Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14562
• Subject: NM_001321580.2
• Aligned Length: 1576
• Identities: 1079
• Gaps: 160

Alignment

Query    1  ATGG---CCACCATCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGAATTGGGCAAGGGAGCCTT  71
            ||||   |.||||..|||||||||.|.||||||||.|||||.|||||.||||||||..|.||.|||||.||.||
Sbjct    1  ATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATT  74

Query   72  CTCGGTGGTGCGAAGGTGTGTGAAGGTGCTGGCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAAGC  145
            |||.||||||.||||.|||.||||..|.|...||||.||.||.|||||||||||.||.||||||||.||.||||
Sbjct   75  CTCAGTGGTGAGAAGATGTATGAAAATTCCTACTGGACAAGAATATGCTGCCAAAATTATCAACACCAAAAAGC  148

Query  146  TGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCGTC  219
            |.||.||.||.||.||||||||.||.||..|.|||||..|.||||||||.||..||||||||||.||.||.||.
Sbjct  149  TTTCTGCTAGGGATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTGTG  222

Query  220  CGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTGTT  293
            |||||.|||||.|||||.|||||.|||||....||||||.||.|.||.||..|.||.|||||.||.||||||||
Sbjct  223  CGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTTAGTTACTGGAGGTGAACTGTT  296

Query  294  TGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCTG  367
            ||||||.||.|||||..|.||.||.||||||||.||.|||||||||||.|||||.||||||||.||.||...||
Sbjct  297  TGAAGACATAGTGGCAAGAGAATACTACAGTGAAGCTGATGCCAGTCATTGTATACAGCAGATTCTAGAAAGTG  370

Query  368  TGCTGCACTGCCACC-AGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTG----TTGCTGGCCTCCA  436
            |....||.||.|||| |.|| ||..|.||.|||.||||||||||||||||||||.||    |.|||.|    ||
Sbjct  371  TTAATCATTGTCACCTAAAT-GGCATAGTTCACAGGGACCTGAAGCCTGAGAATTTGCTTTTAGCTAG----CA  439

Query  437  AGCTCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGG  510
            |...||||||.||.||.|||||..||||||||||||||.|.||||||||.||..|.|||||.||||||||.|||
Sbjct  440  AATCCAAGGGAGCAGCTGTGAAATTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGGGACCAGCAGGCGTGG  513

Query  511  TTTGGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGA  584
            |||||.|||||.||.||.|||||||||||.||.||||||||..|.||.||.||.||.||.||.|||||.|||||
Sbjct  514  TTTGGTTTTGCTGGCACACCTGGATATCTTTCTCCAGAAGTTTTACGTAAAGATCCTTATGGAAAGCCAGTGGA  587

Query  585  CCTGTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACC  658
            ..|||||||.|||||.|||||.||.||.||.||.||.||.|||||.||.||.|||||||||||.|||||.|||.
Sbjct  588  TATGTGGGCATGTGGTGTCATTCTCTATATTCTACTTGTGGGGTATCCACCCTTCTGGGATGAAGACCAACACA  661

Query  659  GCCTGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGC  732
            |.||.||.|||||||||||.||.||.| ||||||||||.|||||.||.|||||||||||.||.||.||.|||||
Sbjct  662  GACTCTATCAGCAGATCAAGGCTGGAG-CTTATGATTTTCCATCACCAGAATGGGACACGGTGACTCCTGAAGC  734

Query  733  CAAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCCGAAGCCATTAAGCACC  806
            |||.||.||.||||||||.|||||.||.||.|||||..||||||||||||||||..|.||.||..|.|||||||
Sbjct  735  CAAAGACCTCATCAATAAAATGCTTACTATCAACCCTGCCAAACGCATCACAGCCTCAGAGGCACTGAAGCACC  808

Query  807  CCTGGATCTCGCACCGCTCCACCGTGGCAT-CGTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTT  879
            |.|||||||..||.||.||.||.||.||.| |.|| |||||||||||||||||.||.||||||.|||||||.||
Sbjct  809  CATGGATCTGTCAACGTTCTACTGTTGCTTCCATG-ATGCACAGACAGGAGACTGTAGACTGCTTGAAGAAATT  881

