Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14562
• Subject: NM_001321590.2
• Aligned Length: 1500
• Identities: 1074
• Gaps: 89

Alignment

Query    1  ATGG---CCACCATCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGAATTGGGCAAGGGAGCCTT  71
            ||||   |.||||..|||||||||.|.||||||||.|||||.|||||.||||||||..|.||.|||||.||.||
Sbjct    1  ATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAAGGGGGCATT  74

Query   72  CTCGGTGGTGCGAAGGTGTGTGAAGGTGCTGGCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAAGC  145
            |||.||||||.||||.|||.||||..|.|...||||.||.||.|||||||||||.||.||||||||.||.||||
Sbjct   75  CTCAGTGGTGAGAAGATGTATGAAAATTCCTACTGGACAAGAATATGCTGCCAAAATTATCAACACCAAAAAGC  148

Query  146  TGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCGTC  219
            |.||.||.||.||.||||||||.||.||..|.|||||..|.||||||||.||..||||||||||.||.||.||.
Sbjct  149  TTTCTGCTAGGGATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTGTG  222

Query  220  CGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTGTT  293
            |||||.|||||.|||||.|||||.|||||....||||||.||.|.||.||..|.||.|||||.||.||||||||
Sbjct  223  CGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTTAGTTACTGGAGGTGAACTGTT  296

Query  294  TGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCTG  367
            ||||||.||.|||||..|.||.||.||||||||.||.|||||||||||.|||||.||||||||.||.||...||
Sbjct  297  TGAAGACATAGTGGCAAGAGAATACTACAGTGAAGCTGATGCCAGTCATTGTATACAGCAGATTCTAGAAAGTG  370

Query  368  TGCTGCACTGCCACC-AGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTG----TTGCTGGCCTCCA  436
            |....||.||.|||| |.|| ||..|.||.|||.||||||||||||||||||||.||    |.|||.|    ||
Sbjct  371  TTAATCATTGTCACCTAAAT-GGCATAGTTCACAGGGACCTGAAGCCTGAGAATTTGCTTTTAGCTAG----CA  439

Query  437  AGCTCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGG  510
            |...||||||.||.||.|||||..||||||||||||||.|.||||||||.||..|.|||||.||||||||.|||
Sbjct  440  AATCCAAGGGAGCAGCTGTGAAATTGGCAGACTTTGGCTTAGCCATAGAAGTTCAAGGGGACCAGCAGGCGTGG  513

Query  511  TTTGGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGA  584
            |||||.|||||.||.||.|||||||||||.||.||||||||..|.||.||.||.||.||.||.|||||.|||||
Sbjct  514  TTTGGTTTTGCTGGCACACCTGGATATCTTTCTCCAGAAGTTTTACGTAAAGATCCTTATGGAAAGCCAGTGGA  587

Query  585  CCTGTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACC  658
            ..|||||||.|||||.|||||.||.||.||.||.||.||.|||||.||.||.|||||||||||.|||||.|||.
Sbjct  588  TATGTGGGCATGTGGTGTCATTCTCTATATTCTACTTGTGGGGTATCCACCCTTCTGGGATGAAGACCAACACA  661

Query  659  GCCTGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGC  732
            |.||.||.|||||||||||.||.||.| ||||||||||.|||||.||.|||||||||||.||.||.||.|||||
Sbjct  662  GACTCTATCAGCAGATCAAGGCTGGAG-CTTATGATTTTCCATCACCAGAATGGGACACGGTGACTCCTGAAGC  734

Query  733  CAAGGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCCGAAGCCATTAAGCACC  806
            |||.||.||.||||||||.|||||.||.||.|||||..||||||||||||||||..|.||.||..|.|||||||
Sbjct  735  CAAAGACCTCATCAATAAAATGCTTACTATCAACCCTGCCAAACGCATCACAGCCTCAGAGGCACTGAAGCACC  808

