Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14563
• Subject: NM_001367537.1
• Aligned Length: 1614
• Identities: 975
• Gaps: 432

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTCTGTGGTCCGACGCTGTGTCAAGCTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAAGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCGTG  222
                                                       .||.||.||||||||.|||.|.|||||||  
Sbjct    1  -------------------------------------------ATGTCGACTTCTGAAACATCCAAACATCG--  29

Query  223  CGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTCTT  296
                                            |||||     ||.|.| |||                      
Sbjct   30  --------------------------------CCACT-----GTATAC-ATC----------------------  43

Query  297  TGAAGACATTGTGGCGAGAGAGT--ACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGC  368
                 |.|||.||  |||||.||  ||.|||.|.|                     ||||||            
Sbjct   44  -----AGATTCTG--GAGAGTGTTAACCACATCCA---------------------CCAGCA------------  77

Query  369  CGTTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGT  442
                      ||.||           ||||||||||.|||||.|||||.|||||||||||.|||||.||.||.|
Sbjct   78  ----------TGACA-----------TCGTCCACAGGGACCTGAAGCCTGAGAACCTGCTGCTGGCGAGTAAAT  130

Query  443  GCAAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTT  516
            ||||.||.||.||.||.||||||||.||.||.||||||||.|||||.||.|||||.||.||||||||.||||||
Sbjct  131  GCAAGGGTGCCGCCGTCAAGCTGGCTGATTTTGGCCTAGCCATCGAAGTACAGGGAGAGCAGCAGGCTTGGTTT  204

Query  517  GGTTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACAT  590
            |||||.||||||||.|||||.|||.||||||||||||||.|..|.|||||..|.|||||.||.||||||||.||
Sbjct  205  GGTTTTGCTGGCACCCCAGGTTACTTGTCCCCTGAGGTCTTGAGGAAAGATCCCTATGGAAAACCTGTGGATAT  278

Query  591  CTGGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGC  664
            ||||||.||.|||||.||||||||.|||||.||.||||||||.||.|||||||||||.|||||.||||||||||
Sbjct  279  CTGGGCCTGCGGGGTCATCCTGTATATCCTCCTGGTGGGCTATCCTCCCTTCTGGGATGAGGATCAGCACAAGC  352

Query  665  TGTACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAAA  738
            ||||.|||||||||||||||||.||||||||.|||||.||.||.||.||||||||.||.||||||||||||||.
Sbjct  353  TGTATCAGCAGATCAAGGCTGGAGCCTATGATTTCCCATCACCAGAATGGGACACGGTAACTCCTGAAGCCAAG  426

Query  739  AACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACCCGTG  812
            |||.|.||||||||||||||||||||.|||||.||.|||||||||||.||..|..||||.||.|||||||||||
Sbjct  427  AACTTGATCAACCAGATGCTGACCATAAACCCAGCAAAGCGCATCACGGCTGACCAGGCTCTCAAGCACCCGTG  500

Query  813  GGTCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTCAATG  886
            ||||||.|||||.||||||||.||||||||||||||..|.||||||||||||||||||.||...||||||||||
Sbjct  501  GGTCTGTCAACGATCCACGGTGGCATCCATGATGCATCGTCAGGAGACTGTGGAGTGTTTGCGCAAGTTCAATG  574

Query  887  CCAGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGCAGCCAAGAGTTTA  960
            ||.|||||||.||.|||||.|||||||||||.||||||||.|.|.|..||||.||||||||.|||||.||..||
Sbjct  575  CCCGGAGAAAACTGAAGGGTGCCATCCTCACGACCATGCTTGTCTCCAGGAACTTCTCAGCTGCCAAAAGCCTA  648

Query  961  CTCAACAAGAAAGCAGAT---GGAGTCA---AGCCCCAGACGA---------------------ATAGCACCAA  1007
            .|.||||||||..|.|||   ||.||||   ||||.||.||.|                     ||.|.|.|||
Sbjct  649  TTGAACAAGAAGTCGGATGGCGGTGTCAAGGAGCCACAAACCACTGTGGTACACAACGCTACAGATGGGATCAA  722

