Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14427
- Subject:
- XR_376327.1
- Aligned Length:
- 3341
- Identities:
- 1361
- Gaps:
- 1768
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGCGCCTGCCACCGCCTCCTGGGCGGGAGCTTCCTGTGGCTGTCTCCGCCGCGGCCGCCCGGGGGCCGCGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCTAGGCGGTTCCGGGCTCGAGAAGGCCCGGTTTTGGTTCGGATCCGCCGCGAGGTATCTAGCCTGCCAAGAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCAGGGCCAAGACCTCGGAAGGGCCCTAAGACCAGTGGCCAGGGTGCTGAGACTGCCAAGCAGCTGGGGCTTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTGTGGAGTTCAACCCTGAGGACATGCTCCTGGGGGTGGATGAGACTGAAGATGATGGAGACCTGGAGGCTGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTACTGGCACTCACAGGGGAAACAGCGAGCAGGAGCAGGAAGCCAGCACCCAAGGGGCAGGCTCCACTGCCCAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGCCCACATTGAGAAGCTGGCAGCAGACTGTATGCGAGATGTGGAGGAGGATGAAGAAGAGGAAGGGCTGGAGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACGATGCAGACCTTCTGACAGAGCTGCAGGAGGTCCTGGGTGAGGATGAAGAAGCGGGTCTGCTGGACGGCAGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGCAGCAAGTCCAGACCTCTGTGAGGAGAAGACTTGGGACAACACTGAACTACCTGTAGAGCAGGCAGCCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAACAGGCAGTACCTGCTGCAGCTCAGGCTGGAGGGCCTCGGGGGCTGCAGGCTTTGCTGGAGGAACGGATCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTAACTACCGGGAGGCCGCAGCCAGTGCCAAGGAGGCTGGTGAAGCTGCCAAAGCCCGGCGCTGTGAGCGAGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTAAAGACTCTGCAGTCCCAGCTTGCCACTGTGAGGAAAGGCGGGAAGATCTGTGAGGATGAGATCCCACCTCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTAGCCTTGGGCAAAAGGCCCCCAGCCCCCCAGGAAAGAGCCATCAAGAACCCTGAGATAGACTCTCCAGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTGTGCCATGGAGCCAGGCAACCTTTCCCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATTCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GACCCAGACCCACAAGCCCTGCTGTTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGGGC 1036
Query 1 ----------------------------ATGAGGATTGGGAAGAGATTCGGTGCTGTCCTGGAGGCCCTGGAGA 46
||||||||.|||||||||||.|||.|||||||.|||||||||||.|
Sbjct 1037 TGGAGATCTAGACCGTGCTCGGGAGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGAAA 1110
Query 47 AGGGGCAGCCCGTGGATCTGAGTGCCATGCCCCCGGCACCTGAGGATCTGAAG-----CCCCAGCAGGCTTCTC 115
||||.|||||.|||||.|||||||.|||||||||.|||||||.|||||||||| |||| |||||||||.
Sbjct 1111 AGGGTCAGCCTGTGGACCTGAGTGGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCC--CAGGCTTCTA 1182
Query 116 AGGCTCCCACAGCACCCTCAGTCATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGACGTCCCA 189
||||..||.|||||.||..||.|.|..|||||||.||.||||.|.|||||||||||||||||.|||||.|||||
Sbjct 1183 AGGCCTCCTCAGCAACCCAAGGCCTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCCCA 1256
Query 190 GCAACCCCAGTGGCCCCTACAGAGTC-ACAGACAGTGCTGGATGCCCTGCAGCAGAGGCTGAACAAGTACCGCG 262
||.|||||||||||||||.|.|||.| ||| ||||||||||||||..|.|||||.||||||||||||||.||.|
Sbjct 1257 GCCACCCCAGTGGCCCCTGCGGAGCCAACA-ACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCGTG 1329
Query 263 AGGCGGGCATCCAGGCCCGGAGTGG----TGGGGACGAGCGCAAGGCTCGGATGCATGAGCGCATTGCCAAGCA 332
||||.|||||||||||||| || ||||||.|||||||||||..|||||||.||.||||||||||||||
Sbjct 1330 AGGCAGGCATCCAGGCCCG----GGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAGCA 1399
Query 333 ATATCAAGATGCTATTCGAGCACACCGAGCAGGACGGAAAGTCAACTTTGCTGAATTGCCTGTTCCTCCAGGAT 406
||||||.||||||.|||||||.||.|..|||||||.||||||..|||||||.||.||.||||||||||||||||
Sbjct 1400 ATATCAGGATGCTGTTCGAGCTCATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGGAT 1473
Query 407 TTCCCCCCATCCCTGGCCTGGAGTCCACTATGGGTGTTGAGGAGGACGCAGTGGCAGCGACATTGGCAGCTGCA 480
||||.||||||||||||||||||.|||..|..|||..||||.||||..||||||||||.||.||.|||.||||.
