Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14524
- Subject:
- XR_001748704.2
- Aligned Length:
- 3325
- Identities:
- 2121
- Gaps:
- 1007
Alignment
Query 1 -----------------------ATGAGACTGTTCGTGAGTGATGGCGTCCCGGGTTGCTTGCCGGTGCTGGCC 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCAGCGAGGGATTCACGGCGAAATGAGACTGTTCGTGAGTGATGGCGTCCCGGGTTGCTTGCCGGTGCTGGCC 74
Query 52 GCCGCCGGGAGAGCCCGGGGCAGAGCAGAGGTGCTCATCAGCACTGTAGGCCCGGAAGATTGTGTGGTCCCGTT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GCCGCCGGGAGAGCCCGGGGCAGAGCAGAGGTGCTCATCAGCACTGTAGGCCCGGAAGATTGTGTGGTCCCGTT 148
Query 126 CCTGACCCGGCCTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTCTTCTCCACTAGTGCAATCTGCC 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCTGACCCGGCCTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTCTTCTCCACTAGTGCAATCTGCC 222
Query 200 GATATTTTTTTTTGTTATCTGGCTGGGAGCAAGATGACCTCACTAACCAGTGGCTGGAATGGGAAGCGACAGAG 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATATTTTTTTTTGTTATCTGGCTGGGAGCAAGATGACCTCACTAACCAGTGGCTGGAATGGGAAGCGACAGAG 296
Query 274 CTGCAGCCAGCTTTGTCTGCTGCCCTGTACTATTTAGTGGTCCAAGGCAAGAAGGGGGAAGATGTTCTTGGTTC 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTGCAGCCAGCTTTGTCTGCTGCCCTGTACTATTTAGTGGTCCAAGGCAAGAAGGGGGAAGATGTTCTTGGTTC 370
Query 348 AGTGCGGAGAGCCCTGACTCACATTGACCACAGCTTGAGTCGTCAGAACTGTCCTTTCCTGGCTGGGGAGACAG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGTGCGGAGAGCCCTGACTCACATTGACCACAGCTTGAGTCGTCAGAACTGTCCTTTCCTGGCTGGGGAGACAG 444
Query 422 AATCTCTAGCCGACATTGTTTTGTGGGGAGCCCTATACCCATTACTGCAAGATCCCGCCTACCTCCCTGAGGAG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AATCTCTAGCCGACATTGTTTTGTGGGGAGCCCTATACCCATTACTGCAAGATCCCGCCTACCTCCCTGAGGAG 518
Query 496 CTGAGTGCCCTGCACAGCTGGTTCCAGACACTGAGTACCCAGGAACCATGTCAGCGAGCTGCAGAGACTGTACT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTGAGTGCCCTGCACAGCTGGTTCCAGACACTGAGTACCCAGGAACCATGTCAGCGAGCTGCAGAGACTGTACT 592
Query 570 GAAACAGCAAGGTGTCCTGGCTCTCCGGCCTTACCTCCAAAAGCAGCCCCAGCCCAGCCCCGCTGAGGGAAGGG 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAAACAGCAAGGTGTCCTGGCTCTCCGGCCTTACCTCCAAAAGCAGCCCCAGCCCAGCCCCGCTGAGGGAAGGG 666
Query 644 CTGTCACCAATGAGCCTGAGGAGGAGGAGCTGGCTACCCTATCTGAGGAGGAGATTGCTATGGCTGTTACTGCT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTGTCACCAATGAGCCTGAGGAGGAGGAGCTGGCTACCCTATCTGAGGAGGAGATTGCTATGGCTGTTACTGCT 740
Query 718 TGGGAGAAGGGCCTAGAAAGTTTGCCCCCGCTGCGGCCCCAGCAGAATCCAGTGTTGCCTGTGGCTGGAGAAAG 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGGGAGAAGGGCCTAGAAAGTTTGCCCCCGCTGCGGCCCCAGCAGAATCCAGTGTTGCCTGTGGCTGGAGAAAG 814