Query 1008  -----AAACAGTGCAGCCGC--CACCAGCCCCA-AAG----GGAC------GCTTCCTC-CTGCCGCCCTGG--  1060
                 ..||||.| |||.||  ||||| ||.|| |||    ||||      |||.||.| || ||||.||||  
Sbjct  723  GGGCTCCACAGAG-AGCTGCAACACCA-CCACAGAAGATGAGGACCTCAAAGCTGCCCCGCT-CCGCACTGGGA  793

Query 1061  -----AGTCTTCTGACAGTGCC------------------------AATACCACCAT----AGAGGATGAAGAC  1101
                 || ||     |.|||||                        ||.|.|.||.|    || |.|||.||.|
Sbjct  794  ATGGCAG-CT-----CGGTGCCTGAAGGACGGAGCTCCCGGGACAGAACAGCCCCCTCTGCAG-GCATGCAGCC  860

Query 1102  GCTAAAGCC----------------------CGGAAGCAGGAGATCATTAAGACCACGGAGCAGCTCATCGAGG  1153
            .|   ||||                      ||.||.||||||||||||||||..||.||.|||||.||.||.|
Sbjct  861  CC---AGCCTTCTCTCTGCTCCTCAGCCATGCGAAAACAGGAGATCATTAAGATTACAGAACAGCTGATTGAAG  931

Query 1154  CCGTCAACAACGGTGACTTTGAGGCCTACGCGAAAATCTGTGACCCAGGGCTGACCTCGTTTGAGCCTGAAGCA  1227
            ||.|||||||.||.|||||||||||||||.||||.||.|||||.|||||.||.||.||.|||||||||||.||.
Sbjct  932  CCATCAACAATGGGGACTTTGAGGCCTACACGAAGATTTGTGATCCAGGCCTCACTTCCTTTGAGCCTGAGGCC  1005

Query 1228  CTGGGCAACCTGGTTGAAGGGATGGACTTCCACAGATTCTACTTCGAGAACCTGCTGGCCAAGAACAGCAAGCC  1301
            ||.||.|||||.||.||.||||||||.|||||.|..||.|||||.|||||.||.|||.||||||||||||||||
Sbjct 1006  CTTGGTAACCTCGTGGAGGGGATGGATTTCCATAAGTTTTACTTTGAGAATCTCCTGTCCAAGAACAGCAAGCC  1079

Query 1302  GATCCACACGACCATCCTGAACCCACACGTGCACGTCATTGGAGAGGATGCCGCCTGCATCGCTTACATCCGGC  1375
            .|||||.||.||||||||.|||||||||||.|||||.|||||.|||||.||.||.||||||||.||||||||.|
Sbjct 1080  TATCCATACCACCATCCTAAACCCACACGTCCACGTGATTGGGGAGGACGCAGCGTGCATCGCCTACATCCGCC  1153

Query 1376  TCACGCAGTACATTGACGGGCAGGGCCGGCCCCGCACCAGCCAGTCTGAGGAGACCCGCGTGTGGCACCGCCGC  1449
            ||||.||||||||.|||||||||||.|||||.||||||||||||||.||.||||||||.||.||||||||.||.
Sbjct 1154  TCACCCAGTACATCGACGGGCAGGGTCGGCCTCGCACCAGCCAGTCAGAAGAGACCCGGGTCTGGCACCGTCGG  1227

Query 1450  GACGGCAAGTGGCAGAACGTGCACTTCCACTGCTCGGGCGCGCCTGTGGCCCCGCTGCAG  1509
            ||.||||||||||..||.||.||||..||||||||.||.||.||||..||.|||||||||
Sbjct 1228  GATGGCAAGTGGCTCAATGTCCACTATCACTGCTCAGGGGCCCCTGCCGCACCGCTGCAG  1287