Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14562
- Subject:
- NM_001321573.2
- Aligned Length:
- 1591
- Identities:
- 1081
- Gaps:
- 175
Alignment
Query 1 ATGG---CCACCATCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGAATTGGGCAAGGGAGCCTT 71
|||| |.||||..|||||||||.|.||||||||.|||||.|||||.||||||||..|.||.|||||.||.||
Sbjct 1 ATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATT 74
Query 72 CTCGGTGGTGCGAAGGTGTGTGAAGGTGCTGGCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAAGC 145
|||.||||||.||||.|||.||||..|.|...||||.||.||.|||||||||||.||.||||||||.||.||||
Sbjct 75 CTCAGTGGTGAGAAGATGTATGAAAATTCCTACTGGACAAGAATATGCTGCCAAAATTATCAACACCAAAAAGC 148
Query 146 TGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCGTC 219
|.||.||.||.||.||||||||.||.||..|.|||||..|.||||||||.||..||||||||||.||.||.||.
Sbjct 149 TTTCTGCTAGGGATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTGTG 222
Query 220 CGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTGTT 293
|||||.|||||.|||||.|||||.|||||....||||||.||.|.||.||..|.||.|||||.||.||||||||
Sbjct 223 CGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTTAGTTACTGGAGGTGAACTGTT 296
Query 294 TGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCTG 367
||||||.||.|||||..|.||.||.||||||||.||.|||||||||||.|||||.||||||||.||.||...||
Sbjct 297 TGAAGACATAGTGGCAAGAGAATACTACAGTGAAGCTGATGCCAGTCATTGTATACAGCAGATTCTAGAAAGTG 370
Query 368 TGCTGCACTGCCACC-AGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTG----TTGCTGGCCTCCA 436
|....||.||.|||| |.|| ||..|.||.|||.||||||||||||||||||||.|| |.|||.| ||
Sbjct 371 TTAATCATTGTCACCTAAAT-GGCATAGTTCACAGGGACCTGAAGCCTGAGAATTTGCTTTTAGCTAG----CA 439
Query 437 AGCTCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGG 510
|...||||||.||.||.|||||..||||||||||||||.|.||||||||.||..|.|||||.||||||||.|||
Sbjct 440 AATCCAAGGGAGCAGCTGTGAAATTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGGGACCAGCAGGCGTGG 513
Query 511 TTTGGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGA 584
|||||.|||||.||.||.|||||||||||.||.||||||||..|.||.||.||.||.||.||.|||||.|||||
Sbjct 514 TTTGGTTTTGCTGGCACACCTGGATATCTTTCTCCAGAAGTTTTACGTAAAGATCCTTATGGAAAGCCAGTGGA 587
Query 585 CCTGTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACC 658
..|||||||.|||||.|||||.||.||.||.||.||.||.|||||.||.||.|||||||||||.|||||.|||.
Sbjct 588 TATGTGGGCATGTGGTGTCATTCTCTATATTCTACTTGTGGGGTATCCACCCTTCTGGGATGAAGACCAACACA 661
Query 659 GCCTGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGC 732
|.||.||.|||||||||||.||.||.| ||||||||||.|||||.||.|||||||||||.||.||.||.|||||
Sbjct 662 GACTCTATCAGCAGATCAAGGCTGGAG-CTTATGATTTTCCATCACCAGAATGGGACACGGTGACTCCTGAAGC 734
Query 733 CAAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCCGAAGCCATTAAGCACC 806
|||.||.||.||||||||.|||||.||.||.|||||..||||||||||||||||..|.||.||..|.|||||||
Sbjct 735 CAAAGACCTCATCAATAAAATGCTTACTATCAACCCTGCCAAACGCATCACAGCCTCAGAGGCACTGAAGCACC 808
Query 807 CCTGGATCTCGCACCGCTCCACCGTGGCAT-CGTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTT 879
|.|||||||..||.||.||.||.||.||.| |.|| |||||||||||||||||.||.||||||.|||||||.||
Sbjct 809 CATGGATCTGTCAACGTTCTACTGTTGCTTCCATG-ATGCACAGACAGGAGACTGTAGACTGCTTGAAGAAATT 881
Query 880 CAATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGA 953
.|||||.||.||.|||||.|||||.|||||..|.||.||.||||||||.||.|||||.|||||.|.||..||||
Sbjct 882 TAATGCTAGAAGAAAACTAAAGGGTGCCATCTTGACAACTATGCTGGCTACAAGGAATTTCTCAGCAGCCAAGA 955
Query 954 ----GTGGGGGAAAC-----------AAGAAGAG-----------CGATGGTG------TGAAGG--------- 986
||.|..||||| |||||.|| ||| ||| |||.||
Sbjct 956 GTTTGTTGAAGAAACCAGATGGAGTAAAGAAAAGGAAGTCCAGTTCGA--GTGTTCAGATGATGGAGCCCCAAA 1027
Query 987 -------AATCCTCA--------------------------GAGAGCACCAACACCACCATCGAGGATGAAGAC 1027
|||||.|| |||||..|.||.||.||.||.|||||||||||.
