Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14562
• Subject: NM_001174053.1
• Aligned Length: 1655
• Identities: 1165
• Gaps: 240

Alignment

Query    1  ATGGCCACCA---TCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGA-ATTGGGCAAGGGAGCCT  70
            ||||||||||   |.|||||||||||.|||||.||.|||||||||||.|.|||||| ||| ||||||||.||.|
Sbjct    1  ATGGCCACCACGGTGACCTGCACCCGTTTCACCGACGAGTACCAGCTATACGAGGATATT-GGCAAGGGGGCTT  73

Query   71  TCTCGGTGGTGCGAAGGTGTGTGAAGGTGCTG-GCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAA  143
            ||||.|||||.|||.|.|||||.|||.| ||| .|.|||||.||||||||.|||||||||||.||.||.|||||
Sbjct   74  TCTCTGTGGTCCGACGCTGTGTCAAGCT-CTGTACCGGCCATGAGTATGCAGCCAAGATCATTAATACCAAGAA  146

Query  144  GCTGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCG  217
            ||||||.||||||||.||.|||||.||||||.|.|||||.||.||||||||||||||||||||..|||||||.|
Sbjct  147  GCTGTCGGCCAGAGATCACCAGAAACTGGAGAGAGAAGCTCGGATCTGCCGCCTGCTGAAGCATTCCAACATTG  220

Query  218  TCCGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTG  291
            |.||.||.||||||||||||||.||.|||||...||||||||||.|||||||.|||||||||||||||||.||.
Sbjct  221  TACGCCTCCATGACAGCATCTCTGAAGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTC  294

Query  292  TTTGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGC  365
            ||||||||.||||||||..|.|||||.||||||||.||.||||||||||||||.|||||||||||||||||.||
Sbjct  295  TTTGAAGACATCGTGGCAAGAGAGTACTACAGTGAAGCTGATGCCAGTCACTGCATCCAGCAGATCCTGGAAGC  368

Query  366  TGTGCTGCACTGCCACCAGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTGTTGCTGGCCTCCAAGC  439
            |||.||.||.||.|||||.||||||||.||.|||.|.|||||.|||||||||||.|||.|.||||||..|||..
Sbjct  369  TGTTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCTGAGAACCTGCTTCTGGCCAGCAAAT  442

Query  440  TCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGGTTT  513
            .|||.||.|||||||||||||||||||||||.|||||||||||.|||||..||||.||.|||||||||||||||
Sbjct  443  GCAAAGGCGCCGCAGTGAAGCTGGCAGACTTCGGCCTGGCCATCGAGGTTCAGGGAGACCAGCAGGCATGGTTT  516

Query  514  GGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGACCT  587
            ||.|||||.||.||.||.||.||.||.||.||.||.||.||.||||||||..|.|||||.||.|||||||||.|
Sbjct  517  GGATTTGCGGGAACGCCAGGCTACCTGTCTCCCGAGGTCCTTCGGAAGGAGGCCTACGGCAAACCTGTGGACAT  590

Query  588  GTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACCGCC  661
            .|||||.||||||||.||||||||.|||||||||||.||.|||||.||.|||||||||||||||||.|||...|
Sbjct  591  CTGGGCATGTGGGGTGATCCTGTATATCCTGCTGGTGGGCTACCCACCTTTCTGGGATGAGGACCAACACAAGC  664

Query  662  TGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGCCAA  735
            ||||||||||||||||.||.|| |.|.||||||||||||||.||.||.||||||||.||.||.||.||||||||
Sbjct  665  TGTACCAGCAGATCAAGGCTGG-GGCGTATGATTTCCCATCCCCTGAGTGGGACACCGTTACTCCTGAAGCCAA  737

Query  736  GGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCC--GAAGCCATTAAGCACCC  807
            ..|.||.|||||..|||||||||||||.|||||..||||.||||||||.||  ||  ||.|||.|.||||||||
Sbjct  738  AAACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACGGC--CCATGAGGCCCTGAAGCACCC  809

Query  808  CTGGATCTCGCACCGCTCCACCGTGGCATC-GTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTTC  880
            .|||.|||..||.||.|||||||||||.|| .|| |||||||||||||||||.|||||.||.||||||||||||
Sbjct  810  ATGGGTCTGCCAACGTTCCACCGTGGCCTCTATG-ATGCACAGACAGGAGACTGTGGAATGTCTGAAGAAGTTC  882