Query 792 GAATGTGCTCATCACCAGTGCCCTCCCTTACGTCAACAATGTCCCCCACCTTGGGAACATCATTGGTTGTGTGC 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAATGTGCTCATCACCAGTGCCCTCCCTTACGTCAACAATGTCCCCCACCTTGGGAACATCATTGGTTGTGTGC 888
Query 866 TCAGTGCCGATGTCTTTGCCAGGTACTCTCGCCTCCGCCAGTGGAACACCCTCTATCTGTGTGGGACAGATGAG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCAGTGCCGATGTCTTTGCCAGGTACTCTCGCCTCCGCCAGTGGAACACCCTCTATCTGTGTGGGACAGATGAG 962
Query 940 TATGGTACAGCAACAGAGACCAAGGCTCTGGAGGAGGGACTAACCCCCCAGGAGATCTGCGACAAGTACCACAT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TATGGTACAGCAACAGAGACCAAGGCTCTGGAGGAGGGACTAACCCCCCAGGAGATCTGCGACAAGTACCACAT 1036
Query 1014 CATCCATGCTGACATCTACCGCTGGTTTAACATTTCGTTTGATATTTTTGGTCGCACCACCACTCCACAGCAGA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CATCCATGCTGACATCTACCGCTGGTTTAACATTTCGTTTGATATTTTTGGTCGCACCACCACTCCACAGCAGA 1110
Query 1088 CCAAAATCACCCAGGACATTTTCCAGCAGTTGCTGAAACGAGGTTTTGTGCTGCAAGATACTGTGGAGCAACTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCAAAATCACCCAGGACATTTTCCAGCAGTTGCTGAAACGAGGTTTTGTGCTGCAAGATACTGTGGAGCAACTG 1184
Query 1162 CGATGTGAGCACTGTGCTCGCTTCCTGGCTGACCGCTTCGTGGAGGGCGTGTGTCCCTTCTGTGGCTATGAGGA 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CGATGTGAGCACTGTGCTCGCTTCCTGGCTGACCGCTTCGTGGAGGGCGTGTGTCCCTTCTGTGGCTATGAGGA 1258
Query 1236 GGCTCGGGGTGACCAGTGTGACAAGTGTGGCAAGCTCATCAATGCTGTCGAGCTTAAGAA-----AATGGA--- 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |.||.|
Sbjct 1259 GGCTCGGGGTGACCAGTGTGACAAGTGTGGCAAGCTCATCAATGCTGTCGAGCTTAAGAAGCCTCAGTGTAAAG 1332
Query 1302 GCTGGCGCTGGTG-CCTGTGAGCGC-------CCACGGCAAC---TTCTATGAGGGGGA-CTG-CTACGTCATC 1362
.|||.||.|..|| |||||| |.|| ||| |||.| |||| ||| ||| |||.|
Sbjct 1333 TCTGCCGATCATGCCCTGTG-GTGCAGTCGAGCCA--GCACCTGTTTCT-------GGACCTGCCTAAG----- 1391
Query 1363 CTCT-------CGACCCGGA-GAGTG-------------------GCCAGT--CT------CCTAT-CCCAGGA 1400
|| ||| |.||| ||||| |.|||| || ||.|| |||||..
Sbjct 1392 --CTGGAGAAGCGA-CTGGAGGAGTGGTTGGGGAGGACATTGCCTGGCAGTGACTGGACACCCAATGCCCAGTT 1462
Query 1401 CATCCAC---TTCT--GGATCGGGAAGGACTCCTCCCAGGATGAGCAAAGCTGCGCAGCCATATATACCACACA 1469
.|| ||| |||| |..||||||.||.||| .|||.|.|||| |||| |||
Sbjct 1463 TAT-CACCCGTTCTTGGCTTCGGGATGGCCTC----------AAGCCACGCTG------CATA---ACC----- 1511
Query 1470 GCTGGACGACTACCT------GGGAGGCAGCCCTGTGCAGCACC----GAGAGGT--------CCAG---TACC 1522
||| .|||| |||| |.|||||| ||| || |||| |.|| |.|.
