Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14562
- Subject:
- NM_001321583.2
- Aligned Length:
- 1501
- Identities:
- 1084
- Gaps:
- 91
Alignment
Query 1 ATGG---CCACCATCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGAATTGGGCAAGGGAGCCTT 71
|||| |.||||..|||||||||.|.||||||||.|||||.|||||.||||||||..|.||.|||||.||.||
Sbjct 1 ATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATT 74
Query 72 CTCGGTGGTGCGAAGGTGTGTGAAGGTGCTGGCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAAGC 145
|||.||||||.||||.|||.||||..|.|...||||.||.||.|||||||||||.||.||||||||.||.||||
Sbjct 75 CTCAGTGGTGAGAAGATGTATGAAAATTCCTACTGGACAAGAATATGCTGCCAAAATTATCAACACCAAAAAGC 148
Query 146 TGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCGTC 219
|.||.||.||.||.||||||||.||.||..|.|||||..|.||||||||.||..||||||||||.||.||.||.
Sbjct 149 TTTCTGCTAGGGATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTGTG 222
Query 220 CGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTGTT 293
|||||.|||||.|||||.|||||.|||||....||||||.||.|.||.||..|.||.|||||.||.||||||||
Sbjct 223 CGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTTAGTTACTGGAGGTGAACTGTT 296
Query 294 TGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCTG 367
||||||.||.|||||..|.||.||.||||||||.||.|||||||||||.||.||.|||||||||||||||||||
Sbjct 297 TGAAGACATAGTGGCAAGAGAATACTACAGTGAAGCTGATGCCAGTCATTGCATTCAGCAGATCCTGGAGGCTG 370
Query 368 TGCTGCACTGCCACCAGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTG----TTGCTGGCCTCCAA 437
||||.||||||||.||||||||.|||||.||.|||||||||||||||||||||.|| |.|||.| |||
Sbjct 371 TGCTACACTGCCATCAGATGGGCGTGGTCCATCGGGACCTGAAGCCTGAGAATTTGCTTTTAGCTAG----CAA 440
Query 438 GCTCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGGT 511
...||||||.||.||.|||||..||||||||||||||.|.||||||||.||..|.|||||.||||||||.||||
Sbjct 441 ATCCAAGGGAGCAGCTGTGAAATTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGGGACCAGCAGGCGTGGT 514
Query 512 TTGGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGAC 585
||||.|||||.||.||.|||||||||||.||.||||||||..|.||.||.||.||.||.||.|||||.|||||.
Sbjct 515 TTGGTTTTGCTGGCACACCTGGATATCTTTCTCCAGAAGTTTTACGTAAAGATCCTTATGGAAAGCCAGTGGAT 588
Query 586 CTGTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACCG 659
.|||||||.|||||.|||||.||.||.||.||.||.||.|||||.||.||.|||||||||||.|||||.|||.|
Sbjct 589 ATGTGGGCATGTGGTGTCATTCTCTATATTCTACTTGTGGGGTATCCACCCTTCTGGGATGAAGACCAACACAG 662
Query 660 CCTGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGCC 733
.||.||.|||||||||||.||.||.| ||||||||||.|||||.||.|||||||||||.||.||.||.||||||
Sbjct 663 ACTCTATCAGCAGATCAAGGCTGGAG-CTTATGATTTTCCATCACCAGAATGGGACACGGTGACTCCTGAAGCC 735
Query 734 AAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCCGAAGCCATTAAGCACCC 807
||.||.||.||||||||.|||||.||.||.|||||..||||||||||||||||..|.||.||..|.||||||||
Sbjct 736 AAAGACCTCATCAATAAAATGCTTACTATCAACCCTGCCAAACGCATCACAGCCTCAGAGGCACTGAAGCACCC 809
Query 808 CTGGATCTCGCACCGCTCCACCGTGGCAT-CGTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTTC 880
.|||||||..||.||.||.||.||.||.| |.|| |||||||||||||||||.||.||||||.|||||||.||.
