Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14427
- Subject:
- XR_376326.1
- Aligned Length:
- 3412
- Identities:
- 1361
- Gaps:
- 1839
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGCGCCTGCCACCGCCTCCTGGGCGGGAGCTTCCTGTGGCTGTCTCCGCCGCGGCCGCCCGGGGGCCGCGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCTAGGCGGTTCCGGGCTCGAGAAGGCCCGGTTTTGGTTCGGATCCGCCGCGAGGTATCTAGCCTGCCAAGAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCAGGGCCAAGACCTCGGAAGGGCCCTAAGACCAGTGGCCAGGGTGCTGAGACTGCCAAGCAGCTGGGGCTTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTGTGGAGTTCAACCCTGAGGACATGCTCCTGGGGGTGGATGAGACTGAAGATGATGGAGACCTGGAGGCTGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTACTGGCACTCACAGGGGAAACAGCGAGCAGGAGCAGGAAGCCAGCACCCAAGGGGCAGGCTCCACTGCCCAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGCCCACATTGAGAAGCTGGCAGCAGACTGTATGCGAGATGTGGAGGAGGATGAAGAAGAGGAAGGGCTGGAGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACGATGCAGACCTTCTGACAGAGCTGCAGGAGGTCCTGGGTGAGGATGAAGAAGCGGGTCTGCTGGACGGCAGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGCAGCAAGTCCAGACCTCTGTGAGGAGAAGACTTGGGACAACACTGAACTACCTGTAGAGCAGGCAGCCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAACAGGCAGTACCTGCTGCAGCTCAGGCTGGAGGGCCTCGGGGGCTGCAGGCTTTGCTGGAGGAACGGATCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTAACTACCGGGAGGCCGCAGCCAGTGCCAAGGAGGCTGGTGAAGCTGCCAAAGCCCGGCGCTGTGAGCGAGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTAAAGACTCTGCAGTCCCAGCTTGCCACTGTGAGGAAAGGCGGGAAGATCTGTGAGGATGAGATCCCACCTCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTAGCCTTGGGCAAAAGGCCCCCAGCCCCCCAGGAAAGAGCCATCAAGAACCCTGAGATAGACTCTCCAGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTGTGCCATGGAGCCAGGCAACCTTTCCCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATTCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GACCCAGACCCACAAGCCCTGCTGTTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGGGC 1036
Query 1 ----------------------------ATGAGGATTGGGAAGAGATTCGGTGCTGTCCTGGAGGCCCTGGAGA 46
||||||||.|||||||||||.|||.|||||||.|||||||||||.|
Sbjct 1037 TGGAGATCTAGACCGTGCTCGGGAGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGAAA 1110
Query 47 AGGGGCAGCCCGTGGATCTGAGTGCCATGCCCCCGGCACCTGAGGATCTGAAG-----CCCCAGCAGGCTTCTC 115
||||.|||||.|||||.|||||||.|||||||||.|||||||.|||||||||| |||| |||||||||.
Sbjct 1111 AGGGTCAGCCTGTGGACCTGAGTGGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCC--CAGGCTTCTA 1182
Query 116 AGGCTCCCACAGCACCCTCAGTCATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGACGTCCCA 189
||||..||.|||||.||..||.|.|..|||||||.||.||||.|.|||||||||||||||||.|||||.|||||
Sbjct 1183 AGGCCTCCTCAGCAACCCAAGGCCTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCCCA 1256
Query 190 GCAACCCCAGTGGCCCCTACAGAGTC-ACAGACAGTGCTGGATGCCCTGCAGCAGAGGCTGAACAAGTACCGCG 262
||.|||||||||||||||.|.|||.| ||| ||||||||||||||..|.|||||.||||||||||||||.||.|
Sbjct 1257 GCCACCCCAGTGGCCCCTGCGGAGCCAACA-ACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCGTG 1329
Query 263 AGGCGGGCATCCAGGCCCGGAGTGG----TGGGGACGAGCGCAAGGCTCGGATGCATGAGCGCATTGCCAAGCA 332
||||.|||||||||||||| || ||||||.|||||||||||..|||||||.||.||||||||||||||
Sbjct 1330 AGGCAGGCATCCAGGCCCG----GGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAGCA 1399
Query 333 ATATCAAGATGCTATTCGAGCACACCGAGCAGGACGGAAAGTCAACTTTGCTGAATTGCCTGTTCCTCCAGGAT 406
||||||.||||||.|||||||.||.|..|||||||.||||||..|||||||.||.||.||||||||||||||||
Sbjct 1400 ATATCAGGATGCTGTTCGAGCTCATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGGAT 1473
Query 407 TTCCCCCCATCCCTGGCCTGGAGTCCACTATGGGTGTTGAGGAGGACGCAGTGGCAGCGACATTGGCAGCTGCA 480
||||.||||||||||||||||||.|||..|..|||..||||.||||..||||||||||.||.||.|||.||||.