Sbjct 1028 CTACTGTAATCCACAACCCTGATGGAAACAAGGAGTCAACTGAGAGTTCAAATACAACAATTGAGGATGAAGAT 1101
Query 1028 ACCAAAGTGCGGAAACAGGAAATTATAAAAGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGA 1101
...||||..||.||.||.||.|||||.|||||.||.||.||.|||||.|||||.||.|.||||||.||.|||||
Sbjct 1102 GTGAAAGCACGAAAGCAAGAGATTATCAAAGTCACTGAACAACTGATCGAAGCTATCAACAATGGGGACTTTGA 1175
Query 1102 GTCCTACACGAAGATGTGCGACCCTGGCATGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCC 1175
..|||||||.||.||.||.|||||.|||.|.||.||.||.||||||||.||..||||.||..|.||.||.||..
Sbjct 1176 AGCCTACACAAAAATCTGTGACCCAGGCCTTACTGCTTTTGAACCTGAAGCTTTGGGTAATTTAGTGGAAGGGA 1249
Query 1176 TGGACTTCCATCGATTCTATTTTGAAAACCTG--TGGTCCCGGAACAGC---AAGCCCGTGCACACCACCATCC 1244
||||.||.||.||||||||.|||||||| || |.|||| ||.||| ||.||..|.|||||.|..||.|
Sbjct 1250 TGGATTTTCACCGATTCTACTTTGAAAA--TGCTTTGTCC---AAAAGCAATAAACCAATCCACACTATTATTC 1318
Query 1245 TGAATCCCCACATCCACCTGATGGGCGACGAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGAC 1318
|.||.||.||..|.||.|||.|.||.||.||..|.||||||||.||.||.||..|..||||.||||||.||||
Sbjct 1319 TAAACCCTCATGTACATCTGGTAGGGGATGATGCCGCCTGCATAGCATATATTAGGCTCACACAGTACATGGA- 1391
Query 1319 GCTGGC---GGCATCCCACGCACCGCCCAGTCGGAGGAGACCCGTGTCTGGCACCGCCGGGACGGCAAATGGCA 1389
|||| ||.||.|||...||....|||||.||.|||||.|||||.||||||||||||||.||.||.|||||
Sbjct 1392 --TGGCAGTGGAATGCCAAAGACAATGCAGTCAGAAGAGACTCGTGTGTGGCACCGCCGGGATGGAAAGTGGCA 1463
Query 1390 GATCGTCCACTTCCACAGATCTGGGGCGCCCTCCGTCCTGCC------CCAC---------------------- 1435
||..||.||.||.||..|.||.|||.|.||..|.||.| || ||||
Sbjct 1464 GAATGTTCATTTTCATCGCTCGGGGTCACCAACAGTAC--CCATCAAGCCACCCTGTATTCCAAATGGGAAAGA 1535
Query 1436 ------------------------------------- 1435
Sbjct 1536 AAACTTCTCAGGAGGCACCTCTTTGTGGCAAAACATC 1572