Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14462
- Subject:
- XM_006540350.2
- Aligned Length:
- 3036
- Identities:
- 1532
- Gaps:
- 1282
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAATTTACCTCAGCAGGTAAATGGGTCAGCTGGTCCTGTACGGAAGGGCCAGCCCCAAGCTGGGCGGACTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGTTTGACAACTTCAAAAAGCAGGTGCCAACCTGGCCTATTCAGCAATGAGGAAGCTGAGGCTCAGAGAGATG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGTCACTGACCCACAGTCACACAGCTGGGTGACAGAGGAACTCGCAGACCGGGTCTATTTGAGATTCATTCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTCCACCCAACCCGAAGAGGTGCCCAGAAATCTGGTGTGAGGGTTGCTGTGGACTCTCCACCCCCTCCTGGGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCATCCTGTCAGGGGCATCCAGTCCTCGAGAGCAGCATCCCGGGCGCCTGCCCAAAGGGCGGGGACACACGCAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAGAACCGGCCGAGCGGGCGCCACTGGGCTCCAGCCAGGCCTGCGCGGGGCCACGGGCAGGGAGCTGGGGCCGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGGGCCACCACCAGGATTGGGCCACTGACGTCACGGCCCGCCATGCAGAAGAACTACAATGTGCACTTCACCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAACGCCCGGACCCCCAATGAACGATACCTTTTGGATCCCGAGTTGGGGCACCAAAAAGGATGCTGCCGTCAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGTACCAGGACCCGGTGGCCACTCACACCCATGGGCCCTATCAGCTGTCCCCCCAGGCTCACTGGCAGCAGACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TACCATAGCCACCGAGGTGGCAGCGGCTGTCGCCGGTGTCCCCAGCCCCTCATTCCGCAGCGACAGCGGCGGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCAGCAGCAGCGACAACCCCCACCCCTACCTCCCAGCCCTCTGCGGCAGCGGCTCGGTCCAGTTCGCGGGGCCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGAAGGGGTCACCCGCGATCGCCGCTGCCCGCATGGAACCAGCCAGCGCCCCCAAGCCTGTCACCTCCACACCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACCGCAGTATCAGCCACGGCCAGCAGCGGCCCAGCCCTACCCTCTGCAGCCGGCGCCCTCCTGGAGCCCAGCGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCCCACCGAGGCGCGGCCACTGCCTGCACCGGCAGCCTGCGGCTCCTTCACCTCCTACGGCGCCGACATCCTGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGAGGATGATGTCTACTGCAGCTGTCTGGCTAAAACTCTGTGTCACGTGCCCGTCCCTGTGACGGTGGGTTTC 1110
Query 1 ------------------------------------------------------ATGCAGCAGGAGGCCGCGCA 20
||||||||||||||||||||
Sbjct 1111 TACGCTCCCTTCGGCTGCCGTCTTCACTTGATGTTGGATAAAATCATGACGCTGATGCAGCAGGAGGCCGCGCA 1184
Query 21 GCGCGAGAGCGAGGAGCTGCAGCACGTGCAGTGGCGGCCGCGTGCCGTGAGCGGCTGGGGCGTCCCGCAGCTAC 94
|||.|||||||||||||||||||.|||||||||||.|||.|||..||||.|||||||||||||||||.||||.|
Sbjct 1185 GCGTGAGAGCGAGGAGCTGCAGCGCGTGCAGTGGCAGCCACGTCGCGTGCGCGGCTGGGGCGTCCCGAAGCTGC 1258
Query 95 TGTGGTACCTGGTGTTCCTGCAGCCCATCATCACCGAGGTGCACCTGCGGCGCAGGAACGTGCAGTTCCTTTTC 168
||||||.|||||||||.|||||||||.|.|||||.|||.|||||||||||||||||||.||||..|||||.|||
Sbjct 1259 TGTGGTTCCTGGTGTTTCTGCAGCCCGTGATCACGGAGCTGCACCTGCGGCGCAGGAATGTGCGCTTCCTGTTC 1332
Query 169 ATCCGCTTTAGCGCCTGGCAGTACGCGGGCACCGACAAGCTGTGGGCCGGCCTGGTGACCACGTTGTGCGAGGG 242
||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||.||||.|||||
Sbjct 1333 ATCCGCTTCAGCGCCTGGCAGTACGCGGGCACCGACAAGCTGTGGGCCGGGCTGGTGACCACGCTGTGTGAGGG 1406
Query 243 CATCCGCCGCCACTATGGCGCACTGCCCTTCAGCGTGTACTCGGTGCTGGGCAACAAGCC----GGCCACCAGG 312
||||||||.||||||.|||||.||||||||.|||||||||||||||||.||||||||||| ||||..|..|
Sbjct 1407 CATCCGCCACCACTACGGCGCGCTGCCCTTTAGCGTGTACTCGGTGCTAGGCAACAAGCCCTGTGGCCCGCGTG 1480
Query 313 CAGGACTGCTGCCAGAGCGAGTGGCATTGTCGGCGCCGCGTGTGCCTGGGGCTGCTGGCGCTGCTGGCGGCGCT 386
..||.|| ||||||..||||||||||.||.||.||.|||||||||||||.||||||||||||||||||.|||||
Sbjct 1481 ATGGCCT-CTGCCAACGCGAGTGGCACTGCCGACGTCGCGTGTGCCTGGCGCTGCTGGCGCTGCTGGCCGCGCT 1553
Query 387 GGGCCTGGGTGTGGGGCTGCTCTACTTGTCACTGGGCGGCCACGCGCTGGGCCACGGCAGCCCGAGCG-GCAGC 459
|.|||||||||||||||||||.|||.||||.|||||.||||||||||.||||||||| .||||| | |.
