Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14562
• Subject: NM_001321587.2
• Aligned Length: 1528
• Identities: 1080
• Gaps: 112

Alignment

Query    1  ATGG---CCACCATCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGAATTGGGCAAGGGAGCCTT  71
            ||||   |.||||..|||||||||.|.||||||||.|||||.|||||.||||||||..|.||.|||||.||.||
Sbjct    1  ATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATT  74

Query   72  CTCGGTGGTGCGAAGGTGTGTGAAGGTGCTGGCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAAGC  145
            |||.||||||.||||.|||.||||..|.|...||||.||.||.|||||||||||.||.||||||||.||.||||
Sbjct   75  CTCAGTGGTGAGAAGATGTATGAAAATTCCTACTGGACAAGAATATGCTGCCAAAATTATCAACACCAAAAAGC  148

Query  146  TGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCGTC  219
            |.||.||.||.||.||||||||.||.||..|.|||||..|.||||||||.||..||||||||||.||.||.||.
Sbjct  149  TTTCTGCTAGGGATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTGTG  222

Query  220  CGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTGTT  293
            |||||.|||||.|||||.|||||.|||||....||||||.||.|.||.||..|.||.|||||.||.||||||||
Sbjct  223  CGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTTAGTTACTGGAGGTGAACTGTT  296

Query  294  TGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCTG  367
            ||||||.||.|||||..|.||.||.||||||||.||.|||||||||||.|||||.||||||||.||.||...||
Sbjct  297  TGAAGACATAGTGGCAAGAGAATACTACAGTGAAGCTGATGCCAGTCATTGTATACAGCAGATTCTAGAAAGTG  370

Query  368  TGCTGCACTGCCACC-AGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTG----TTGCTGGCCTCCA  436
            |....||.||.|||| |.|| ||..|.||.|||.||||||||||||||||||||.||    |.|||.|    ||
Sbjct  371  TTAATCATTGTCACCTAAAT-GGCATAGTTCACAGGGACCTGAAGCCTGAGAATTTGCTTTTAGCTAG----CA  439

Query  437  AGCTCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGG  510
            |...||||||.||.||.|||||..||||||||||||||.|.||||||||.||..|.|||||.||||||||.|||
Sbjct  440  AATCCAAGGGAGCAGCTGTGAAATTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGGGACCAGCAGGCGTGG  513

Query  511  TTTGGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGA  584
            |||||.|||||.||.||.|||||||||||.||.||||||||..|.||.||.||.||.||.||.|||||.|||||
Sbjct  514  TTTGGTTTTGCTGGCACACCTGGATATCTTTCTCCAGAAGTTTTACGTAAAGATCCTTATGGAAAGCCAGTGGA  587

Query  585  CCTGTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACC  658
            ..|||||||.|||||.|||||.||.||.||.||.||.||.|||||.||.||.|||||||||||.|||||.|||.
Sbjct  588  TATGTGGGCATGTGGTGTCATTCTCTATATTCTACTTGTGGGGTATCCACCCTTCTGGGATGAAGACCAACACA  661

Query  659  GCCTGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGC  732
            |.||.||.|||||||||||.||.||.| ||||||||||.|||||.||.|||||||||||.||.||.||.|||||
Sbjct  662  GACTCTATCAGCAGATCAAGGCTGGAG-CTTATGATTTTCCATCACCAGAATGGGACACGGTGACTCCTGAAGC  734

Query  733  CAAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCCGAAGCCATTAAGCACC  806
            |||.||.||.||||||||.|||||.||.||.|||||..||||||||||||||||..|.||.||..|.|||||||
Sbjct  735  CAAAGACCTCATCAATAAAATGCTTACTATCAACCCTGCCAAACGCATCACAGCCTCAGAGGCACTGAAGCACC  808