Sbjct 1474 TTCCTCCCATCCCTGGCCTGGAGCCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTGCC 1547
Query 481 GAGAAACTGGCCTCTGCAGAGGATTCAGCCCCGGCTGATAAAGACGAGGACGAGGGTGAGCCCCCAGCACAGGC 554
.|.|||||||||| ||||.|||.||||||.||..||| |||||.||.|||.||||..|.|||||||||||
Sbjct 1548 CAAAAACTGGCCT---CAGAAGATGCAGCCCTGGTAGAT---GACGACGAGGAGAGTGACACTCCAGCACAGGC 1615
Query 555 CCCAGTGGCCAAGAAACCTGCACGGCCCACAGTCCCTTCATCCCAGCGCCTGCCTGAGCCCAGGGCCTCAAGTT 628
||||.||||||||||.||.||.|.|.|....|||.||.|||||||.|..|||.|||||||||.|||.|||||||
Sbjct 1616 CCCATTGGCCAAGAAGCCAGCGCAGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAAGTT 1689
Query 629 CTAAGGAGTCACCGAGTCCATCTGTGCGGGAGCAGCTGGCACTGCTGGAGGCACGGAAACTGCAGTATCAGCGG 702
||||||||||||.||||||||||||.|||||||||.||.|||||||||||||.|||||||||||.||.|||||.
Sbjct 1690 CTAAGGAGTCACTGAGTCCATCTGTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATACCAGCGA 1763
Query 703 GCAGCCCTGCAGGCCAAGCGCAGCCAGGACCTGGAGCAGGCCAAAGCCTATCTGCGGGTAGCCAAATGGCTTGA 776
|||||.|||||.|||||||||||.|||||.||.||||||||||||.||.|..|.||.|||||.|||.|.|||||
Sbjct 1764 GCAGCTCTGCAAGCCAAGCGCAGGCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCTAAAAGTCTTGA 1837
Query 777 GGCTCAGATCATCCAGGCCCGATCTGG-CAGACCTGTTGATCTGTCCA-------------------------- 823
||||||||||||||||||||||.|||| || |||..|||||||.||||
Sbjct 1838 GGCTCAGATCATCCAGGCCCGAGCTGGTCA-ACCCATTGATCTCTCCAAGGTAACATGGCAGGGCCAGTCTAGT 1910
Query 824 -----------------------------------------------------------------AGGTGCCTT 832
|||||||||
Sbjct 1911 AGAAACAGTGCCAGGGATAGAATGGGAGGCAGTGAGTGTCATTGGAGGGGCCTTATGATCTGGGCAGGTGCCTT 1984
Query 833 CGCCCTTGACGGATGAGGAGGGTGACTTCATCCTCATCCACCATGAGGACCTGCGACTCTCCCAGAAGGCGGAG 906
|.||.|||||.|||||.|||||.||||||||||||||.|||||||||||.||||||||||||||||||||.|||
Sbjct 1985 CACCGTTGACAGATGAAGAGGGGGACTTCATCCTCATTCACCATGAGGATCTGCGACTCTCCCAGAAGGCTGAG 2058
Query 907 GAGGTGTATGCCCAGCTGCAAAAAATGCTTCTGGAGCAACAAGAGAAGTGCCTGCTGTTCTCCAAGCAGTTCAT 980
|||||||||||||||||.||.||||||||.|.||||||.||||.||||||||||||.|||||||||||||.|||
Sbjct 2059 GAGGTGTATGCCCAGCTACAGAAAATGCTCCAGGAGCAGCAAGCGAAGTGCCTGCTATTCTCCAAGCAGTACAT 2132
Query 981 GCACCAGGGCAACGTGGCTGAGACCACCCGATTTGAGAAGCTTGCTCAGGACCGCAAGAAACAGCTGGAGATCC 1054
|||||||||.||.||||||||||||||.||.|||||||.||||||..|||||||.|||||||||||.|||||||
Sbjct 2133 GCACCAGGGAAATGTGGCTGAGACCACTCGGTTTGAGAGGCTTGCGGAGGACCGAAAGAAACAGCTTGAGATCC 2206
Query 1055 TGCAGCTGGCCCAGGCTCAGGGCCTCGACCCTCCCACCCACCACTTTGAGTTGAAGACATTCCAGACTGTGAGG 1128
|||||||.|||||.||.||||||||.||||||||.|..||.|||||||||.|||||||||||||||||||||||
Sbjct 2207 TGCAGCTAGCCCAAGCCCAGGGCCTTGACCCTCCTAGTCATCACTTTGAGCTGAAGACATTCCAGACTGTGAGG 2280
Query 1129 ATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCATTGTCCGGGGAATGAACCTCCCAGCCCCTCCAGG 1202
|||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.|||||
