCTGGAGATCCTGCAGCTGGCCCAGGCTCAGGGCCTCGACCCTCCCACCCA  1094
            |||||..|||||||.|||||||||||.||||||||||||||.|||||.||.||||||||.||||||||.|..||
Sbjct 1837  CTTGCGGAGGACCGAAAGAAACAGCTTGAGATCCTGCAGCTAGCCCAAGCCCAGGGCCTTGACCCTCCTAGTCA  1910

Query 1095  CCACTTTGAGTTGAAGACATTCCAGACTGTGAGGATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCA  1168
            .|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911  TCACTTTGAGCTGAAGACATTCCAGACTGTGAGGATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCA  1984

Query 1169  TTGTCCGGGGAATGAACCTCCCAGCCCCTCCAGGGGTGACTCCCGATGACCTGGATGCTTTTGTGCGGTTTGAG  1242
            |.||.|||||||||||||||||||||||.|||||.||||||||.||||||.|||||||||||||.|||||||||
Sbjct 1985  TCGTGCGGGGAATGAACCTCCCAGCCCCGCCAGGAGTGACTCCGGATGACTTGGATGCTTTTGTACGGTTTGAG  2058

Query 1243  TTTCACTACCCTAACTCGGACCAGGCTCAAAAAAGCAAAACAGCTGTGGTGAAGAACACAAACTCTCCAGAATT  1316
            ||||||||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||.|||||||||||
Sbjct 2059  TTTCACTACCCTAACTCGGACCAGGCTCAAAAAAGCAAAACAGCTGTGGTAAAAAATACCAATTCTCCAGAATT  2132

Query 1317  TGATCAACTCTTCAAACTAAACATCAACCGAAACCACCGGGGCTTCAAGAGGGTGATCCAGAGCAAAGGCATCA  1390
            |||.|||.|.|||||.|||||||||||.|||||||||||.|||||.|.|||.|||||||||||||||||.||||
Sbjct 2133  TGAACAAGTTTTCAAGCTAAACATCAATCGAAACCACCGAGGCTTTAGGAGAGTGATCCAGAGCAAAGGAATCA  2206

Query 1391  AGTTTGAGATCTTCCACAAAGGGTCCTTCTTCAGAAGCGACAAGCTGGTTGGCACAGCACACCTGAAACTGGAG  1464
            |.||||||||||||||||||||.|||||.||.|||||.||||||||||||||||||||||||.|||||.||||.
Sbjct 2207  AATTTGAGATCTTCCACAAAGGATCCTTTTTTAGAAGTGACAAGCTGGTTGGCACAGCACACTTGAAATTGGAA  2280

Query 1465  CGGCTGGAGAATGAGTGTGAGATCAGAGAAATTGTGGAGGTCCTGGATGGAAGGAAGCCCACCGGGGGGAAGCT  1538
            .||||||||||.|||||||||||||||||.||..|||||||..|||||||.||.||||||||.|||||||||||
Sbjct 2281  AGGCTGGAGAAGGAGTGTGAGATCAGAGAGATCATGGAGGTTTTGGATGGCAGAAAGCCCACTGGGGGGAAGCT  2354

Query 1539  GGAGGTGAAGCCGATG--------GCC----AGCA-CCAGGAGATGAGTCAGGCCGCGACTGTGCAGGAGA---  1596
            ||||||||||..||.|        |||    |||| ||||||..||   |||.|.|..|||      ||||   
Sbjct 2355  GGAGGTGAAGGTGAGGCTTCGGGAGCCTCTGAGCAGCCAGGACGTG---CAGACGGTCACT------GAGAACT  2419

Query 1597  --------------------------  1596
                                      
Sbjct 2420  GGCTGGTCCTGGAGCCTCGGGGCCTG  2445

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.