Sbjct 1554 GTGCCTGGGTGTGGGGCTGCTGTACCTGTCGCTGGGAGGCCACGCGCCGGGCCACGG-----AGAGCGTG--GT 1620
Query 460 CTGCTCAAGGTGTTTGGCGGCGCGGCCACCACACTGTCGGGCTCGGGGCTGCTCATGGCCGTGTACTCGGTGGG 533
.|||||||.|.|.|.|||||||||||||||||.||.||.|||||.|||||||||||||||||||||||.|||||
Sbjct 1621 GTGCTCAAAGCGCTGGGCGGCGCGGCCACCACGCTATCCGGCTCAGGGCTGCTCATGGCCGTGTACTCCGTGGG 1694
Query 534 CAAGCACCTGTTCGTAAGCCAGCGCAAGAAGATCGAGCGGCTGGTGTCGCGTGAAAAGTTCGGCAGCCAGCTGG 607
||||||.||||||||.|||||||||||||||||||||||.||||||||||||||.|||||.|||||||||.|||
Sbjct 1695 CAAGCATCTGTTCGTGAGCCAGCGCAAGAAGATCGAGCGCCTGGTGTCGCGTGAGAAGTTTGGCAGCCAGTTGG 1768
Query 608 GTTTCATGTGCGAGGTGAAGAAGGAGGTGGAGCTGCTCACCGACTTCCTGTGCTTCCTGGAGATCTACCAGCGG 681
|.|||||||||||||||||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||.
Sbjct 1769 GCTTCATGTGCGAGGTGAAGAAGGAGGTGGAACTGCTCACGGATTTCCTGTGCTTCCTGGAGATCTACCAGCGA 1842
Query 682 CGCAGGCTGCGCGTGGTGCTGGAGGTCACCGGGCTGGACACGTGCTACCCGGAGCGCGTGGTGGGCGTGCTCAA 755
|||.|||||||.|||||.||.||||||||.|||.||||||||||||||||.|||||||||||||||||.||.||
Sbjct 1843 CGCCGGCTGCGTGTGGTCCTCGAGGTCACTGGGTTGGACACGTGCTACCCAGAGCGCGTGGTGGGCGTCCTAAA 1916
Query 756 CGCCATCAACACGCTGCTGTCCGACAGCCACGCGCCCTTCATCTTCATCCTGGTCGTGGACCCCAGCATCCTGG 829
||||||||||||.||||||||||||||||||||.||||||||||||||||||||.||||||||||||||.||||
Sbjct 1917 CGCCATCAACACTCTGCTGTCCGACAGCCACGCTCCCTTCATCTTCATCCTGGTGGTGGACCCCAGCATTCTGG 1990
Query 830 CCGCGTGCCTAGAGAGCGCGGGCAACATGAAGGGCACGGCCGATAACGGCTACCTCTTCCTCAACCGCACTGTC 903
||||||||||.|||||||||||.||||||||||||||.||.||.|||||||||||.||||||||||||||.|||
Sbjct 1991 CCGCGTGCCTGGAGAGCGCGGGTAACATGAAGGGCACAGCAGACAACGGCTACCTGTTCCTCAACCGCACAGTC 2064
Query 904 ACGCTGCCCTTCTCTGTGCCCATTATGGGCCGCCGCACCAAGCTGCAGTTCCTGCACGATGCGGTGCAGAGCCG 977
|||||.||||||||.|||||.|||||||||||.|||||||||.||||||||||||||||||||||||..|||||
Sbjct 2065 ACGCTACCCTTCTCCGTGCCGATTATGGGCCGTCGCACCAAGTTGCAGTTCCTGCACGATGCGGTGCGTAGCCG 2138
Query 978 CGACGACCTGTTGTACCGCGAGATGACG-------------CGCA-AGCCGTGGCTGCCGGG-----GGACGCC 1032
.|||||.|||.|||.|||.||..||||| |||| |||| ||||| ||.|||
Sbjct 2139 GGACGATCTGCTGTTCCGGGAATTGACGATCAAGCTACAGCCGCAGAGCC-------CCGGGAACTTGGGCGC- 2204
Query 1033 GGGGGCGAGAGCGCGCAGCTGCTGGCGGTGCAGGCGCAGGCGGGGACG--GAGCGCGGGCAGGGCCGCATCGAC 1104
.||.|||.|..|.|||||||||||||||.||.||||| ||||||| ||||||...|||||||||.|.|||
Sbjct 2205 --AGGTGAGGGTACTCAGCTGCTGGCGGTGGAGACGCAG--GGGGACGCCGAGCGCACACAGGGCCGCGTGGAC 2274
Query 1105 GACGAGGCGGCGCGGCGAATCCAGGAGGCGCTCTTCTGCCTTCACGACGAGCGCGACTGCCTCTACGAGTACGT 1178