Sbjct 1512 ------CGA-GACCTCAAATGGGGA---ACCCCTGT-----ACCCTTAGA-AGGTTTTGAAGACAAGGTATTCT 1569
Query 1523 ATG---AGTCAGA---CACTTTCCGTGGCTA-CT-TCAAGCAGGGCATCATCTACA---AGCAGGGGGGTGTCG 1585
||| .||..|| ||||.| |||||| || ||.|.||..|| ||.||||| |.|||.|||
Sbjct 1570 ATGTCTGGTTTGATGCCACTAT---TGGCTATCTGTCCATCACAGC--CAACTACACAGACCAGTGGG------ 1632
Query 1586 CCTCTGGGATGAAGCACGTGGAGACCAATACCTACGACGTGAAGCGGCTGCTACATGTGAAAGGGAAAAGAAAC 1659
.|.|||| |||| |||||.|
Sbjct 1633 ----AGAGATG------GTGG----------------------------------------------AAGAACC 1650
Query 1660 ATCAGGGCTA-CCGAGGTGGAAATGAGCTG-GGACAGTTTCAACCGAGGTGATGTCTTCTTGCTGGACCTTGGG 1731
|||.||.| ||.|| |||||| ||| |..||..|||||||
Sbjct 1651 --CAGAGCAACCCTAG--------GAGCTGAGGA-------------------------TAACTATACCTTGG- 1688
Query 1732 AAAGTCATCATCCAATGGAATGGCCCAGAGAGCAACAGTGGGGAGCGCCTGAAGGCTATGCTTCTGGCAAAGGA 1805
|||.||| ||..|..||.||| |||..|||||| ||||| ||||
Sbjct 1689 -------TCAGCCA----------CCTCATTGCTACA-----GAGTACCTGAA--CTATG----------AGGA 1728
Query 1806 T-----ATTC---GAGACAGGGAGCGAGGGGGCCGTGCTGAAATAGGAGTGATCGAGGGAGACAAGGAGGCAGC 1871
| |||| .||| ||||.|.|| |.||||||.| .||.||||.| ||
Sbjct 1729 TGGGAAATTCTCTAAGA--------------GCCGCGGTG---TGGGAGTGTT---TGGGGACATG------GC 1776
Query 1872 CAGCCCAGAGCTGATGAAGGTCCTTCAGGACACCCTTGGCCGACGCTCCATTATCAAGCCTACAGTCCCTGATG 1945
| |||||||| |..|| ||||||.||
Sbjct 1777 C------------------------CAGGACAC-----GGGGA----------------------TCCCTGCTG 1799
Query 1946 AGATCATAGATCAGAAGCAGAAAT----CAACTATCATGTTGTATCATATCTCAGATTCAGCTGGGCAGCTGGC 2015
|.||| | |..||||| ||.||| |.||||
Sbjct 1800 ACATC------------------TGGCGCTTCTATC-TGCTGT----------ACATTC--------------- 1829
Query 2016 AGTCACAGAGGTAGCAACAAGGCCTCTGGTCCAGGACTTACTGAACCATGATGACTGCTACATCCTGGACCAAA 2089
|||||..||.||||||| |.||||...||||||||
Sbjct 1830 --------------------GGCCTGAGGGCCAGGAC----------------AGTGCTTTCTCCTGGAC---- 1863
Query 2090 GTGGAACCAAAATCTACGTGTGGAAAGGAAAA----GGAGCCACAAAGGCTGAAAAACAGGCAGCCATGTCTAA 2159
|| |.||.| ||..||| |||.| .|||| .|||.||.|||
Sbjct 1864 --GG-------ACCTGC-TGCTGAA--GAATAATTCTGAGC------TGCTTAACAAC---------------- 1903
Query 2160 AGCGCTGGG---CTTCATCAAGATGAAGAGCTACCCCAGCAGCACCAATGTGGAGACCGTCAACGATG---GTG 2227
||||| ||||||||| .||||| ||| |||| |||
Sbjct 1904 ----CTGGGCAACTTCATCAA----CAGAGC-------------------TGG-----------GATGTTTGTG 1939
Query 2228 -CTGAGT-------CGGCCATGTTCAAGCAGCTGTT-------CCAGAAGTGGTCAG----TAAAGGACCA--- 2279
||.||| .|||.||||.|..| ||.||.| ||.|| ||.|||| |...||.|||
Sbjct 1940 TCTAAGTTCTTTGGGGGCTATGTGCCTG-AGATGGTGCTCACCCCTGA--TGATCAGCGCCTGCTGGCCCATGT 2010
Query 2280 GACCATGG-GCCTGGGGAAAACGTTCAGCATTGGTAAAAT----TGCTA------AAGTTT----TCCAGGATA 2338