Sbjct 1474 TTCCTCCCATCCCTGGCCTGGAGCCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTGCC 1547
Query 481 GAGAAACTGGCCTCTGCAGAGGATTCAGCCCCGGCTGATAAAGACGAGGACGAGGGTGAGCCCCCAGCACAGGC 554
.|.|||||||||| ||||.|||.||||||.||..||| |||||.||.|||.||||..|.|||||||||||
Sbjct 1548 CAAAAACTGGCCT---CAGAAGATGCAGCCCTGGTAGAT---GACGACGAGGAGAGTGACACTCCAGCACAGGC 1615
Query 555 CCCAGTGGCCAAGAAACCTGCACGGCCCACAGTCCCTTCATCCCAGCGCCTGCCTGAGCCCAGGGCCTCAAGTT 628
||||.||||||||||.||.||.|.|.|....|||.||.|||||||.|..|||.|||||||||.|||.|||||||
Sbjct 1616 CCCATTGGCCAAGAAGCCAGCGCAGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAAGTT 1689
Query 629 CTAAGGAGTCACCGAGTCCATCTGTGCGGGAGCAGCTGGCACTGCTGGAGGCACGGAAACTGCAGTATCAGCGG 702
||||||||||||.||||||||||||.|||||||||.||.|||||||||||||.|||||||||||.||.|||||.
Sbjct 1690 CTAAGGAGTCACTGAGTCCATCTGTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATACCAGCGA 1763
Query 703 GCAGCCCTGCAGGCCAAGCGCAGCCAGGACCTGGAGCAGGCCAAAGCCTATCTGCGGGTAGCCAAATGGCTTGA 776
|||||.|||||.|||||||||||.|||||.||.||||||||||||.||.|..|.||.|||||.|||.|.|||||
Sbjct 1764 GCAGCTCTGCAAGCCAAGCGCAGGCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCTAAAAGTCTTGA 1837
Query 777 GGCTCAGATCATCCAGGCCCGATCTGG-CAGACCTGTTGATCTGTCCA--------------------AGGTGC 829
||||||||||||||||||||||.|||| || |||..|||||||.|||| ||||||
Sbjct 1838 GGCTCAGATCATCCAGGCCCGAGCTGGTCA-ACCCATTGATCTCTCCAAGGGGCCTTATGATCTGGGCAGGTGC 1910
Query 830 CTTCGCCCTTGACGGATGAGGAGGGTGACTTCATCCTCATCCACCATGAGGACCTGCGACTCTCCCAGAAGGCG 903
||||.||.|||||.|||||.|||||.||||||||||||||.|||||||||||.||||||||||||||||||||.
Sbjct 1911 CTTCACCGTTGACAGATGAAGAGGGGGACTTCATCCTCATTCACCATGAGGATCTGCGACTCTCCCAGAAGGCT 1984
Query 904 GAGGAGGTGTATGCCCAGCTGCAAAAAATGCTTCTGGAGCAACAAGAGAAGTGCCTGCTGTTCTCCAAGCAGTT 977
||||||||||||||||||||.||.||||||||.|.||||||.||||.||||||||||||.|||||||||||||.