|..||||||||||||||.||||||||||||||.|.||||||.||.||||||.|.||.|||||.||.||||||||
Sbjct 2275 GCGGAGGCGGCGCGGCGTATCCAGGAGGCGCTGTGCTGCCTGCATGACGAGGGTGATTGCCTGTATGAGTACGT 2348
Query 1179 GCCCGACAACGTGGTGTCCATGCGGCGCATCGTCAACACCGTGCCCATCACCGTGCGCCTGCTNNGCAGCAGCA 1252
||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||.| |||||||||
Sbjct 2349 GCCCGACAACGTGGTGTCCATGCGGCGCATTGTCAACACGGTGCCCATCACCGTGCGCCTGTT--GCAGCAGCA 2420
Query 1253 GCAG------CAGGGGGACTTTGGGGGCCCCACGCCGCGCCAGGCGGTGGCGTGGGTGGTGCTCGCCAACCAGT 1320
|||| |||...|||...|.|||.|||||.||||||||.||||||||.|||||.||.|||||.|||||||
Sbjct 2421 GCAGCAGCAACAGCCCGACCGCGTGGGACCCACACCGCGCCACGCGGTGGCCTGGGTCGTCCTCGCTAACCAGT 2494
Query 1321 GGCCGTGCCGCCTGAGCTGGGCGCTGCAGTGCCTGGAGGACCGGCAGCAGACCGGGGGCGCGCCCGAGGGCCGC 1394
||||.||.|||||.|||||||.||||||.|||||||||||||||||||||.|.|||||||||||.|||||.|||
Sbjct 2495 GGCCTTGTCGCCTCAGCTGGGTGCTGCAATGCCTGGAGGACCGGCAGCAGGCAGGGGGCGCGCCAGAGGGGCGC 2568
Query 1395 GCGCGCCTCTGGGACGTTTTCCGCGACAACAGCCGCGAGCTGCACACCATGACCAAGGCGTTGCAGAACGTGCT 1468
.||||.||||||||.||.|||.|||||||.||.||||||||||||||||||||||||||.|||||||||||.||
Sbjct 2569 TCGCGTCTCTGGGATGTCTTCTGCGACAATAGTCGCGAGCTGCACACCATGACCAAGGCCTTGCAGAACGTACT 2642
Query 1469 CGACCTGGACGGCGACCCCGAGCTCTTCGAGCGCTTCCTGGGCGCCGACTTCCCCTTCACCGTGGCCGAGGCGC 1542
.||||||||.||||||||.|||||.||.||||||||.||.|||.|.||.|||||||||||||||||||||||||
Sbjct 2643 GGACCTGGATGGCGACCCTGAGCTTTTTGAGCGCTTTCTAGGCACTGATTTCCCCTTCACCGTGGCCGAGGCGC 2716
Query 1543 AGAGCCTGCTGCGCTGCACGGTCAACCTGGACCACTCCATCCGCCGGCGCATGGGTCTCATCCGAGCCGTCAGC 1616
||||..|||||||||||||.||||||||||||||.|||||||||||.||||||||.||||||.|.|||||||||
Sbjct 2717 AGAGTTTGCTGCGCTGCACAGTCAACCTGGACCATTCCATCCGCCGCCGCATGGGCCTCATCAGGGCCGTCAGC 2790
Query 1617 GCGCTCAAGCCGCCCAGCCCGCCCAAGTCCCCTACCCGCGATACCCCCCACGC---TGCCCACCGGGCCAACAG 1687
||||||||||||||||||||.|||||||||||..|||..||....|||||.|| | |||| |.||||..|.
Sbjct 2791 GCGCTCAAGCCGCCCAGCCCACCCAAGTCCCCATCCCAGGACGGTCCCCAGGCCAGT-CCCA--GAGCCATTAT 2861
Query 1688 CGCCTCCAGG-GCGCCCCCGTCGGGCCGTGCCTCAGGGC------AAGCCGGCGAAGGC-CACCACACTGGGGA 1753
|||| .|||| .||.|||...||||||..|..|||||.| ||| |||| ||.||.||..||||
Sbjct 2862 CGCC-GCAGGCACGTCCCATGCGGGCCAAGGATCAGGACACAGTAAAG-------AGGCACATCAGACCCGGGA 2927
Query 1754 CTTGGCCCACAGGGGCAAGCTATGGCCGGTGGCCTGTGCGCTCTTCCGTCCAGGGCAATCCAGCCCAGGTGGGC 1827
|..|.||||..|||||||||.|.|||||.|||||
Sbjct 2928 CCGGACCCATGGGGGCAAGCCAAGGCCGATGGCC---------------------------------------- 2961
Query 1828 CT 1829
Sbjct 2962 -- 2961