Sbjct 2281 ATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCATCGTGCGGGGAATGAACCTCCCAGCCCCGCCAGG 2354
Query 1203 GGTGACTCCCGATGACCTGGATGCTTTTGTGCGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAAAAA 1276
.||||||||.||||||.|||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2355 AGTGACTCCGGATGACTTGGATGCTTTTGTACGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAAAAA 2428
Query 1277 GCAAAACAGCTGTGGTGAAGAACACAAACTCTCCAGAATTTGATCAACTCTTCAAACTAAACATCAACCGAAAC 1350
||||||||||||||||.||.||.||.||.||||||||||||||.|||.|.|||||.|||||||||||.||||||
Sbjct 2429 GCAAAACAGCTGTGGTAAAAAATACCAATTCTCCAGAATTTGAACAAGTTTTCAAGCTAAACATCAATCGAAAC 2502
Query 1351 CACCGGGGCTTCAAGAGGGTGATCCAGAGCAAAGGCATCAAGTTTGAGATCTTCCACAAAGGGTCCTTCTTCAG 1424
|||||.|||||.|.|||.|||||||||||||||||.|||||.||||||||||||||||||||.|||||.||.||
Sbjct 2503 CACCGAGGCTTTAGGAGAGTGATCCAGAGCAAAGGAATCAAATTTGAGATCTTCCACAAAGGATCCTTTTTTAG 2576
Query 1425 AAGCGACAAGCTGGTTGGCACAGCACACCTGAAACTGGAGCGGCTGGAGAATGAGTGTGAGATCAGAGAAATTG 1498
|||.||||||||||||||||||||||||.|||||.||||..||||||||||.|||||||||||||||||.||..
Sbjct 2577 AAGTGACAAGCTGGTTGGCACAGCACACTTGAAATTGGAAAGGCTGGAGAAGGAGTGTGAGATCAGAGAGATCA 2650
Query 1499 TGGAGGTCCTGGATGGAAGGAAGCCCACCGGGGGGAAGCTGGAGGTGAAGCCGATG--------GCC----AGC 1560
|||||||..|||||||.||.||||||||.|||||||||||||||||||||..||.| ||| |||
Sbjct 2651 TGGAGGTTTTGGATGGCAGAAAGCCCACTGGGGGGAAGCTGGAGGTGAAGGTGAGGCTTCGGGAGCCTCTGAGC 2724
Query 1561 A-CCAGGAGATGAGTCAGGCCGCGACTGTGCAGGAGA------------------------------------- 1596
| ||||||..|| |||.|.|..||| ||||
Sbjct 2725 AGCCAGGACGTG---CAGACGGTCACT------GAGAACTGGCTGGTCCTGGAGCCTCGGGGCCTGTGAAGAGG 2789
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2790 TGGACATCCTTGGTAACAGCTCACTGACCCAGCTGTGCCGGCTCAAGAGCCGTTGTACATCAGAGATGCTGCTA 2863
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2864 CACACGCACCAAAGACCTGATAACTAACAGTGGCCTGGGCTTTCCTCCTGCTGCCTCTCCTGGACCTTCGTGGA 2937
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2938 AGCAGGCCTCCCACCCTCCCTGTGGGCGAAGACAAGGATACCCCACTGCTCTGTGCCACAGAGTCCCGTAACCG 3011
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3012 CTGCATAGTAATTGCGTACCGCTTAACCCAGCCCCCATTTGCACCATTTCTGGATGTGCCTTTCAAAGATGTAA 3085
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3086 CTGTAGGGATGGGAGAACTCGAGGGTGATCGGAACATCCCGTGTGGGGAGGGACAGGATTCCGTGACTCCAGCT 3159
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3160 GGCCAGCGGCAGACTGTCCCGCTCAGCTGTTTTCCCTCTGCCTGTGCCTTTGTTCCTGACAGCTGCTGCACTAG 3233
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3234 CCTTTCTGCTTCCCAGAGGACTCGGGAACAGGAACGTTACTTTGGTACTATTGGTGGGAAGTAAGGGAAGGTTC 3307
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3308 TCTTTGGTTTGGTCCATGTACCTAAGGTGAAAGACTGTTAATTGGGGAGAAAAAAAGGAAAAAAGAAAAAGAAA 3381
Query 1597 -------- 1596
Sbjct 3382 AACTATCA 3389