Query  880  CAATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGA  953
            .|||||.||.||.|||||.|||||.|||||..|.||.||.||||||||.||.|||||.|||||.|.||..||||
Sbjct  882  TAATGCTAGAAGAAAACTAAAGGGTGCCATCTTGACAACTATGCTGGCTACAAGGAATTTCTCAGCAGCCAAGA  955

Query  954  G------------------TGG------GGGAAACAAGAAGAGCGATGGTGTG-----------AAGGAA----  988
            |                  |||      |..||||||.|| |||.|..||| |           ||.|||    
Sbjct  956  GTTTGTTGAAGAAACCAGATGGAGTAAAGATAAACAACAA-AGCCAACGTG-GTAACCAGCCCCAAAGAAAATA  1027

Query  989  -TCCT-------------------CAGAGAGCACCAACACCACCATCGAGGATGAAGACACCAAAGTGCGGAAA  1042
             ||||                   |.|||||..|.||.||.||.||.|||||||||||....||||..||.||.
Sbjct 1028  TTCCTACCCCAGCGCTGGAGTCAACTGAGAGTTCAAATACAACAATTGAGGATGAAGATGTGAAAGCACGAAAG  1101

Query 1043  CAGGAAATTATAAAAGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGAGTCCTACACGAAGAT  1116
            ||.||.|||||.|||||.||.||.||.|||||.|||||.||.|.||||||.||.|||||..|||||||.||.||
Sbjct 1102  CAAGAGATTATCAAAGTCACTGAACAACTGATCGAAGCTATCAACAATGGGGACTTTGAAGCCTACACAAAAAT  1175

Query 1117  GTGCGACCCTGGCATGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCCTGGACTTCCATCGAT  1190
            .||.|||||.|||.|.||.||.||.||||||||.||..||||.||..|.||.||.||..||||.||.||.||||
Sbjct 1176  CTGTGACCCAGGCCTTACTGCTTTTGAACCTGAAGCTTTGGGTAATTTAGTGGAAGGGATGGATTTTCACCGAT  1249

Query 1191  TCTATTTTGAAAACCTG--TGGTCCCGGAACAGC---AAGCCCGTGCACACCACCATCCTGAATCCCCACATCC  1259
            ||||.||||||||  ||  |.||||   ||.|||   ||.||..|.|||||.|..||.||.||.||.||..|.|
Sbjct 1250  TCTACTTTGAAAA--TGCTTTGTCC---AAAAGCAATAAACCAATCCACACTATTATTCTAAACCCTCATGTAC  1318

Query 1260  ACCTGATGGGCGACGAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGACGCTGGC---GGCATC  1330
            |.|||.|.||.||.||..|.||||||||.||.||.||..|..||||.||||||.||||   ||||   ||.||.
Sbjct 1319  ATCTGGTAGGGGATGATGCCGCCTGCATAGCATATATTAGGCTCACACAGTACATGGA---TGGCAGTGGAATG  1389

Query 1331  CCACGCACCGCCCAGTCGGAGGAGACCCGTGTCTGGCACCGCCGGGACGGCAAATGGCAGATCGTCCACTTCCA  1404
            |||...||....|||||.||.|||||.|||||.||||||||||||||.||.||.|||||||..||.||.||.||
Sbjct 1390  CCAAAGACAATGCAGTCAGAAGAGACTCGTGTGTGGCACCGCCGGGATGGAAAGTGGCAGAATGTTCATTTTCA  1463

Query 1405  CAGATCTGGGGCGCCCTCCGTCCTGCC------CCAC-------------------------------------  1435
            ..|.||.|||.|.||..|.||.|  ||      ||||                                     
Sbjct 1464  TCGCTCGGGGTCACCAACAGTAC--CCATCAAGCCACCCTGTATTCCAAATGGGAAAGAAAACTTCTCAGGAGG  1535

Query 1436  ----------------------  1435
                                  
Sbjct 1536  CACCTCTTTGTGGCAAAACATC  1557