.|||.||| || |.|||||.| || .|||| |||.|| |||.|||
Sbjct 2011 CACCCTGGAGC------------TCCAGCACT------ATCACCAGCTACTTGAGAAGGTTCGGATCCGGGA-- 2064
Query 2339 AATTTGATGTGACTCTGC------TACACACCAAGCCAGAGGTAGCTGCCCAGGAAAGAATGGTCGATGATGGC 2406
||.|| ||| |.|.||||| ||.| |||| .|||||
Sbjct 2065 ---------TGCCT-TGCGCAGTATCCTCACCA---------TATC-----------------TCGA-CATGGC 2101
Query 2407 AACGGAAAAGTTGAGGTCTGGAGAATTGAGAACCTGG-AGCTGGTCCCTGTGGAGTATCAATG--GTATGGCTT 2477
|||..|.|..||.|||| ||| |||| .||||| ||| |||.|| ||.| ||..|||
Sbjct 2102 AACCAATATATTCAGGT-----GAA-TGAG-CCCTGGAAGC----------GGATTA--AAGGCAGTGAGGC-- 2154
Query 2478 CTTTTATG---------GGGGAG--ACTGTTATCTGGTCCTCTACACATACGAGGTAAATGGGA-AGCCACATC 2539
|| |||.|| ||.||.| |||| ||...|| ||.||| | |||..|
Sbjct 2155 ------TGACAGGCAACGGGCAGGAACAGTGA-CTGG--CTTGGCA--------GTGAAT---ATAGCTGC--- 2205
Query 2540 ACATCTTGTACATCTGGCAGG-----GCC-------GCCAC-------GCCTCA---CAGGATGAGCTGGCAGC 2591
||||..| ||||.||.| ||| .|||| |||.|| ||||...|||| |||||
Sbjct 2206 ----CTTGCTC-TCTGTCATGCTTCAGCCTTACATGCCCACGGTTAGTGCCACAATCCAGGCCCAGCT-GCAGC 2273
Query 2592 -CTCAGCATACCAG---GCAGTGGAGGTGGATCGGCAGTTTGATGGGGCTG---------CTGTGCAGGTT-CG 2651
|.||.| .|||| ||||| ||...|||| |||||.|..|| |.
Sbjct 2274 TCCCACC--TCCAGCCTGCAGT--------------------ATCCTGCTGACAAACTTCCTGTGTACCTTACC 2325
Query 2652 AGTCAG-------GATGGGAACGGAGCCACGCCACTT----------------CATGGCCATCTTCAAAG---- 2698
|| ||| |||.||.|| ||.|| |.|.||| .|||.|||..||.||||
Sbjct 2326 AG-CAGGACACCAGATTGGCAC--AGTCA-GTCCCTTGTTCCAAAAATTGGAAAATGACCAGATTGAAAGTTTA 2395
Query 2699 -GGAAGCTAGTTATCTTT-GAGGGTGGGACTTCCAGG-AAGGGAAATG---CCG-AGCCTGACCCTCCAGT--- 2762
||.||| .|||| |||||.| ||||| || |||.| ||| ||||.| ||||
Sbjct 2396 AGGCAGC------GCTTTGGAGGGGG------CCAGGCAA---AAACGTCCCCGAAGCCAG------CAGTTGT 2448
Query 2763 -AAGACTCTTCCAAATTCATGGAAATGACAAATCTAACACCA-----AAGCAGTG------GAAGTTCCAGCCT 2824
.|||||.||.||| || |.|||..| |||.|| ||||..|| |||||..||
Sbjct 2449 AGAGACTGTTACAA---CA-------GCCAAGCC--ACAGCAGATACAAGCGCTGATGGATGAAGTGACA---- 2506
Query 2825 TTGCCTCCTCCCTAAACTCCAATGA-----TGTCTTTCTGCTGCGAACT----------CAGGCAGAGCACTAC 2883
||| |||.|| ||| |.|.||||| .|||||||..|..||
Sbjct 2507 -------------AAA---CAAGGAAACATTGT-------CCGAGAACTGAAAGCACAAAAGGCAGACAAGAAC 2557
Query 2884 -------CTGTGGTA--TGGC----------------AAG-----GTAGGATG--GCTGGGCCCCGGGTCAGAC 2925
|||.|| | |||| ||| ||.||.|| ||||.| ||| |.||
Sbjct 2558 GAGGTTGCTGCGG-AGGTGGCGAAACTCTTGGATCTAAAGAAACAGTTGGCTGTAGCTGAG----GGG--AAAC 2624
Query 2926 CAGCCCCTCGGAGCCC----AGACCTGCACTCCCCTCCTCCTGTCAGCAAG--GTCAAANGACCTAGAG 2988
||||| |.||||| || ||||| |..|||
Sbjct 2625 ---CCCCT-GAAGCCCCTAAAG------------------------GCAAGAAGAAAAA---------- 2655
