Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14562
• Subject: NM_001321574.2
• Aligned Length: 1521
• Identities: 1071
• Gaps: 113

Alignment

Query    1  ATGG---CCACCATCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGAATTGGGCAAGGGAGCCTT  71
            ||||   |.||||..|||||||||.|.||||||||.|||||.|||||.||||||||..|.||.|||||.||.||
Sbjct    1  ATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATT  74

Query   72  CTCGGTGGTGCGAAGGTGTGTGAAGGTGCTGGCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAAGC  145
            |||.||||||.||||.|||.||||..|.|...||||.||.||.|||||||||||.||.||||||||.||.||||
Sbjct   75  CTCAGTGGTGAGAAGATGTATGAAAATTCCTACTGGACAAGAATATGCTGCCAAAATTATCAACACCAAAAAGC  148

Query  146  TGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCGTC  219
            |.||.||.||.||.||||||||.||.||..|.|||||..|.||||||||.||..||||||||||.||.||.||.
Sbjct  149  TTTCTGCTAGGGATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTGTG  222

Query  220  CGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTGTT  293
            |||||.|||||.|||||.|||||.|||||....||||||.||.|.||.||..|.||.|||||.||.||||||||
Sbjct  223  CGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTTAGTTACTGGAGGTGAACTGTT  296

Query  294  TGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCTG  367
            ||||||.||.|||||..|.||.||.||||||||.||.|||||||||||.|||||.||||||||.||.||...||
Sbjct  297  TGAAGACATAGTGGCAAGAGAATACTACAGTGAAGCTGATGCCAGTCATTGTATACAGCAGATTCTAGAAAGTG  370

Query  368  TGCTGCACTGCCACC-AGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTG----TTGCTGGCCTCCA  436
            |....||.||.|||| |.|| ||..|.||.|||.||||||||||||||||||||.||    |.|||.|    ||
Sbjct  371  TTAATCATTGTCACCTAAAT-GGCATAGTTCACAGGGACCTGAAGCCTGAGAATTTGCTTTTAGCTAG----CA  439

Query  437  AGCTCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGG  510
            |...||||||.||.||.|||||..||||||||||||||.|.||||||||.||..|.|||||.||||||||.|||
Sbjct  440  AATCCAAGGGAGCAGCTGTGAAATTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGGGACCAGCAGGCGTGG  513

Query  511  TTTGGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGA  584
            |||||.|||||.||.||.|||||||||||.||.||||||||..|.||.||.||.||.||.||.|||||.|||||
Sbjct  514  TTTGGTTTTGCTGGCACACCTGGATATCTTTCTCCAGAAGTTTTACGTAAAGATCCTTATGGAAAGCCAGTGGA  587

Query  585  CCTGTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACC  658
            ..|||||||.|||||.|||||.||.||.||.||.||.||.|||||.||.||.|||||||||||.|||||.|||.
Sbjct  588  TATGTGGGCATGTGGTGTCATTCTCTATATTCTACTTGTGGGGTATCCACCCTTCTGGGATGAAGACCAACACA  661

Query  659  GCCTGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGC  732
            |.||.||.|||||||||||.||.||.| ||||||||||.|||||.||.|||||||||||.||.||.||.|||||
Sbjct  662  GACTCTATCAGCAGATCAAGGCTGGAG-CTTATGATTTTCCATCACCAGAATGGGACACGGTGACTCCTGAAGC  734

Query  733  CAAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCCGAAGCCATTAAGCACC  806
            |||.||.||.||||||||.|||||.||.||.|||||..||||||||||||||||..|.||.||..|.|||||||
Sbjct  735  CAAAGACCTCATCAATAAAATGCTTACTATCAACCCTGCCAAACGCATCACAGCCTCAGAGGCACTGAAGCACC  808