Query  807  CCTGGATCTCGCACCGCTCCACCGTGGCAT-CGTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTT  879
            |.|||||||..||.||.||.||.||.||.| |.|| |||||||||||||||||.||.||||||.|||||||.||
Sbjct  809  CATGGATCTGTCAACGTTCTACTGTTGCTTCCATG-ATGCACAGACAGGAGACTGTAGACTGCTTGAAGAAATT  881

Query  880  CAATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGA  953
            .|||||.||.||.|||||.|||||.|||||..|.||.||.||||||||.||.|||||.|||||.|.||..||||
Sbjct  882  TAATGCTAGAAGAAAACTAAAGGGTGCCATCTTGACAACTATGCTGGCTACAAGGAATTTCTCAGCAGCCAAGA  955

Query  954  ----GTGGGGGAAAC-----------AAGAAGAG-----------CGATGGTG------TGAAGG---------  986
                ||.|..|||||           |||||.||           |||  |||      |||.||         
Sbjct  956  GTTTGTTGAAGAAACCAGATGGAGTAAAGAAAAGGAAGTCCAGTTCGA--GTGTTCAGATGATGGAGCCCCAAA  1027

Query  987  -------AATCCTCA--------------------------GAGAGCACCAACACCACCATCGAGGATGAAGAC  1027
                   |||||.||                          |||||..|.||.||.||.||.|||||||||||.
Sbjct 1028  CTACTGTAATCCACAACCCTGATGGAAACAAGGAGTCAACTGAGAGTTCAAATACAACAATTGAGGATGAAGAT  1101

Query 1028  ACCAAAGTGCGGAAACAGGAAATTATAAAAGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGA  1101
            ...||||..||.||.||.||.|||||.|||||.||.||.||.|||||.|||||.||.|.||||||.||.|||||
Sbjct 1102  GTGAAAGCACGAAAGCAAGAGATTATCAAAGTCACTGAACAACTGATCGAAGCTATCAACAATGGGGACTTTGA  1175

Query 1102  GTCCTACACGAAGATGTGCGACCCTGGCATGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCC  1175
            ..|||||||.||.||.||.|||||.|||.|.||.||.||.||||||||.||..||||.||..|.||.||.||..
Sbjct 1176  AGCCTACACAAAAATCTGTGACCCAGGCCTTACTGCTTTTGAACCTGAAGCTTTGGGTAATTTAGTGGAAGGGA  1249

Query 1176  TGGACTTCCATCGATTCTATTTTGAAAACCTG--TGGTCCCGGAACAGC---AAGCCCGTGCACACCACCATCC  1244
            ||||.||.||.||||||||.||||||||  ||  |.||||   ||.|||   ||.||..|.|||||.|..||.|
Sbjct 1250  TGGATTTTCACCGATTCTACTTTGAAAA--TGCTTTGTCC---AAAAGCAATAAACCAATCCACACTATTATTC  1318

Query 1245  TGAATCCCCACATCCACCTGATGGGCGACGAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGAC  1318
            |.||.||.||..|.||.|||.|.||.||.||..|.||||||||.||.||.||..|..||||.||||||.|||| 
Sbjct 1319  TAAACCCTCATGTACATCTGGTAGGGGATGATGCCGCCTGCATAGCATATATTAGGCTCACACAGTACATGGA-  1391

Query 1319  GCTGGC---GGCATCCCACGCACCGCCCAGTCGGAGGAGACCCGTGTCTGGCACCGCCGGGACGGCAAATGGCA  1389
              ||||   ||.||.|||...||....|||||.||.|||||.|||||.||||||||||||||.||.||.|||||
Sbjct 1392  --TGGCAGTGGAATGCCAAAGACAATGCAGTCAGAAGAGACTCGTGTGTGGCACCGCCGGGATGGAAAGTGGCA  1463

Query 1390  GATCGTCCACTTCCACAGATCTGGGGCGCCCTCCGTCCTGCC--CCAC  1435
            ||..||.||.||.||..|.||.|||.|.||..|.||.|  ||  |.||
Sbjct 1464  GAATGTTCATTTTCATCGCTCGGGGTCACCAACAGTAC--CCATCAAC  1509