Query  807  CCTGGATCTCGCACCGCTCCACCGTGGCAT-CGTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTT  879
            |.|||||||..||.||.||.||.||.||.| |.|| |||||||||||||||||.||.||||||.|||||||.||
Sbjct  809  CATGGATCTGTCAACGTTCTACTGTTGCTTCCATG-ATGCACAGACAGGAGACTGTAGACTGCTTGAAGAAATT  881

Query  880  CAATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGA  953
            .|||||.||.||.|||||.|||||.|||||..|.||.||.||||||||.||.|||||.|||||.|.||..||||
Sbjct  882  TAATGCTAGAAGAAAACTAAAGGGTGCCATCTTGACAACTATGCTGGCTACAAGGAATTTCTCAGCAGCCAAGA  955

Query  954  ----GTGGGGGAAACAAGAAGAGCGATGGTGTGAAGG----------------AATCCTCA-------------  994
                ||.|..|||||.|       |||||.||.||||                |||||.||             
Sbjct  956  GTTTGTTGAAGAAACCA-------GATGGAGTAAAGGAGCCCCAAACTACTGTAATCCACAACCCTGATGGAAA  1022

Query  995  -------------GAGAGCACCAACACCACCATCGAGGATGAAGACACCAAAGTGCGGAAACAGGAAATTATAA  1055
                         |||||..|.||.||.||.||.|||||||||||....||||..||.||.||.||.|||||.|
Sbjct 1023  CAAGGAGTCAACTGAGAGTTCAAATACAACAATTGAGGATGAAGATGTGAAAGCACGAAAGCAAGAGATTATCA  1096

Query 1056  AAGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGAGTCCTACACGAAGATGTGCGACCCTGGC  1129
            ||||.||.||.||.|||||.|||||.||.|.||||||.||.|||||..|||||||.||.||.||.|||||.|||
Sbjct 1097  AAGTCACTGAACAACTGATCGAAGCTATCAACAATGGGGACTTTGAAGCCTACACAAAAATCTGTGACCCAGGC  1170

Query 1130  ATGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCCTGGACTTCCATCGATTCTATTTTGAAAA  1203
            .|.||.||.||.||||||||.||..||||.||..|.||.||.||..||||.||.||.||||||||.||||||||
Sbjct 1171  CTTACTGCTTTTGAACCTGAAGCTTTGGGTAATTTAGTGGAAGGGATGGATTTTCACCGATTCTACTTTGAAAA  1244

Query 1204  CCTG--TGGTCCCGGAACAGC---AAGCCCGTGCACACCACCATCCTGAATCCCCACATCCACCTGATGGGCGA  1272
              ||  |.||||   ||.|||   ||.||..|.|||||.|..||.||.||.||.||..|.||.|||.|.||.||
Sbjct 1245  --TGCTTTGTCC---AAAAGCAATAAACCAATCCACACTATTATTCTAAACCCTCATGTACATCTGGTAGGGGA  1313

Query 1273  CGAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGACGCTGGC---GGCATCCCACGCACCGCCC  1343
            .||..|.||||||||.||.||.||..|..||||.||||||.||||   ||||   ||.||.|||...||....|
Sbjct 1314  TGATGCCGCCTGCATAGCATATATTAGGCTCACACAGTACATGGA---TGGCAGTGGAATGCCAAAGACAATGC  1384

Query 1344  AGTCGGAGGAGACCCGTGTCTGGCACCGCCGGGACGGCAAATGGCAGATCGTCCACTTCCACAGATCTGGGGCG  1417
            ||||.||.|||||.|||||.||||||||||||||.||.||.|||||||..||.||.||.||..|.||.|||.|.
Sbjct 1385  AGTCAGAAGAGACTCGTGTGTGGCACCGCCGGGATGGAAAGTGGCAGAATGTTCATTTTCATCGCTCGGGGTCA  1458

Query 1418  CCCTCCGTCCTGCC--CCAC  1435
            ||..|.||.|  ||  |.||
Sbjct 1459  CCAACAGTAC--CCATCAAC  1476