Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14562
• Subject: NM_001321577.2
• Aligned Length: 1499
• Identities: 1085
• Gaps: 90

Alignment

Query    1  ATGG---CCACCATCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGAATTGGGCAAGGGAGCCTT  71
            ||||   |.||||..|||||||||.|.||||||||.|||||.|||||.||||||||..|.||.|||||.||.||
Sbjct    1  ATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATT  74

Query   72  CTCGGTGGTGCGAAGGTGTGTGAAGGTGCTGGCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAAGC  145
            |||.||||||.||||.|||.||||..|.|...||||.||.||.|||||||||||.||.||||||||.||.||||
Sbjct   75  CTCAGTGGTGAGAAGATGTATGAAAATTCCTACTGGACAAGAATATGCTGCCAAAATTATCAACACCAAAAAGC  148

Query  146  TGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCGTC  219
            |.||.||.||.||.||||||||.||.||..|.|||||..|.||||||||.||..||||||||||.||.||.||.
Sbjct  149  TTTCTGCTAGGGATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTGTG  222

Query  220  CGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTGTT  293
            |||||.|||||.|||||.|||||.|||||....||||||.||.|.||.||..|.||.|||||.||.||||||||
Sbjct  223  CGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTTAGTTACTGGAGGTGAACTGTT  296

Query  294  TGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCTG  367
            ||||||.||.|||||..|.||.||.||||||||.||.|||||||||||.||.||.|||||||||||||||||||
Sbjct  297  TGAAGACATAGTGGCAAGAGAATACTACAGTGAAGCTGATGCCAGTCATTGCATTCAGCAGATCCTGGAGGCTG  370

Query  368  TGCTGCACTGCCACCAGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTG----TTGCTGGCCTCCAA  437
            ||||.||||||||.||||||||.|||||.||.|||||||||||||||||||||.||    |.|||.|    |||
Sbjct  371  TGCTACACTGCCATCAGATGGGCGTGGTCCATCGGGACCTGAAGCCTGAGAATTTGCTTTTAGCTAG----CAA  440

Query  438  GCTCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGGT  511
            ...||||||.||.||.|||||..||||||||||||||.|.||||||||.||..|.|||||.||||||||.||||
Sbjct  441  ATCCAAGGGAGCAGCTGTGAAATTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGGGACCAGCAGGCGTGGT  514

Query  512  TTGGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGAC  585
            ||||.|||||.||.||.|||||||||||.||.||||||||..|.||.||.||.||.||.||.|||||.|||||.
Sbjct  515  TTGGTTTTGCTGGCACACCTGGATATCTTTCTCCAGAAGTTTTACGTAAAGATCCTTATGGAAAGCCAGTGGAT  588

Query  586  CTGTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACCG  659
            .|||||||.|||||.|||||.||.||.||.||.||.||.|||||.||.||.|||||||||||.|||||.|||.|
Sbjct  589  ATGTGGGCATGTGGTGTCATTCTCTATATTCTACTTGTGGGGTATCCACCCTTCTGGGATGAAGACCAACACAG  662

Query  660  CCTGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGCC  733
            .||.||.|||||||||||.||.||.| ||||||||||.|||||.||.|||||||||||.||.||.||.||||||
Sbjct  663  ACTCTATCAGCAGATCAAGGCTGGAG-CTTATGATTTTCCATCACCAGAATGGGACACGGTGACTCCTGAAGCC  735

Query  734  AAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCCGAAGCCATTAAGCACCC  807
            ||.||.||.||||||||.|||||.||.||.|||||..||||||||||||||||..|.||.||..|.||||||||
Sbjct  736  AAAGACCTCATCAATAAAATGCTTACTATCAACCCTGCCAAACGCATCACAGCCTCAGAGGCACTGAAGCACCC  809

