Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14562
• Subject: NM_172082.3
• Aligned Length: 1571
• Identities: 1108
• Gaps: 231

Alignment

Query    1  ATGGCCACCA---TCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGA-ATTGGGCAAGGGAGCCT  70
            ||||||||||   |.|||||||||||||||||.||.|||||||||||||.|||||| ||| ||||||||.||.|
Sbjct    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATT-GGCAAGGGGGCTT  73

Query   71  TCTCGGTGGTGCGAAGGTGTGTGAAGGTGCTG-GCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAA  143
            ||||.|||||.|||.|.|||||.|||.| ||| .|.|||||.||||||||.|||||||||||||||||.|||||
Sbjct   74  TCTCTGTGGTCCGACGCTGTGTCAAGCT-CTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAA  146

Query  144  GCTGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCG  217
            |||||||||||||||.||.||||||||||||.|.||.||.||.|||||||||||.||||||||..|||||||||
Sbjct  147  GCTGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCG  220

Query  218  TCCGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTG  291
            |.||.||.||.|||||||||||.||||||||...||||||||||.|||||||.|||||||||||||||||.||.
Sbjct  221  TGCGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTC  294

Query  292  TTTGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGC  365
            ||||||||.||.|||||..|.|||||.|||||.|||||.|||||||||||||||||||||||||||||||||||
Sbjct  295  TTTGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGC  368

Query  366  TGTGCTGCACTGCCACCAGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTGTTGCTGGCCTCCAAGC  439
            .||.||.||.||.|||||.||||||||.||.|||.|.|||||.|||||.|||||.|||.|.||||||..||||.
Sbjct  369  CGTTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGT  442

Query  440  TCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGGTTT  513
            .|||.||.||.||||||||||||||||||||.|||||.||.||.||||||.|||||||.|||||||||||||||
Sbjct  443  GCAAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTT  516

Query  514  GGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGACCT  587
            ||.||.||.||.||.||.||.||.||.|||||.||.||.||.||.||.||..||||.||.||||||||||||.|
Sbjct  517  GGTTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACAT  590

Query  588  GTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACCGCC  661
            .|||||.||||||||.|||||||||||||||||.||.||.|||||.||.||||||||.||||||||||||...|
Sbjct  591  CTGGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGC  664

Query  662  TGTACCAGCAGATCAAAGCCGGCGCCTTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGCCAA  735
            ||||||||||||||||.||.||.||| |||||.|||||.||.||.||.||||||||.|||||.||.||||||||
Sbjct  665  TGTACCAGCAGATCAAGGCTGGTGCC-TATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAA  737

Query  736  GGATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCC--GAAGCCATTAAGCACCC  807
            ..|.||.|||||..|||||||||||||.|||||..||||.|||||||||||  ||  ||.|||.|.||||||||
Sbjct  738  AAACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGC--CCATGAGGCCCTGAAGCACCC  809

Query  808  CTGGATCTCGCACCGCTCCACCGTGGCAT-CGTGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTTC  880
            .|||.|||..||.||||||||.||.|||| |.|| |||||||||||||||||.|||||.||.|||||.||||||
Sbjct  810  GTGGGTCTGCCAACGCTCCACGGTAGCATCCATG-ATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTC  882

Query  881  AATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGA-  953
            |||||||||||.||.||.|||||||||||.||||||||.|||||||||||..||||.|||| |.|.|||.||| 
Sbjct  883  AATGCCAGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCT-CAGTGGGCAGAC  955

Query  954  -----------------------------------------------------GTGGGGGA-------------  961
                                                                 .|||.|||             
Sbjct  956  AGACCACCGCTCCGGCCACAATGTCCACCGCGGCCTCCGGCACCACCATGGGGCTGGTGGAACAAGCCAAGAGT  1029

Query  962  ------AACAAGAAGAGC-GATGGTGTGAAGGA----------------ATCC---------------------  991
                  |||||||| ||| |||||.||.|||||                ||||                     
Sbjct 1030  TTACTCAACAAGAA-AGCAGATGGAGTCAAGGAGCCTCAAACCACCGTCATCCATAACCCAGTGGACGGGATTA  1102

Query  992  --------TCAGAGAGCACCAACACCACCATCGAGGATGAAGACACCAAAGTGCGGAAACAGGAAATTATAAAA  1057
                    ||.||.||..||||.||||||||.||||||||||||.|.||||..|||||.|||||.||.||.||.
Sbjct 1103  AGGAGTCTTCTGACAGTGCCAATACCACCATAGAGGATGAAGACGCTAAAGCCCGGAAGCAGGAGATCATTAAG  1176

Query 1058  GTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGAGTCCTACACGAAGATGTGCGACCCTGGCAT  1131
            ...||.||||||||.||.||.|||.|.|.|||.||.||.||||||.|||||.|                     
Sbjct 1177  ACCACGGAGCAGCTCATCGAGGCCGTCAACAACGGTGACTTTGAGGCCTACGC---------------------  1229

Query 1132  GACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCCTGGACTTCCATCGATTCTATTTTGAAAACC  1205
                                                                     ||||||.||.||.||||
Sbjct 1230  ---------------------------------------------------------ATTCTACTTCGAGAACC  1246

Query 1206  TG-TGGTCCCGGAACAGCAAGCCCGTGCACACCACCATCCTGAATCCCCACATCCACCTGATGGGCGACGAGTC  1278
            || ||| ||..||||||||||||..|.|||||.|||||||||||.||.|||.|.|||.|.||.||.||.||..|
Sbjct 1247  TGCTGG-CCAAGAACAGCAAGCCGATCCACACGACCATCCTGAACCCACACGTGCACGTCATTGGAGAGGATGC  1319

Query 1279  AGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGACGCTGGC--GGCATCCCACGCACCGCCCAGTCGGA  1350
            .|||||||||||.||||||||..|||||||||||.|.||||  |||  |||...||.||||||..||||||.||
Sbjct 1320  CGCCTGCATCGCTTACATCCGGCTCACGCAGTACATTGACG--GGCAGGGCCGGCCCCGCACCAGCCAGTCTGA  1391

Query 1351  GGAGACCCGTGTCTGGCACCGCCGGGACGGCAAATGGCAGATCGTCCACTTCCACAGATCTGGGGCGC-CCTCC  1423
            |||||||||.||.|||||||||||.||||||||.|||||||.|||.|||||||||.|  ||.|||||| |||..
Sbjct 1392  GGAGACCCGCGTGTGGCACCGCCGCGACGGCAAGTGGCAGAACGTGCACTTCCACTG--CTCGGGCGCGCCTGT  1463

Query 1424  GTCCTGCCCCAC-----  1435
            |    |||||.|     
Sbjct 1464  G----GCCCCGCTGCAG  1476