Query  881  AATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGAG  954
            |||||.||||||||.||.|||||||||||.||||||||.|||||||||||..||||.|||||   ||..|||||
Sbjct  883  AATGCAAGGAGGAAGCTCAAGGGAGCCATCCTCACCACTATGCTGGCCACACGGAATTTCTC---AGCCAAGAG  953

Query  955  TGGGGGAAACAAGAAGAGC-GATGGTGTGAA-------------------------------------------  984
            |......|||||||| ||| |||||.||.||                                           
Sbjct  954  TTTACTCAACAAGAA-AGCAGATGGAGTCAAGCCCCAGACAAACAGCACCAAAAACAGCTCGGCCATCACCAGC  1026

Query  985  -----------------------------GGAATCCTCAGAGAGCACCAACACCACCATCGAGGATGAAGACAC  1029
                                         ||||||.||.||.|||||||||||.|||||.|||||||||||..|
Sbjct 1027  CCCAAAGGATCTCTCCCTCCTGCTGCCCTGGAATCTTCCGACAGCACCAACACAACCATAGAGGATGAAGATGC  1100

Query 1030  CAAAG-------------TG------------------------------------------------------  1036
            |||||             ||                                                      
Sbjct 1101  CAAAGCCCCCAGGATCTCTGACATCCTCAACTCAGTGAGGCGGGGCTCAGGGACCCCAGAAGCTGAGGGCCTCC  1174

Query 1037  --------------------------------------------------------------CGGAAACAGGAA  1048
                                                                          |||||.||||||
Sbjct 1175  CACCAGTGGGCCCCCCACCCTGCCCATCTCCGACTCTCCCTGGCCCCTTGCCCACCCCATCCCGGAAGCAGGAA  1248

Query 1049  ATTATAAAAGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGAGTCCTACACGAAGATGTGCGA  1122
            ||.||.||....|||||||||||.|||||.|||.|.|.||||||.||.||||||.||||..||||.||.||.||
Sbjct 1249  ATCATCAAGACCACAGAGCAGCTCATTGAGGCCGTCAACAATGGGGACTTTGAGGCCTATGCGAAAATCTGTGA  1322

Query 1123  CCCTGGCATGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCCTGGACTTCCATCGATTCTATT  1196
            |||.|||.||||..|.||.||.|||||.||.|||||.||||||||.||.||..||||.|||||..|||||||.|
Sbjct 1323  CCCAGGCCTGACCTCATTTGAGCCTGAAGCTCTGGGCAACCTGGTCGAAGGGATGGATTTCCACAGATTCTACT  1396

Query 1197  TTGAAAACCTG-TGGTCCCGGAACAGCAAGCCCGTGCACACCACCATCCTGAATCCCCACATCCACCTGATGGG  1269
            ||||.|||||| ||| ||..||||||||||||..|.|||||||||||||||||.||.|||.|.|||.|.||.||
Sbjct 1397  TTGAGAACCTGCTGG-CCAAGAACAGCAAGCCGATCCACACCACCATCCTGAACCCGCACGTGCACGTCATTGG  1469

Query 1270  CGACGAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGACGCTGGC---GGCATCCCACGCACCG  1340
            |||.||..|.||.||||||||||||||||||.||||.||||||.|   ||.||||   ||||..||.||.|||.
Sbjct 1470  CGAGGATGCGGCATGCATCGCCTACATCCGCCTCACACAGTACAT---CGATGGCCAGGGCAGACCCCGTACCA  1540

Query 1341  CCCAGTCGGAGGAGACCCGTGTCTGGCACCGCCGGGACGGCAAATGGCAGATCGTCCACTTCCACAGATCTGGG  1414
            .||||||.||.|||||||||||.|||||||||||.||||||||.|||||||..||.||.||||||.|  ||.||
Sbjct 1541  GCCAGTCCGAAGAGACCCGTGTGTGGCACCGCCGCGACGGCAAGTGGCAGAATGTACATTTCCACTG--CTCGG  1612

Query 1415  GCGCCCTCC-GTCCTGCCCCAC-----  1435
            |||  |||| ||  .|||||.|     
Sbjct 1613  GCG--CTCCAGT--GGCCCCGCTGCAG  1635