Query  808  CTGGATCTCGCACCGCTCCACCGTGGCAT-CGTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTTC  880
            .|||||||..||.||.||.||.||.||.| |.|| |||||||||||||||||.||.||||||.|||||||.||.
Sbjct  810  ATGGATCTGTCAACGTTCTACTGTTGCTTCCATG-ATGCACAGACAGGAGACTGTAGACTGCTTGAAGAAATTT  882

Query  881  AATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGA-  953
            |||||.||.||.|||||.|||||.|||||..|.||.||.||||||||.||.|||||.|||||   ||..|||| 
Sbjct  883  AATGCTAGAAGAAAACTAAAGGGTGCCATCTTGACAACTATGCTGGCTACAAGGAATTTCTC---AGCCAAGAG  953

Query  954  ---GTGGGGGAAACAAGAAGAGCGATGGTGTGAAGG----------------AATCCTCA--------------  994
               ||.|..|||||.|       |||||.||.||||                |||||.||              
Sbjct  954  TTTGTTGAAGAAACCA-------GATGGAGTAAAGGAGCCCCAAACTACTGTAATCCACAACCCTGATGGAAAC  1020

Query  995  ------------GAGAGCACCAACACCACCATCGAGGATGAAGACACCAAAGTGCGGAAACAGGAAATTATAAA  1056
                        |||||..|.||.||.||.||.|||||||||||....||||..||.||.||.||.|||||.||
Sbjct 1021  AAGGAGTCAACTGAGAGTTCAAATACAACAATTGAGGATGAAGATGTGAAAGCACGAAAGCAAGAGATTATCAA  1094

Query 1057  AGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGAGTCCTACACGAAGATGTGCGACCCTGGCA  1130
            |||.||.||.||.|||||.|||||.||.|.||||||.||.|||||..|||||||.||.||.||.|||||.|||.
Sbjct 1095  AGTCACTGAACAACTGATCGAAGCTATCAACAATGGGGACTTTGAAGCCTACACAAAAATCTGTGACCCAGGCC  1168

Query 1131  TGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCCTGGACTTCCATCGATTCTATTTTGAAAAC  1204
            |.||.||.||.||||||||.||..||||.||..|.||.||.||..||||.||.||.||||||||.|||||||| 
Sbjct 1169  TTACTGCTTTTGAACCTGAAGCTTTGGGTAATTTAGTGGAAGGGATGGATTTTCACCGATTCTACTTTGAAAA-  1241

Query 1205  CTG--TGGTCCCGGAACAGC---AAGCCCGTGCACACCACCATCCTGAATCCCCACATCCACCTGATGGGCGAC  1273
             ||  |.||||   ||.|||   ||.||..|.|||||.|..||.||.||.||.||..|.||.|||.|.||.||.
Sbjct 1242  -TGCTTTGTCC---AAAAGCAATAAACCAATCCACACTATTATTCTAAACCCTCATGTACATCTGGTAGGGGAT  1311

Query 1274  GAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGACGCTGGC---GGCATCCCACGCACCGCCCA  1344
            ||..|.||||||||.||.||.||..|..||||.||||||.||||   ||||   ||.||.|||...||....||
Sbjct 1312  GATGCCGCCTGCATAGCATATATTAGGCTCACACAGTACATGGA---TGGCAGTGGAATGCCAAAGACAATGCA  1382

Query 1345  GTCGGAGGAGACCCGTGTCTGGCACCGCCGGGACGGCAAATGGCAGATCGTCCACTTCCACAGATCTGGGGCGC  1418
            |||.||.|||||.|||||.||||||||||||||.||.||.|||||||..||.||.||.||..|.||.|||.|.|
Sbjct 1383  GTCAGAAGAGACTCGTGTGTGGCACCGCCGGGATGGAAAGTGGCAGAATGTTCATTTTCATCGCTCGGGGTCAC  1456

Query 1419  CCTCCGTCCTGCC--CCAC  1435
            |..|.||.|  ||  |.||
Sbjct 1457  CAACAGTAC--CCATCAAC  1473