Sbjct 1985 GAGGAGGTGTATGCCCAGCTACAGAAAATGCTCCAGGAGCAGCAAGCGAAGTGCCTGCTATTCTCCAAGCAGTA 2058
Query 978 CATGCACCAGGGCAACGTGGCTGAGACCACCCGATTTGAGAAGCTTGCTCAGGACCGCAAGAAACAGCTGGAGA 1051
||||||||||||.||.||||||||||||||.||.|||||||.||||||..|||||||.|||||||||||.||||
Sbjct 2059 CATGCACCAGGGAAATGTGGCTGAGACCACTCGGTTTGAGAGGCTTGCGGAGGACCGAAAGAAACAGCTTGAGA 2132
Query 1052 TCCTGCAGCTGGCCCAGGCTCAGGGCCTCGACCCTCCCACCCACCACTTTGAGTTGAAGACATTCCAGACTGTG 1125
||||||||||.|||||.||.||||||||.||||||||.|..||.|||||||||.||||||||||||||||||||
Sbjct 2133 TCCTGCAGCTAGCCCAAGCCCAGGGCCTTGACCCTCCTAGTCATCACTTTGAGCTGAAGACATTCCAGACTGTG 2206
Query 1126 AGGATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCATTGTCCGGGGAATGAACCTCCCAGCCCCTCC 1199
||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.||
Sbjct 2207 AGGATCTTCTCAGAACTCAACAGCACAGAAATGCATCTGATCATCGTGCGGGGAATGAACCTCCCAGCCCCGCC 2280
Query 1200 AGGGGTGACTCCCGATGACCTGGATGCTTTTGTGCGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAA 1273
|||.||||||||.||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 AGGAGTGACTCCGGATGACTTGGATGCTTTTGTACGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAA 2354
Query 1274 AAAGCAAAACAGCTGTGGTGAAGAACACAAACTCTCCAGAATTTGATCAACTCTTCAAACTAAACATCAACCGA 1347
|||||||||||||||||||.||.||.||.||.||||||||||||||.|||.|.|||||.|||||||||||.|||
Sbjct 2355 AAAGCAAAACAGCTGTGGTAAAAAATACCAATTCTCCAGAATTTGAACAAGTTTTCAAGCTAAACATCAATCGA 2428
Query 1348 AACCACCGGGGCTTCAAGAGGGTGATCCAGAGCAAAGGCATCAAGTTTGAGATCTTCCACAAAGGGTCCTTCTT 1421
||||||||.|||||.|.|||.|||||||||||||||||.|||||.||||||||||||||||||||.|||||.||
Sbjct 2429 AACCACCGAGGCTTTAGGAGAGTGATCCAGAGCAAAGGAATCAAATTTGAGATCTTCCACAAAGGATCCTTTTT 2502
Query 1422 CAGAAGCGACAAGCTGGTTGGCACAGCACACCTGAAACTGGAGCGGCTGGAGAATGAGTGTGAGATCAGAGAAA 1495
.|||||.||||||||||||||||||||||||.|||||.||||..||||||||||.|||||||||||||||||.|
Sbjct 2503 TAGAAGTGACAAGCTGGTTGGCACAGCACACTTGAAATTGGAAAGGCTGGAGAAGGAGTGTGAGATCAGAGAGA 2576
Query 1496 TTGTGGAGGTCCTGGATGGAAGGAAGCCCACCGGGGGGAAGCTGGAGGTGAAGCCGATG--------GCC---- 1557
|..|||||||..|||||||.||.||||||||.|||||||||||||||||||||..||.| |||
Sbjct 2577 TCATGGAGGTTTTGGATGGCAGAAAGCCCACTGGGGGGAAGCTGGAGGTGAAGGTGAGGCTTCGGGAGCCTCTG 2650
Query 1558 AGCA-CCAGGAGATGAGTCAGGCCGCGACTGTGCAGGAGA---------------------------------- 1596
|||| ||||||..|| |||.|.|..||| ||||
Sbjct 2651 AGCAGCCAGGACGTG---CAGACGGTCACT------GAGAACTGGCTGGTCCTGGAGCCTCGGGGCCTGTGAAG 2715
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2716 AGGTGGACATCCTTGGTAACAGCTCACTGACCCAGCTGTGCCGGCTCAAGAGCCGTTGTACATCAGAGATGCTG 2789
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2790 CTACACACGCACCAAAGACCTGATAACTAACAGTGGCCTGGGCTTTCCTCCTGCTGCCTCTCCTGGACCTTCGT 2863
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2864 GGAAGCAGGCCTCCCACCCTCCCTGTGGGCGAAGACAAGGATACCCCACTGCTCTGTGCCACAGAGTCCCGTAA 2937
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2938 CCGCTGCATAGTAATTGCGTACCGCTTAACCCAGCCCCCATTTGCACCATTTCTGGATGTGCCTTTCAAAGATG 3011
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3012 TAACTGTAGGGATGGGAGAACTCGAGGGTGATCGGAACATCCCGTGTGGGGAGGGACAGGATTCCGTGACTCCA 3085
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3086 GCTGGCCAGCGGCAGACTGTCCCGCTCAGCTGTTTTCCCTCTGCCTGTGCCTTTGTTCCTGACAGCTGCTGCAC 3159
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3160 TAGCCTTTCTGCTTCCCAGAGGACTCGGGAACAGGAACGTTACTTTGGTACTATTGGTGGGAAGTAAGGGAAGG 3233
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3234 TTCTCTTTGGTTTGGTCCATGTACCTAAGGTGAAAGACTGTTAATTGGGGAGAAAAAAAGGAAAAAAGAAAAAG 3307
Query 1597 ----------- 1596
Sbjct 3308 AAAAACTATCA 3318