Sbjct 810 ATGGATCTGTCAACGTTCTACTGTTGCTTCCATG-ATGCACAGACAGGAGACTGTAGACTGCTTGAAGAAATTT 882
Query 881 AATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGA- 953
|||||.||.||.|||||.|||||.|||||..|.||.||.||||||||.||.|||||.|||||.|.||..||||
Sbjct 883 AATGCTAGAAGAAAACTAAAGGGTGCCATCTTGACAACTATGCTGGCTACAAGGAATTTCTCAGCAGCCAAGAG 956
Query 954 ---GTGGGGGAAACAAGAAGAGCGATGGTGTGAAGG----------------AATCCTCA-------------- 994
||.|..|||||.| |||||.||.|||| |||||.||
Sbjct 957 TTTGTTGAAGAAACCA-------GATGGAGTAAAGGAGCCCCAAACTACTGTAATCCACAACCCTGATGGAAAC 1023
Query 995 ------------GAGAGCACCAACACCACCATCGAGGATGAAGACACCAAAGTGCGGAAACAGGAAATTATAAA 1056
|||||..|.||.||.||.||.|||||||||||....||||..||.||.||.||.|||||.||
Sbjct 1024 AAGGAGTCAACTGAGAGTTCAAATACAACAATTGAGGATGAAGATGTGAAAGCACGAAAGCAAGAGATTATCAA 1097
Query 1057 AGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGAGTCCTACACGAAGATGTGCGACCCTGGCA 1130
|||.||.||.||.|||||.|||||.||.|.||||||.||.|||||..|||||||.||.||.||.|||||.|||.
Sbjct 1098 AGTCACTGAACAACTGATCGAAGCTATCAACAATGGGGACTTTGAAGCCTACACAAAAATCTGTGACCCAGGCC 1171
Query 1131 TGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCCTGGACTTCCATCGATTCTATTTTGAAAAC 1204
|.||.||.||.||||||||.||..||||.||..|.||.||.||..||||.||.||.||||||||.||||||||
Sbjct 1172 TTACTGCTTTTGAACCTGAAGCTTTGGGTAATTTAGTGGAAGGGATGGATTTTCACCGATTCTACTTTGAAAA- 1244
Query 1205 CTG--TGGTCCCGGAACAGC---AAGCCCGTGCACACCACCATCCTGAATCCCCACATCCACCTGATGGGCGAC 1273
|| |.|||| ||.||| ||.||..|.|||||.|..||.||.||.||.||..|.||.|||.|.||.||.
Sbjct 1245 -TGCTTTGTCC---AAAAGCAATAAACCAATCCACACTATTATTCTAAACCCTCATGTACATCTGGTAGGGGAT 1314
Query 1274 GAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGACGCTGGC---GGCATCCCACGCACCGCCCA 1344
||..|.||||||||.||.||.||..|..||||.||||||.|||| |||| ||.||.|||...||....||
Sbjct 1315 GATGCCGCCTGCATAGCATATATTAGGCTCACACAGTACATGGA---TGGCAGTGGAATGCCAAAGACAATGCA 1385
Query 1345 GTCGGAGGAGACCCGTGTCTGGCACCGCCGGGACGGCAAATGGCAGATCGTCCACTTCCACAGATCTGGGGCGC 1418
|||.||.|||||.|||||.||||||||||||||.||.||.|||||||..||.||.||.||..|.||.|||.|.|
Sbjct 1386 GTCAGAAGAGACTCGTGTGTGGCACCGCCGGGATGGAAAGTGGCAGAATGTTCATTTTCATCGCTCGGGGTCAC 1459
Query 1419 CCTCCGTCCTGCCCCAC---- 1435
|..|.|| .||||.
Sbjct 1460 CAACAGT----ACCCATCAAG 1476