Query  807  CCTGGATCTCGCACCGCTCCACCGTGGCAT-CGTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTT  879
            |.|||||||..||.||.||.||.||.||.| |.|| |||||||||||||||||.||.||||||.|||||||.||
Sbjct  809  CATGGATCTGTCAACGTTCTACTGTTGCTTCCATG-ATGCACAGACAGGAGACTGTAGACTGCTTGAAGAAATT  881

Query  880  CAATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGA  953
            .|||||.||.||.|||||.|||||.|||||..|.||.||.||||||||.||.|||||.|||||   ||..||||
Sbjct  882  TAATGCTAGAAGAAAACTAAAGGGTGCCATCTTGACAACTATGCTGGCTACAAGGAATTTCTC---AGCCAAGA  952

Query  954  ----GTGGGGGAAACAAGAAGAGCGATGGTGTGAAGGAATCCTCAGAGAGCACCAACACCACCATCGAGGATGA  1023
                ||.|..|||||.|       |||||.||.|||||.||..|.|||||..|.||.||.||.||.||||||||
Sbjct  953  GTTTGTTGAAGAAACCA-------GATGGAGTAAAGGAGTCAACTGAGAGTTCAAATACAACAATTGAGGATGA  1019

Query 1024  AGACACCAAAGTGCGGAAACAGGAAATTATAAAAGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATT  1097
            |||....||||..||.||.||.||.|||||.|||||.||.||.||.|||||.|||||.||.|.||||||.||.|
Sbjct 1020  AGATGTGAAAGCACGAAAGCAAGAGATTATCAAAGTCACTGAACAACTGATCGAAGCTATCAACAATGGGGACT  1093

Query 1098  TTGAGTCCTACACGAAGATGTGCGACCCTGGCATGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAG  1171
            ||||..|||||||.||.||.||.|||||.|||.|.||.||.||.||||||||.||..||||.||..|.||.||.
Sbjct 1094  TTGAAGCCTACACAAAAATCTGTGACCCAGGCCTTACTGCTTTTGAACCTGAAGCTTTGGGTAATTTAGTGGAA  1167

Query 1172  GGCCTGGACTTCCATCGATTCTATTTTGAAAACCTG--TGGTCCCGGAACAGC---AAGCCCGTGCACACCACC  1240
            ||..||||.||.||.||||||||.||||||||  ||  |.||||   ||.|||   ||.||..|.|||||.|..
Sbjct 1168  GGGATGGATTTTCACCGATTCTACTTTGAAAA--TGCTTTGTCC---AAAAGCAATAAACCAATCCACACTATT  1236

Query 1241  ATCCTGAATCCCCACATCCACCTGATGGGCGACGAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCT  1314
            ||.||.||.||.||..|.||.|||.|.||.||.||..|.||||||||.||.||.||..|..||||.||||||.|
Sbjct 1237  ATTCTAAACCCTCATGTACATCTGGTAGGGGATGATGCCGCCTGCATAGCATATATTAGGCTCACACAGTACAT  1310

Query 1315  GGACGCTGGC---GGCATCCCACGCACCGCCCAGTCGGAGGAGACCCGTGTCTGGCACCGCCGGGACGGCAAAT  1385
            |||   ||||   ||.||.|||...||....|||||.||.|||||.|||||.||||||||||||||.||.||.|
Sbjct 1311  GGA---TGGCAGTGGAATGCCAAAGACAATGCAGTCAGAAGAGACTCGTGTGTGGCACCGCCGGGATGGAAAGT  1381

Query 1386  GGCAGATCGTCCACTTCCACAGATCTGGGGCGCCCTCCGTCCTGCC------CCAC------------------  1435
            ||||||..||.||.||.||..|.||.|||.|.||..|.||.|  ||      ||||                  
Sbjct 1382  GGCAGAATGTTCATTTTCATCGCTCGGGGTCACCAACAGTAC--CCATCAAGCCACCCTGTATTCCAAATGGGA  1453

Query 1436  -----------------------------------------  1435
                                                     
Sbjct 1454  AAGAAAACTTCTCAGGAGGCACCTCTTTGTGGCAAAACATC  1494